No.
Definition
Score (bits)
E Value
1 ref|NM_192647.1| Oryza sativa (japonica cultivar-group), predic...
90
1e-14
2 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
90
1e-14
3 dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic D...
90
1e-14
4 dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic D...
90
1e-14
5 ref|NM_192667.1| Oryza sativa (japonica cultivar-group), predic...
72
3e-09
6 dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic D...
72
3e-09
7 ref|NM_192641.1| Oryza sativa (japonica cultivar-group), predic...
62
3e-06
8 ref|NM_192643.1| Oryza sativa (japonica cultivar-group), predic...
60
1e-05
9 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.038
10 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
48
0.038
11 emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...
48
0.038
12 gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa...
44
0.60
13 gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome...
42
2.4
14 gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome...
42
2.4
15 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.4
16 gb|AC114291.2| Homo sapiens chromosome 5 clone CTD-3080P12, comp...
42
2.4
17 dbj|AK120272.1| Oryza sativa (japonica cultivar-group) cDNA clon...
42
2.4
18 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
42
2.4
19 ref|XM_474112.1| Oryza sativa (japonica cultivar-group), predic...
40
9.3
20 ref|NM_192644.1| Oryza sativa (japonica cultivar-group), predic...
40
9.3
21 gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome...
40
9.3
22 gb|AC114998.13| Mus musculus chromosome 8, clone RP23-476P11, co...
40
9.3
23 gb|AC108820.13| Mus musculus chromosome 8, clone RP23-10I8, comp...
40
9.3
24 emb|AL359258.23| Human DNA sequence from clone RP11-483I13 on ch...
40
9.3
25 gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, comple...
40
9.3
26 gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-2...
40
9.3
27 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.3
28 gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, comple...
40
9.3
29 gb|AC007677.3| Homo sapiens BAC clone RP11-86N1 from 2, complete...
40
9.3
30 dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...
40
9.3
31 dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.3
32 dbj|AK072103.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.3
33 gb|AC154661.2| Mus musculus BAC clone RP24-274N1 from 12, comple...
40
9.3
34 emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clon...
40
9.3
35 emb|AL732337.2| Oryza sativa genomic DNA, chromosome 4, BAC clon...
40
9.3
36 emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4,...
40
9.3
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 89.7 bits (45), Expect = 1e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 115 gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 174
|||||||| || ||||| ||||||| |||||| ||| ||| |||| |||||||| |||
Sbjct: 23668389 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 23668448
Query: 175 tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 234
|| ||| ||||||||| ||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 23668449 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 23668508
Query: 235 c 235
|
Sbjct: 23668509 c 23668509
Score = 71.9 bits (36), Expect = 3e-09
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 190 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 249
|||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 23784272 gactgctgtcggtggaacggcgtcgggtgcagcaacaggaccggccatgtcgtcaagctc 23784331
Query: 250 gacctccg 257
||||||||
Sbjct: 23784332 gacctccg 23784339
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 172 tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 230
||||| ||| |||||||||||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 23631324 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 23631266
Score = 60.0 bits (30), Expect = 1e-05
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 460 ccaccgcagctgggtaatctctccaacttacggtactt 497
||||||||||||||||||||||||||||| || |||||
Sbjct: 23638490 ccaccgcagctgggtaatctctccaacttgcgctactt 23638453
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 386 taccggagttcatgggttctctccatcagctgagatatctcgacctatc 434
||||||||||| ||||||||||||| | ||||||| ||||||||||||
Sbjct: 23638564 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 23638516
Score = 52.0 bits (26), Expect = 0.002
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 ttcattggaaggataccaccgcagctgggtaatctctccaac 486
||||| || |||||||||||| |||| |||||||||||||||
Sbjct: 23663502 ttcatcgggaggataccaccgtagctcggtaatctctccaac 23663461
Score = 46.1 bits (23), Expect = 0.15
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 157 cctggcaacctcctttcgtcttggaagggtgacga 191
||||| |||||||||||||| ||| ||||||||||
Sbjct: 23638799 cctggaaacctcctttcgtcatgggagggtgacga 23638765
Score = 40.1 bits (20), Expect = 9.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 190 gactgctgccggtggaaggg 209
||||||||||||||||||||
Sbjct: 23647293 gactgctgccggtggaaggg 23647274
>dbj|AP003330.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1085F01
Length = 163671
Score = 89.7 bits (45), Expect = 1e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 115 gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 174
|||||||| || ||||| ||||||| |||||| ||| ||| |||| |||||||| |||
Sbjct: 46093 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 46152
Query: 175 tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 234
|| ||| ||||||||| ||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 46153 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 46212
Query: 235 c 235
|
Sbjct: 46213 c 46213
Score = 71.9 bits (36), Expect = 3e-09
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 190 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 249
|||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 161976 gactgctgtcggtggaacggcgtcgggtgcagcaacaggaccggccatgtcgtcaagctc 162035
Query: 250 gacctccg 257
||||||||
Sbjct: 162036 gacctccg 162043
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 172 tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 230
||||| ||| |||||||||||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 9028 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 8970
Score = 60.0 bits (30), Expect = 1e-05
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 460 ccaccgcagctgggtaatctctccaacttacggtactt 497
||||||||||||||||||||||||||||| || |||||
Sbjct: 16194 ccaccgcagctgggtaatctctccaacttgcgctactt 16157
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 386 taccggagttcatgggttctctccatcagctgagatatctcgacctatc 434
||||||||||| ||||||||||||| | ||||||| ||||||||||||
Sbjct: 16268 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 16220
Score = 52.0 bits (26), Expect = 0.002
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 ttcattggaaggataccaccgcagctgggtaatctctccaac 486
||||| || |||||||||||| |||| |||||||||||||||
Sbjct: 41206 ttcatcgggaggataccaccgtagctcggtaatctctccaac 41165
Score = 46.1 bits (23), Expect = 0.15
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 157 cctggcaacctcctttcgtcttggaagggtgacga 191
||||| |||||||||||||| ||| ||||||||||
Sbjct: 16503 cctggaaacctcctttcgtcatgggagggtgacga 16469
Score = 40.1 bits (20), Expect = 9.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 190 gactgctgccggtggaaggg 209
||||||||||||||||||||
Sbjct: 24997 gactgctgccggtggaaggg 24978
>dbj|AP003278.5 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0518F01
Length = 154541
Score = 89.7 bits (45), Expect = 1e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 115 gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 174
|||||||| || ||||| ||||||| |||||| ||| ||| |||| |||||||| |||
Sbjct: 131088 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 131147
Query: 175 tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 234
|| ||| ||||||||| ||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 131148 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 131207
Query: 235 c 235
|
Sbjct: 131208 c 131208
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 172 tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 230
||||| ||| |||||||||||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 94023 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 93965
Score = 60.0 bits (30), Expect = 1e-05
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 460 ccaccgcagctgggtaatctctccaacttacggtactt 497
||||||||||||||||||||||||||||| || |||||
Sbjct: 101189 ccaccgcagctgggtaatctctccaacttgcgctactt 101152
Score = 58.0 bits (29), Expect = 4e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 386 taccggagttcatgggttctctccatcagctgagatatctcgacctatc 434
||||||||||| ||||||||||||| | ||||||| ||||||||||||
Sbjct: 101263 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 101215
Score = 52.0 bits (26), Expect = 0.002
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 445 ttcattggaaggataccaccgcagctgggtaatctctccaac 486
||||| || |||||||||||| |||| |||||||||||||||
Sbjct: 126201 ttcatcgggaggataccaccgtagctcggtaatctctccaac 126160
Score = 46.1 bits (23), Expect = 0.15
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 157 cctggcaacctcctttcgtcttggaagggtgacga 191
||||| |||||||||||||| ||| ||||||||||
Sbjct: 101498 cctggaaacctcctttcgtcatgggagggtgacga 101464
Score = 40.1 bits (20), Expect = 9.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 190 gactgctgccggtggaaggg 209
||||||||||||||||||||
Sbjct: 109992 gactgctgccggtggaaggg 109973
>gb|AY534123.1 |SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
(WM1.12) genes, complete cds; transposons Ophelia2,
Angela3s, and XJ3, complete sequence; LRR protein WM1.3
(WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
Jody, Angela, and XJ and Stowaway MITE, complete sequence;
LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
genes, complete cds; transposons XJ, XA, Angela, and Fred
and WM1.11 gene, complete sequence; RPM1-like sequence and
LRR protein WM1.10 (WM1.10) genes, complete cds; and
transposon XJ, complete sequence
Length = 198649
Score = 44.1 bits (22), Expect = 0.60
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 193 tgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagcttgac 252
||||||||||||| |||||| ||||||||| |||| |||||||| |||||||| ||
Sbjct: 109365 tgctgccggtggagaggcgtcagttgcagcaaccgaacaggccatgtcatcaagcttcac 109424
Query: 253 ct 254
||
Sbjct: 109425 ct 109426
Score = 42.1 bits (21), Expect = 2.4
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 190 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 249
|||||||||||||||| |||||| |||| ||||| ||| |||||||| ||||||||
Sbjct: 196777 gactgctgccggtggagaggcgtcagctgctgcaaccaaacaggccatgtcatcaagctt 196718
Query: 250 gacct 254
||||
Sbjct: 196717 cacct 196713
Score = 40.1 bits (20), Expect = 9.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 190 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 249
|||||||||||||||| || ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 190910 gactgctgccggtggagaggtgtcagttgcagcaaccgaacaggccatgtcatcaagctt 190851
Score = 40.1 bits (20), Expect = 9.3
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 190 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 249
|||||||||||||||| || ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 37806 gactgctgccggtggagaggagtcagttgcagcaaccgaacaggccatgtcatcaagctt 37865
Score = 40.1 bits (20), Expect = 9.3
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 190 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 249
|||||||||||||||| ||||| |||||||||| |||| ||||| || ||||||||
Sbjct: 23952 gactgctgccggtggagaggcgtaagctgcagcaaccgaacaggccacgtcatcaagctt 24011
>emb|AL606635.3 |OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21,
complete sequence
Length = 140626
Score = 40.1 bits (20), Expect = 9.3
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 187 gacgactgctgccggtggaagggcgtctactgcagcaaca 226
|||||||||||| |||| || ||||| ||||||||||||
Sbjct: 18501 gacgactgctgcttgtgggagcgcgtcaactgcagcaaca 18540
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,144,724
Number of Sequences: 3902068
Number of extensions: 5144724
Number of successful extensions: 88796
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88380
Number of HSP's gapped (non-prelim): 417
length of query: 682
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 659
effective length of database: 17,143,297,704
effective search space: 11297433186936
effective search space used: 11297433186936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)