ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalh19 |
|---|---|
| Clone Library Name | barley_pub |
>NOT4_YEAST (P34909) General negative regulator of transcription subunit 4| Length = 587 Score = 50.1 bits (118), Expect = 5e-06 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = +1 Query: 502 CPICYEDLDPTDSSFLPCPCGFHLCLFC 585 CP+C E +D TD +F PCPCG+ +C FC Sbjct: 33 CPLCIEPMDITDKNFFPCPCGYQICQFC 60
>CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3| ubiquitin protein ligase CNOT4) (CCR4-associated factor 4) (Potential transcriptional repressor NOT4Hp) Length = 575 Score = 46.2 bits (108), Expect = 7e-05 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +1 Query: 493 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFC 585 P+ CP+C E L+ D +F PC CG+ +C FC Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFC 41
>CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3| ubiquitin protein ligase CNOT4) (CCR4-associated factor 4) (Potential transcriptional repressor NOT4Hp) Length = 575 Score = 46.2 bits (108), Expect = 7e-05 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +1 Query: 493 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFC 585 P+ CP+C E L+ D +F PC CG+ +C FC Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFC 41
>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription| C16C9.04c Length = 489 Score = 45.8 bits (107), Expect = 9e-05 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +1 Query: 496 LSCPICYEDLDPTDSSFLPCPCGFHLCLFC 585 + CP+C E++D +D +F PC CG+ +C FC Sbjct: 16 MCCPLCMEEIDISDKNFKPCQCGYRVCRFC 45
>PPIB_MYCTU (Q50639) Probable peptidyl-prolyl cis-trans isomerase B (EC| 5.2.1.8) (PPIase B) (Rotamase B) Length = 308 Score = 37.0 bits (84), Expect = 0.042 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Frame = +1 Query: 220 VADALSVDDNSHCHQSFGTTIPPTATSDSVPQANTSKRTEPIRSNARAWA-------PDD 378 VA ++V N HQS + P + S S PQA T+ P + +A A PD Sbjct: 62 VAVVVTVVVNKDDHQSTTSATPTDSASTSPPQAATAPPLPPFKPSANLGANCQYPPSPDK 121 Query: 379 TFRPQSLPSISKQASFPARI 438 +P LP K + PA++ Sbjct: 122 AVKPVKLPRTGKVPTDPAQV 141
>DNAJ_BARHE (Q6G553) Chaperone protein dnaJ| Length = 381 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 409 SKQASFPARIGNCWGMGMSAAHQSILSMPLSCPICY 516 +K+ S P G C G G A Q S+ +CP+C+ Sbjct: 156 AKKGSKPQTCGTCHGAGRVRAAQGFFSIERTCPVCH 191
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 487 SMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFC 585 S P SCPIC E L +P + PCG + CL C Sbjct: 4 SGPFSCPICLEPLREP-----VTLPCGHNFCLAC 32
>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in| astrocytoma protein) (RING finger protein 100) Length = 638 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 487 SMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFC 585 S P SCPIC E L +P + PCG + CL C Sbjct: 4 SGPFSCPICLEPLREP-----VTLPCGHNFCLAC 32
>PXDC1_MOUSE (Q91ZV7) Plexin domain-containing protein 1 precursor (Tumor| endothelial marker 7) Length = 500 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -1 Query: 247 YHRLKVHQQQLPNHPAPRFPPQGRCLCHHPRHHSHSWNWTIDCSHC 110 YHR+++ ++ A F P CL H S N T +CS C Sbjct: 281 YHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSNLTFNCSWC 326
>TSCOT_MOUSE (Q8CA03) Thymic stromal cotransporter protein| Length = 479 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 389 GRNVSSGAQALALLRIGSVLFDVFA*GTESLVAVGGIVVPKLWWQ 255 G+ SS + +ALL +G++++D+ A GT ++A+ + P W Q Sbjct: 274 GKGKSSQREVVALLFVGAIIYDLAAVGTVDVMALFVLKEPLHWNQ 318
>DZIP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) (DAZ-interacting| protein 3 homolog) Length = 1204 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 502 CPICYEDLDPTDSSFLPCPCGFH 570 C IC+E+L P + S LPC FH Sbjct: 1144 CVICHENLSPENLSVLPCAHKFH 1166
>CRNA_EMENI (P22152) Nitrate transporter (Nitrate permease)| Length = 507 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/90 (23%), Positives = 40/90 (44%) Frame = +1 Query: 157 EDDDTGSGPEEENGVLDDWEAVADALSVDDNSHCHQSFGTTIPPTATSDSVPQANTSKRT 336 +D TG E + +D + + VD +S QS + PP+ + ++P Sbjct: 220 DDTPTGKWSERHIWMKEDTQTASKGNIVDLSSGA-QSSRPSGPPSIIAYAIPDVEKKGTE 278 Query: 337 EPIRSNARAWAPDDTFRPQSLPSISKQASF 426 P+ ++A D FR ++ S S++ +F Sbjct: 279 TPLEPQSQAIGQFDAFRANAVASPSRKEAF 308
>DZIP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) (DAZ-interacting| protein 3) (RNA-binding ubiquitin ligase of 138 kDa) (hRUL138) Length = 1208 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 502 CPICYEDLDPTDSSFLPCPCGFH 570 C IC+E+L P + S LPC FH Sbjct: 1148 CVICHENLSPENLSVLPCAHKFH 1170
>DEOB_RHIME (Q92T47) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 406 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +1 Query: 367 APDDTFRPQSLPSISKQASFPARIGNCWGMGMS-AAHQSILSMPLSCPICYEDLD 528 A D F P+ + +I ++ P +GNC G A M PICY D Sbjct: 121 AEGDAFPPELVEAICREGDVPGILGNCHASGTDIIARHGEEHMRSGKPICYTSSD 175
>DEOB_AGRT5 (Q8UJ04) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 406 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +1 Query: 376 DTFRPQSLPSISKQASFPARIGNCWGMG----MSAAHQSILSMPLSCPICYEDLD 528 D F P+ + +I +QA P +GNC G + + I S PICY D Sbjct: 124 DAFSPELVEAICRQADIPGILGNCHASGTEIIAALGEEHIRS---GKPICYTSSD 175
>RFIP1_HUMAN (Q6WKZ4) Rab11 family-interacting protein 1 (Rab11-FIP1)| (Rab-coupling protein) Length = 1283 Score = 30.0 bits (66), Expect = 5.1 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +1 Query: 286 PTATSDSVPQANTSKRTEPIRSNARAWA--PDDTFRPQSLP---SISKQASFPARIGNCW 450 P +S PQ K + A+ A P T P SLP S S QAS P+ +G+ Sbjct: 525 PPISSPRAPQTRAVKPRLEVSPEAQPTARLPSPTDSPSSLPPLPSSSGQASVPSELGHGA 584 Query: 451 GMGMSAAHQ--SILSMPLSCPI 510 S + S LS P++ PI Sbjct: 585 DTQSSESPSVFSSLSSPIAAPI 606
>DNAJ_RHILE (O33529) Chaperone protein dnaJ (Fragment)| Length = 234 Score = 30.0 bits (66), Expect = 5.1 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +1 Query: 409 SKQASFPARIGNCWGMGMSAAHQSILSMPLSCPICYEDLDPTDSSFLPCPC 561 +K + P G C G G A Q S+ +CP C+ +P PC Sbjct: 157 AKPGTQPKNCGTCQGTGRVRAAQGFFSIERTCPTCH-----GRGQIIPDPC 202
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -1 Query: 244 HRLKVHQQQLPNHPAPRFPPQGRCLCHHPRHHSHS 140 H HQ Q HPA PQ +HP HHSHS Sbjct: 132 HHPYPHQHQ---HPAHHPHPQPHHQQNHPHHHSHS 163
>RIP_RAT (Q4G2Y1) RPA-interacting protein| Length = 219 Score = 30.0 bits (66), Expect = 5.1 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +1 Query: 493 PLSCPICYEDLDPTDSSFLPCPCGFHL 573 PL CP+C + +S + CPCG H+ Sbjct: 134 PLICPVCIKYNLRIMNSVVTCPCGLHI 160
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -1 Query: 244 HRLKVHQQQLPNHPAPRFPPQGRCLCHHPRHHSHS 140 H HQ Q HPA PQ +HP HHSHS Sbjct: 287 HHPYPHQHQ---HPAHHPHPQPHHQQNHPHHHSHS 318
>RC3H1_MOUSE (Q4VGL6) Roquin (RING finger and C3H zinc finger protein 1)| (Sanroque protein) Length = 1130 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 Query: 496 LSCPICYEDLDPTDSSFLPCPCGFHLCLFC 585 LSCPIC + D T + CG +C C Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMC 41
>NPAS2_HUMAN (Q99743) Neuronal PAS domain protein 2 (Neuronal PAS2) (Member of| PAS protein 4) (MOP4) Length = 824 Score = 29.6 bits (65), Expect = 6.7 Identities = 23/95 (24%), Positives = 43/95 (45%) Frame = +1 Query: 274 TTIPPTATSDSVPQANTSKRTEPIRSNARAWAPDDTFRPQSLPSISKQASFPARIGNCWG 453 T+ P+A+S S +++ + +EP + + A T P++ + A+ P + G Sbjct: 404 TSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEAST------PALPRSATLPQELP-VPG 456 Query: 454 MGMSAAHQSILSMPLSCPICYEDLDPTDSSFLPCP 558 + +A + L PLSC + + L T P P Sbjct: 457 LSQAATMPAPLPSPLSCDLTQQLLPQTVLQSTPAP 491
>DNAJ_RHITR (Q93S23) Chaperone protein dnaJ (Fragment)| Length = 331 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +1 Query: 409 SKQASFPARIGNCWGMGMSAAHQSILSMPLSCPICYEDLDPTDSSFLPCPC 561 +K + P G C G G A Q S+ +CP C+ +P PC Sbjct: 138 AKPGTQPKTCGTCQGSGRVRAAQGFFSVERTCPTCH-----GRGQIIPDPC 183
>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1114 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 Query: 496 LSCPICYEDLDPTDSSFLPCPCGFHLCLFC 585 LSCPIC + D T + CG +C C Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMC 41
>K1718_MOUSE (Q3UWM4) Protein KIAA1718| Length = 940 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -1 Query: 202 APRFPPQGRCLCHHPRHHSHSWNWTIDCSHC*DWGHHHC 86 AP PP C+C P + + I+C C DW H C Sbjct: 31 APPPPPPVYCVCRQPYDVNR---FMIECDVCKDWFHGSC 66
>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1133 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 Query: 496 LSCPICYEDLDPTDSSFLPCPCGFHLCLFC 585 LSCPIC + D T + CG +C C Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMC 41
>K1718_HUMAN (Q6ZMT4) Protein KIAA1718| Length = 941 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -1 Query: 202 APRFPPQGRCLCHHPRHHSHSWNWTIDCSHC*DWGHHHC 86 AP PP C+C P + + I+C C DW H C Sbjct: 31 APPPPPPVYCVCRQPYDVNR---FMIECDICKDWFHGSC 66
>ZEST_DROVI (Q24762) Regulatory protein zeste| Length = 618 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Frame = +2 Query: 284 PQQLQVTRCLKQIHQKEQSRF--VAMQELGHQMIRSVHRACPVSPSRQASRRGLATAGEW 457 PQQ+ + + Q HQ+ Q+R Q+L Q + + + V+ + ++ ++A Sbjct: 362 PQQITLAQYQAQQHQQAQARLRPGQAQQLAQQQLAAQQQQLAVAAAAAHQQQNSSSAAAV 421 Query: 458 V*VQHIRVSSRCHYLAQYAMRILTQQTQASSPALA 562 V QH + + + Q + + QQ Q A A Sbjct: 422 VVQQHQQQQQQQQHQQQQQQQQVQQQQQQQQQAAA 456
>PXDC1_HUMAN (Q8IUK5) Plexin domain-containing protein 1 precursor (Tumor| endothelial marker 7) (Tumor endothelial marker 3) Length = 500 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = -1 Query: 247 YHRLKVHQQQLPNHPAPRFPPQGRCLCHHPRHHSHSWNWTIDCSHC 110 YHR+++ ++ + A F P CL H S + T +CS C Sbjct: 280 YHRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWC 325
>RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 528 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/76 (28%), Positives = 34/76 (44%) Frame = +1 Query: 160 DDDTGSGPEEENGVLDDWEAVADALSVDDNSHCHQSFGTTIPPTATSDSVPQANTSKRTE 339 DDD SG +E++ L+ AVA + DD+ + T A+ D V + S+ Sbjct: 157 DDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAE---PTEKDKASGDFVWDEDESEALR 213 Query: 340 PIRSNARAWAPDDTFR 387 R +A A D+ R Sbjct: 214 QARKDAELTASADSVR 229
>RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 528 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/76 (28%), Positives = 34/76 (44%) Frame = +1 Query: 160 DDDTGSGPEEENGVLDDWEAVADALSVDDNSHCHQSFGTTIPPTATSDSVPQANTSKRTE 339 DDD SG +E++ L+ AVA + DD+ + T A+ D V + S+ Sbjct: 157 DDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAE---PTEKDKASGDFVWDEDESEALR 213 Query: 340 PIRSNARAWAPDDTFR 387 R +A A D+ R Sbjct: 214 QARKDAELTASADSVR 229
>CAC1D_RAT (P27732) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 2) (RAT brain class D) (RBD) Length = 2203 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = -1 Query: 256 NDCYHRLKVHQQQLP---NHPAPRFPPQGRCLCHHPRHHSHS 140 N + L V + +P + P FPP G +CH+ HH+H+ Sbjct: 1748 NTTHRPLHVQRPSIPPASDTEKPLFPPAGNSVCHN--HHNHN 1787
>CAC1D_HUMAN (Q01668) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 2) Length = 2161 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = -1 Query: 256 NDCYHRLKVHQQQLP---NHPAPRFPPQGRCLCHHPRHHSHS 140 N + L V + +P + P FPP G +CH+ HH+H+ Sbjct: 1705 NTTHRPLHVQRPSIPPASDTEKPLFPPAGNSVCHN--HHNHN 1744
>CAR11_HUMAN (Q9BXL7) Caspase recruitment domain-containing protein 11| (CARD-containing MAGUK protein 3) (Carma 1) Length = 1147 Score = 29.3 bits (64), Expect = 8.7 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +1 Query: 226 DALSVDDNSHCHQSFGTTIPPTATSDSVPQANTSKRTEPIRSNARAWAPDDTFRPQSLPS 405 DAL +DD+SH SFG + +++S + + E + R ++ + FRP Sbjct: 590 DALDLDDDSHERYSFGPSSIHSSSSSHQSEGLDAYDLEQVNLMFRKFSLERPFRPS---- 645 Query: 406 ISKQASFPARIGNCWGMGMSAAHQSI 483 +G+ G G S H ++ Sbjct: 646 -------VTSVGHVRGPGPSVQHTTL 664 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,169,920 Number of Sequences: 219361 Number of extensions: 1723824 Number of successful extensions: 6043 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 5716 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6019 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
