ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baali11 |
|---|---|
| Clone Library Name | barley_pub |
>ZN496_HUMAN (Q96IT1) Zinc finger protein 496| Length = 587 Score = 32.7 bits (73), Expect = 0.79 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -2 Query: 271 RGARAHSPHVSPFRVWSLRGGWLKLFWHTLDPVLHLLVDE 152 R A P + R+W L GGWL+ HT + +L LLV E Sbjct: 49 RYQEAAGPREALQRLWDLCGGWLRPERHTKEQILELLVLE 88
>YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III| Length = 1008 Score = 32.7 bits (73), Expect = 0.79 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -3 Query: 516 ANTVPSEP*RSRLLPVGARRCGPSFIKEVNASFDKPNPIAAISATTSMAEIIFAPQES 343 ++T PS P +++LP + + P ++E ASFD PN IS +++A I A + S Sbjct: 497 SSTAPSTP--NKVLPAASAKAAPK-LQEKAASFDIPNKSTIISTKSTVASPIKANENS 551
>CK5P3_MOUSE (Q99LM2) CDK5 regulatory subunit-associated protein 3| Length = 503 Score = 32.3 bits (72), Expect = 1.0 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Frame = +2 Query: 242 YMWRVGPRPSNTRFKELNAEPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLS- 418 Y WR G PS +L EP P+ + E + +G + +S +VAE I +G+S Sbjct: 238 YEWRTGTEPSVVERPQLE-EP--PEQVQEDEIDWGDFGVEAVSDSGIVAETPGIDWGISL 294 Query: 419 ----KDAFTSLMKEGPHLLAPTGSNLLRHGSE 502 KDA + G A + +L G+E Sbjct: 295 ESEAKDAGADKIDWGDDAAAASEITVLETGTE 326
>IDI2_STAS1 (Q49ZS3) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 347 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +2 Query: 320 LPEWKETMDSWG---AKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTG 475 +PE T +W A+++S ++V + +GFG+SK+ SL + G + +G Sbjct: 158 MPEGNRTFSTWMENLAQIVSRVDVPVIVKEVGFGMSKETIKSLNEIGVRYVDVSG 212
>UVRA_AGRT5 (Q8UF86) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 973 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = +2 Query: 164 EMQDRIKSMPEEFQPATPKGPDPKWRYMWRVGPRPSNTRFKELNAEPVIPDGLPEWKETM 343 ++ + + +E Q A +G D K + ++ G R T N E ++P+ WKET Sbjct: 353 KLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKT---VKNFEGIVPNLERRWKETD 409 Query: 344 DSWGAKMISAIEVVAEM-AAIGFGLSKDA 427 +W + I A A G+ L +A Sbjct: 410 SAWAREEIERYMSAAPCPACAGYRLKPEA 438
>PHEB_RHOS2 (P27198) B-phycoerythrin beta chain| Length = 177 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/44 (27%), Positives = 28/44 (63%) Frame = +2 Query: 347 SWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 S G K + ++ + A++ + DA++ +++E PHL++P+G+ Sbjct: 32 SEGNKRLDSVNSIVSNASV---IVSDAYSGMIEENPHLISPSGN 72
>NBEA_MOUSE (Q9EPN1) Protein neurobeachin (Lysosomal trafficking regulator 2)| Length = 2936 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 268 GARAHSPHVSPFRVWSLRGGWLKLFWHTLDPVLHLLVDEAARYLHAFR 125 G A + + P W + G+ W +DP+ ++ VD+ YL+ FR Sbjct: 227 GCSAAAIALPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFR 274
>LRBA_HUMAN (P50851) Lipopolysaccharide-responsive and beige-like anchor| protein (CDC4-like protein) (Beige-like protein) Length = 2863 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 268 GARAHSPHVSPFRVWSLRGGWLKLFWHTLDPVLHLLVDEAARYLHAFRRHANL 110 G A + + P W + G+ W +DPV ++ VD+ YL+ FR L Sbjct: 211 GKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGL 263
>NBEA_HUMAN (Q8NFP9) Protein neurobeachin (Lysosomal trafficking regulator 2)| (Protein BCL8B) Length = 2946 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 268 GARAHSPHVSPFRVWSLRGGWLKLFWHTLDPVLHLLVDEAARYLHAFR 125 G A + + P W + G+ W +DP+ ++ VD+ YL+ FR Sbjct: 237 GCSAAAIALPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFR 284
>IDI2_STAHJ (Q4L8K4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/51 (29%), Positives = 30/51 (58%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEG 451 E V+P+G E+ +D+ A ++ ++V + +GFG+SK+ + L+ G Sbjct: 155 ELVMPEGNREFSTWLDNVAA-IVQRVDVPVIIKEVGFGMSKELYKDLIDVG 204
>CHS1_SCHPO (P30597) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) Length = 859 Score = 30.4 bits (67), Expect = 3.9 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Frame = -3 Query: 480 LLPVGARRCGPSFIKEVNASFDKPNPIAAI-SATTSMAEIIFAPQESIVSFHSGNPSGIT 304 L P A CG + + NP+ A + M+ I+ P ES+ F S P + Sbjct: 360 LNPQVAGACGEIVVMKGKLGSGLINPLVATQNFEYKMSNILDKPVESVFGFISVLPGAFS 419 Query: 303 GSAFSSLKRVFEGRGPTLHMYR 238 F +L+ +G GP ++ Sbjct: 420 AYRFEALQNDSQGNGPLASYFK 441
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2 Query: 206 PATPKGPDPKWRYMWRVGPRPSNTRFKELNAEPVIPD--GLPEWKETMDSW 352 PA P G DP RY W G + R K V PD L + ++ +D+W Sbjct: 741 PAVPPGEDPDGRY-WVSGRNEAEAREKAAKEFGVSPDKISLQQDEDVLDTW 790
>UVRA_RHIME (P56899) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 973 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Frame = +2 Query: 164 EMQDRIKSMPEEFQPATPKGPDPKWRYMWRVGPRPSNTRFKELNAEPVIPDGLPEWKETM 343 ++ R + EE Q A G K + ++ G R NT E ++P+ WKET Sbjct: 353 KLGSRWSELSEEAQEAILHGTKDKITFHYQDGARSYNTT---KTFEGIVPNLERRWKETD 409 Query: 344 DSWGAKMISAIEVVAEM-AAIGFGLSKDA 427 +W + I A A G+ L +A Sbjct: 410 SAWAREEIERYMSAAPCPACAGYRLKPEA 438
>YRR2_CAEEL (Q09345) Hypothetical protein R144.2| Length = 823 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Frame = +1 Query: 58 ARSDDSKRLQXAPPP--PLPGWRDA*RRGG------TSQPRRQGDARQDQEYARRVSTSH 213 ARS S R Q PP P+PG +A +RGG Q R G A + Q S Sbjct: 574 ARSPSSPRNQTPPPANLPIPGMNNAGQRGGYHNRHQPQQNARWGGANKQQNIPPPPSDPS 633 Query: 214 P*GTRPE 234 P G+ E Sbjct: 634 PIGSGVE 640
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 30.0 bits (66), Expect = 5.1 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2 Query: 206 PATPKGPDPKWRYMWRVGPRPSNTRFKELNAEPVIPD--GLPEWKETMDSW 352 PA P G DP RY W G + R K V PD L + ++ +D+W Sbjct: 740 PAVPPGEDPDGRY-WVSGRTEAEAREKAAREFGVSPDKISLQQDEDVLDTW 789
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 30.0 bits (66), Expect = 5.1 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2 Query: 206 PATPKGPDPKWRYMWRVGPRPSNTRFKELNAEPVIPD--GLPEWKETMDSW 352 PA P G DP RY W G + R K V PD L + ++ +D+W Sbjct: 741 PAVPPGEDPDGRY-WVSGRTEAEAREKAAREFGVSPDKISLQQDEDVLDTW 790
>IDI2_STAAW (Q8NV55) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAU (P58052) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAS (Q6G6X4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAR (Q6GE88) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAN (P99172) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAM (P65102) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAC (Q5HDL0) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>IDI2_STAAB (Q2YYY9) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 299 EPVIPDGLPEWKETMDSWGAKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGS 478 E V+P+G E+ +D+ A ++S + V + +GFG+SK+ L + G + +G Sbjct: 155 ELVMPEGNREFVTWLDNI-ASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGK 213 Query: 479 NLLRHGSEGTVFAGF------HYDLNFLTIHGRSRFPGL 577 GT F + D+++L+ G+S L Sbjct: 214 G-------GTNFVDIENERRANKDMDYLSSWGQSTVESL 245
>NCKX_DROME (Q9U6A0) Sodium/potassium/calcium exchanger| (Na(+)/K(+)/Ca(2+)-exchange protein) Length = 856 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 217 RGGWLKLFWHTLDPVLHLLVDEAARYLHA 131 R G L+L HT+DP+ VDE A LHA Sbjct: 569 RHGLLQLMIHTIDPLHDGKVDEKATQLHA 597
>GBRT_HUMAN (Q9UN88) Gamma-aminobutyric-acid receptor theta subunit precursor| (GABA(A) receptor) Length = 632 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +2 Query: 377 EVVAEMAAIGFGLS---KDAFTSLMKEGPHLLAPTGSNLLRHGSEGTVFAGFHYDLN 538 E+ + A G G++ +D+ SL + H P+G +L HG +G AG+ D N Sbjct: 481 EIRNRVEAHGHGVTHDHEDSNESLSSDERHGHGPSGKPMLHHGEKGVQEAGWDLDDN 537 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,127,104 Number of Sequences: 219361 Number of extensions: 1966533 Number of successful extensions: 6385 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5976 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6369 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
