ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalh08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (M... 39 1e-04
2MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3) 32 3e-04
3MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503 32 0.004
4MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3) 32 0.008
5MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1) 27 0.21
6GLYA_BRUSU (Q8G1F1) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.1
7GLYA_BRUME (Q8YGG7) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.1
8GLYA_BRUAB (Q57DY5) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.1
9GLYA_BRUA2 (Q2YN95) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.1
10MT3_PICGL (Q40854) Metallothionein-like protein EMB30 30 5.4

>MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (MWMT3)|
          Length = 65

 Score = 38.5 bits (88), Expect(2) = 1e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 4/34 (11%)
 Frame = +2

Query: 62  QCVKKGDSYGIVMVDTEKSHLE----VHETAEND 151
           QCVKKG+SYGI +V+TEKS+++      E AE+D
Sbjct: 14  QCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHD 47



 Score = 26.2 bits (56), Expect(2) = 1e-04
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 31 CGNCDCADK 57
          CGNCDC DK
Sbjct: 4  CGNCDCVDK 12



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>MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3)|
          Length = 65

 Score = 32.0 bits (71), Expect(2) = 3e-04
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 19 MADKCGNCDCADK 57
          M+D CGNCDCADK
Sbjct: 1  MSDTCGNCDCADK 13



 Score = 31.6 bits (70), Expect(2) = 3e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 62  QCVKKGDSYGIVMVDTEKSHLEV---HETAEND 151
           QCVKKG SY   +++TEKS + V      AEND
Sbjct: 15  QCVKKGSSYTADIIETEKSIMTVVMDAPAAEND 47



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>MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503|
          Length = 63

 Score = 32.3 bits (72), Expect(2) = 0.004
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +1

Query: 19 MADKCGNCDCAD 54
          M+DKCGNCDCAD
Sbjct: 1  MSDKCGNCDCAD 12



 Score = 27.3 bits (59), Expect(2) = 0.004
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +2

Query: 62  QCVKKGDSYGIVMVDTEKSHLE 127
           QCVKKG+S  I +V+T+KS++E
Sbjct: 15  QCVKKGNS--IDIVETDKSYIE 34



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>MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3)|
          Length = 66

 Score = 31.6 bits (70), Expect(2) = 0.008
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 62  QCVKKGDSYGIVMVDTEKSHLE 127
           QCVKKG+SY +V+V+TE   ++
Sbjct: 15  QCVKKGNSYDLVIVETENRSMD 36



 Score = 26.9 bits (58), Expect(2) = 0.008
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 19 MADKCGNCDCAD 54
          M+ KC NCDCAD
Sbjct: 1  MSGKCDNCDCAD 12



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>MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1)|
          Length = 64

 Score = 26.9 bits (58), Expect(2) = 0.21
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 62  QCVKKGDSYGIVMVDTEKSHLE 127
           QC KKG S+ +V+V+TE   ++
Sbjct: 15  QCTKKGYSFDLVIVETENRSMD 36



 Score = 26.6 bits (57), Expect(2) = 0.21
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 19 MADKCGNCDCAD 54
          M+ KC NCDC+D
Sbjct: 1  MSSKCSNCDCSD 12



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>GLYA_BRUSU (Q8G1F1) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 473 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 324
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUME (Q8YGG7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 473 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 324
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUAB (Q57DY5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 473 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 324
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUA2 (Q2YN95) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 473 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 324
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>MT3_PICGL (Q40854) Metallothionein-like protein EMB30|
          Length = 60

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 19 MADKCGNCDCADK 57
          M+  CGNCDCADK
Sbjct: 1  MSSDCGNCDCADK 13


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,446,160
Number of Sequences: 219361
Number of extensions: 955808
Number of successful extensions: 2190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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