ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalh18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
2dbj|AK066617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
3gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
8emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial se... 68 2e-08
9emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa... 68 2e-08
10gb|AY110802.1| Zea mays CL50258_1 mRNA sequence 64 4e-07
11gb|AY104972.1| Zea mays PCO068557 mRNA sequence 60 6e-06
12gb|BT017302.1| Zea mays clone EL01N0316C05.c mRNA sequence 58 2e-05
13gb|AF161719.1|AF161719 Triticum aestivum vacuolar targeting rece... 48 0.022
14gb|AY105262.1| Zea mays PCO087823 mRNA sequence 48 0.022
15gb|U79961.1|ZMU79961 Zea mays vacuolar sorting receptor homolog ... 48 0.022
16ref|XM_479541.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.086
17dbj|AK072667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.086
18emb|AL645682.14| Mouse DNA sequence from clone RP23-287B22 on ch... 42 1.4
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
20dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, c... 40 5.3
23gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, co... 40 5.3
24ref|XM_580994.2| PREDICTED: Bos taurus similar to nexilin (LOC50... 40 5.3
25emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, N... 40 5.3
26gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, c... 40 5.3
27gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chrom... 40 5.3
28gb|AC133522.3| Homo sapiens BAC clone RP11-1277J4 from 2, comple... 40 5.3
29dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.3
30dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 5.3 
>dbj|AK102691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103D10, full
            insert sequence
          Length = 2549

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 67/76 (88%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagtgtacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcg 60
            |||| ||||||||  || ||||| ||||||||| |||||| | |||||||||||||||| 
Sbjct: 2006 cagtatacaagtacaggatccggaggtacatgg-attcagagatccgcgccatcatggcc 2064

                            
Query: 61   cagtacatgcccctgg 76
            ||||||||||||||||
Sbjct: 2065 cagtacatgcccctgg 2080
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>dbj|AK066617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B02, full
            insert sequence
          Length = 2553

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 67/76 (88%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagtgtacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcg 60
            |||| ||||||||  || ||||| ||||||||| |||||| | |||||||||||||||| 
Sbjct: 2067 cagtatacaagtacaggatccggaggtacatgg-attcagagatccgcgccatcatggcc 2125

                            
Query: 61   cagtacatgcccctgg 76
            ||||||||||||||||
Sbjct: 2126 cagtacatgcccctgg 2141
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>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0004B05, complete sequence
          Length = 121223

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                 
Query: 25    ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
             ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 20613 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 20563
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                  
Query: 25     ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
              ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 783059 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 783009
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                  
Query: 25     ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
              ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 742320 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 742270
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                  
Query: 25     ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
              ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 742322 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 742272
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                  
Query: 25     ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
              ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 783059 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 783009
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>emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23
            of library OSJNBb from chromosome 12 of cultivar
            Nipponbare of ssp. japonica of Oryza sativa (rice),
            complete sequence
          Length = 12281

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 25   ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
            ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 4831 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 4781
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>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa
           from chromosome 11 of cultivar Nipponbare of ssp.
           japonica of Oryza sativa (rice), complete sequence
          Length = 181322

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                               
Query: 25  ggtacatggnattcagngntccgcgccatcatggcgcagtacatgcccctgg 76
           ||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 652 ggtacatgg-attcagagatccgcgccatcatggcccagtacatgcccctgg 702
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>gb|AY110802.1| Zea mays CL50258_1 mRNA sequence
          Length = 661

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcg 60
           |||||||||||||  || ||||| ||||||||| | || | | |||| ||||||||||| 
Sbjct: 344 cagtgtacaagtacaggatccggaggtacatgg-actccgagatccgtgccatcatggct 286

                           
Query: 61  cagtacatgcccctgg 76
           ||||||||||||||||
Sbjct: 285 cagtacatgcccctgg 270
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>gb|AY104972.1| Zea mays PCO068557 mRNA sequence
          Length = 1725

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    gtgtacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcgca 62
            |||||||||||  || ||||| ||||||||| | || | | |||||||||||||||| ||
Sbjct: 1443 gtgtacaagtacaggatccggaggtacatgg-actcggagatccgcgccatcatggccca 1501

                          
Query: 63   gtacatgcccctgg 76
            ||||||||| ||||
Sbjct: 1502 gtacatgcctctgg 1515
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>gb|BT017302.1| Zea mays clone EL01N0316C05.c mRNA sequence
          Length = 622

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtgtacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcgca 62
           |||||||||||  || ||||| ||||||||| | || | | |||||||||||||||| ||
Sbjct: 179 gtgtacaagtacaggatccggaggtacatgg-actcggagatccgcgccatcatggccca 237

                    
Query: 63  gtacatgcc 71
           |||||||||
Sbjct: 238 gtacatgcc 246
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>gb|AF161719.1|AF161719 Triticum aestivum vacuolar targeting receptor bp-80 mRNA, complete
            cds
          Length = 2293

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 44   tccgcgccatcatggcgcagtacatgcc 71
            |||||||||||||||| |||||||||||
Sbjct: 1847 tccgcgccatcatggctcagtacatgcc 1874
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>gb|AY105262.1| Zea mays PCO087823 mRNA sequence
          Length = 1974

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 35   attcagngntccgcgccatcatggcgcagtacatgcccctgg 76
            |||||| | |||| ||||||||||| ||||||||||| ||||
Sbjct: 1457 attcagagatccgtgccatcatggctcagtacatgcctctgg 1498
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>gb|U79961.1|ZMU79961 Zea mays vacuolar sorting receptor homolog mRNA, partial cds
          Length = 822

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 35  attcagngntccgcgccatcatggcgcagtacatgcccctgg 76
           |||||| | |||| ||||||||||| ||||||||||| ||||
Sbjct: 365 attcagagatccgtgccatcatggctcagtacatgcctctgg 406
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>ref|XM_479541.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2450

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 59/71 (83%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                        
Query: 6    tacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcgcagta 65
            ||||| |||||| | ||| | ||||||| |||||| | | || || |||||||| |||||
Sbjct: 1955 tacaaatatcggctacggagttacatgg-attcagagattcgtgcgatcatggctcagta 2013

                       
Query: 66   catgcccctgg 76
            |||||||||||
Sbjct: 2014 catgcccctgg 2024
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>dbj|AK072667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134F15, full
            insert sequence
          Length = 2450

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 59/71 (83%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                        
Query: 6    tacaagtatcggntccggnggtacatggnattcagngntccgcgccatcatggcgcagta 65
            ||||| |||||| | ||| | ||||||| |||||| | | || || |||||||| |||||
Sbjct: 1955 tacaaatatcggctacggagttacatgg-attcagagattcgtgcgatcatggctcagta 2013

                       
Query: 66   catgcccctgg 76
            |||||||||||
Sbjct: 2014 catgcccctgg 2024
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>emb|AL645682.14| Mouse DNA sequence from clone RP23-287B22 on chromosome 11 Contains a
             CpG island, complete sequence
          Length = 198340

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 352   agtccaaagttcaaaatcatt 372
             |||||||||||||||||||||
Sbjct: 15533 agtccaaagttcaaaatcatt 15553
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 52       atcatggcgcagtacatgcccctgg 76
                |||||||| ||||||||||||||||
Sbjct: 28756408 atcatggctcagtacatgcccctgg 28756384
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>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1205_F02
          Length = 112862

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    atcatggcgcagtacatgcccctgg 76
             |||||||| ||||||||||||||||
Sbjct: 63969 atcatggctcagtacatgcccctgg 63945
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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008J01
          Length = 159900

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    atcatggcgcagtacatgcccctgg 76
             |||||||| ||||||||||||||||
Sbjct: 14094 atcatggctcagtacatgcccctgg 14070
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>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence
          Length = 214202

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 216   accgttctgtaaatttctagatta 239
             ||||||||| ||||||||||||||
Sbjct: 27411 accgttctgaaaatttctagatta 27434
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>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence
          Length = 186115

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   accgttctgtaaatttctagatta 239
             ||||||||| ||||||||||||||
Sbjct: 45136 accgttctgaaaatttctagatta 45113
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>ref|XM_580994.2| PREDICTED: Bos taurus similar to nexilin (LOC504819), mRNA
          Length = 2745

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 agatgtgaagagcaacgccg 138
           ||||||||||||||||||||
Sbjct: 439 agatgtgaagagcaacgccg 458
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>emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, NICN1 gene, DAG1 gene and BSN
            gene (partial)
          Length = 162073

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 294  agagatgtttgtgccaggacatag 317
            ||||||||||||||||| ||||||
Sbjct: 5528 agagatgtttgtgccagaacatag 5505
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>gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, complete sequence
          Length = 26013

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tattaatcacccaaaagtgc 257
             ||||||||||||||||||||
Sbjct: 21581 tattaatcacccaaaagtgc 21562
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>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown, complete
              sequence
          Length = 221601

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    attattaatcacccaaaagt 255
              ||||||||||||||||||||
Sbjct: 202548 attattaatcacccaaaagt 202529
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>gb|AC133522.3| Homo sapiens BAC clone RP11-1277J4 from 2, complete sequence
          Length = 80803

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 350   acagtccaaagttcaaaatcatta 373
             |||||||||||| |||||||||||
Sbjct: 45321 acagtccaaagtccaaaatcatta 45298
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 44      tccgcgccatcatggcgcag 63
               ||||||||||||||||||||
Sbjct: 5191581 tccgcgccatcatggcgcag 5191600
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>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    gccatcatggcgcagtacatgccc 72
             ||||||||||| ||||||||||||
Sbjct: 50857 gccatcatggcacagtacatgccc 50880


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,554,267
Number of Sequences: 3902068
Number of extensions: 2554267
Number of successful extensions: 43086
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42992
Number of HSP's gapped (non-prelim): 91
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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