ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalh04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192647.1| Oryza sativa (japonica cultivar-group), predic... 90 1e-14
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
3dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
5ref|NM_192667.1| Oryza sativa (japonica cultivar-group), predic... 72 2e-09
6dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
7ref|NM_192641.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
8ref|NM_192643.1| Oryza sativa (japonica cultivar-group), predic... 60 9e-06
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.033
11emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.033
12gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 44 0.51
13gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
14gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
16gb|AC114291.2| Homo sapiens chromosome 5 clone CTD-3080P12, comp... 42 2.0
17dbj|AK120272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
19ref|XM_474112.1| Oryza sativa (japonica cultivar-group), predic... 40 8.0
20ref|NM_192644.1| Oryza sativa (japonica cultivar-group), predic... 40 8.0
21gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
22gb|AC114998.13| Mus musculus chromosome 8, clone RP23-476P11, co... 40 8.0
23gb|AC108820.13| Mus musculus chromosome 8, clone RP23-10I8, comp... 40 8.0
24emb|AL359258.23| Human DNA sequence from clone RP11-483I13 on ch... 40 8.0
25gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, comple... 40 8.0
26gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-2... 40 8.0
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
28gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, comple... 40 8.0
29gb|AC007677.3| Homo sapiens BAC clone RP11-86N1 from 2, complete... 40 8.0
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.0
31dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
32dbj|AK072103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
33gb|AC154661.2| Mus musculus BAC clone RP24-274N1 from 12, comple... 40 8.0
34emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 8.0
35emb|AL732337.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 8.0
36emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4,... 40 8.0

>ref|NM_192647.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Plus

                                                                       
Query: 114 gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 173
           |||||||| || |||||  ||||||| |||||| ||| ||| ||||  |||||||| |||
Sbjct: 583 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 642

                                                                       
Query: 174 tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 233
           || ||| ||||||||| ||||||||| ||||||||||||   ||| ||||||||||||||
Sbjct: 643 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 702

            
Query: 234 c 234
           |
Sbjct: 703 c 703



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Plus

                                                                            
Query: 114      gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 173
                |||||||| || |||||  ||||||| |||||| ||| ||| ||||  |||||||| |||
Sbjct: 23668389 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 23668448

                                                                            
Query: 174      tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 233
                || ||| ||||||||| ||||||||| ||||||||||||   ||| ||||||||||||||
Sbjct: 23668449 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 23668508

                 
Query: 234      c 234
                |
Sbjct: 23668509 c 23668509



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                            
Query: 189      gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
                |||||||| |||||||| ||||||   ||||||||||| ||||||||||| |||||||| 
Sbjct: 23784272 gactgctgtcggtggaacggcgtcgggtgcagcaacaggaccggccatgtcgtcaagctc 23784331

                        
Query: 249      gacctccg 256
                ||||||||
Sbjct: 23784332 gacctccg 23784339



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 171      tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 229
                ||||| ||| |||||||||||||||||| ||||||||| |||   ||||||||||||||
Sbjct: 23631324 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 23631266



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 459      ccaccgcagctgggtaatctctccaacttacggtactt 496
                ||||||||||||||||||||||||||||| || |||||
Sbjct: 23638490 ccaccgcagctgggtaatctctccaacttgcgctactt 23638453



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                 
Query: 385      taccggagttcatgggttctctccatcagctgagatatctcgacctatc 433
                ||||||||||| |||||||||||||  | ||||||| ||||||||||||
Sbjct: 23638564 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 23638516



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 444      ttcattggaaggataccaccgcagctgggtaatctctccaac 485
                ||||| || |||||||||||| |||| |||||||||||||||
Sbjct: 23663502 ttcatcgggaggataccaccgtagctcggtaatctctccaac 23663461



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 156      cctggcaacctcctttcgtcttggaagggtgacga 190
                ||||| |||||||||||||| ||| ||||||||||
Sbjct: 23638799 cctggaaacctcctttcgtcatgggagggtgacga 23638765



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      gactgctgccggtggaaggg 208
                ||||||||||||||||||||
Sbjct: 23647293 gactgctgccggtggaaggg 23647274



to top

>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1085F01
          Length = 163671

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Plus

                                                                         
Query: 114   gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 173
             |||||||| || |||||  ||||||| |||||| ||| ||| ||||  |||||||| |||
Sbjct: 46093 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 46152

                                                                         
Query: 174   tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 233
             || ||| ||||||||| ||||||||| ||||||||||||   ||| ||||||||||||||
Sbjct: 46153 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 46212

              
Query: 234   c 234
             |
Sbjct: 46213 c 46213



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                          
Query: 189    gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
              |||||||| |||||||| ||||||   ||||||||||| ||||||||||| |||||||| 
Sbjct: 161976 gactgctgtcggtggaacggcgtcgggtgcagcaacaggaccggccatgtcgtcaagctc 162035

                      
Query: 249    gacctccg 256
              ||||||||
Sbjct: 162036 gacctccg 162043



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 171  tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 229
            ||||| ||| |||||||||||||||||| ||||||||| |||   ||||||||||||||
Sbjct: 9028 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 8970



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 459   ccaccgcagctgggtaatctctccaacttacggtactt 496
             ||||||||||||||||||||||||||||| || |||||
Sbjct: 16194 ccaccgcagctgggtaatctctccaacttgcgctactt 16157



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                              
Query: 385   taccggagttcatgggttctctccatcagctgagatatctcgacctatc 433
             ||||||||||| |||||||||||||  | ||||||| ||||||||||||
Sbjct: 16268 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 16220



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 444   ttcattggaaggataccaccgcagctgggtaatctctccaac 485
             ||||| || |||||||||||| |||| |||||||||||||||
Sbjct: 41206 ttcatcgggaggataccaccgtagctcggtaatctctccaac 41165



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 156   cctggcaacctcctttcgtcttggaagggtgacga 190
             ||||| |||||||||||||| ||| ||||||||||
Sbjct: 16503 cctggaaacctcctttcgtcatgggagggtgacga 16469



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   gactgctgccggtggaaggg 208
             ||||||||||||||||||||
Sbjct: 24997 gactgctgccggtggaaggg 24978



to top

>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518F01
          Length = 154541

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Plus

                                                                          
Query: 114    gagaggtctgcccttctttccttcagggcaggtctatcagatcctggcaacctcctttcg 173
              |||||||| || |||||  ||||||| |||||| ||| ||| ||||  |||||||| |||
Sbjct: 131088 gagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcg 131147

                                                                          
Query: 174    tcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaaccggc 233
              || ||| ||||||||| ||||||||| ||||||||||||   ||| ||||||||||||||
Sbjct: 131148 tcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggc 131207

               
Query: 234    c 234
              |
Sbjct: 131208 c 131208



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 171   tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 229
             ||||| ||| |||||||||||||||||| ||||||||| |||   ||||||||||||||
Sbjct: 94023 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 93965



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 459    ccaccgcagctgggtaatctctccaacttacggtactt 496
              ||||||||||||||||||||||||||||| || |||||
Sbjct: 101189 ccaccgcagctgggtaatctctccaacttgcgctactt 101152



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                               
Query: 385    taccggagttcatgggttctctccatcagctgagatatctcgacctatc 433
              ||||||||||| |||||||||||||  | ||||||| ||||||||||||
Sbjct: 101263 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 101215



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                        
Query: 444    ttcattggaaggataccaccgcagctgggtaatctctccaac 485
              ||||| || |||||||||||| |||| |||||||||||||||
Sbjct: 126201 ttcatcgggaggataccaccgtagctcggtaatctctccaac 126160



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 156    cctggcaacctcctttcgtcttggaagggtgacga 190
              ||||| |||||||||||||| ||| ||||||||||
Sbjct: 101498 cctggaaacctcctttcgtcatgggagggtgacga 101464



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    gactgctgccggtggaaggg 208
              ||||||||||||||||||||
Sbjct: 109992 gactgctgccggtggaaggg 109973



to top

>ref|NM_192667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1788

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                       
Query: 189 gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
           |||||||| |||||||| ||||||   ||||||||||| ||||||||||| |||||||| 
Sbjct: 202 gactgctgtcggtggaacggcgtcgggtgcagcaacaggaccggccatgtcgtcaagctc 261

                   
Query: 249 gacctccg 256
           ||||||||
Sbjct: 262 gacctccg 269



to top

>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0681B11
          Length = 144091

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 189   gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
             |||||||| |||||||| ||||||   ||||||||||| ||||||||||| |||||||| 
Sbjct: 64857 gactgctgtcggtggaacggcgtcgggtgcagcaacaggaccggccatgtcgtcaagctc 64916

                     
Query: 249   gacctccg 256
             ||||||||
Sbjct: 64917 gacctccg 64924



to top

>ref|NM_192641.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3291

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 171 tcgtcttggaagggtgacgactgctgccggtggaagggcgtctactgcagcaacagaac 229
           ||||| ||| |||||||||||||||||| ||||||||| |||   ||||||||||||||
Sbjct: 163 tcgtcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 221



to top

>ref|NM_192643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2862

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 459 ccaccgcagctgggtaatctctccaacttacggtactt 496
           ||||||||||||||||||||||||||||| || |||||
Sbjct: 469 ccaccgcagctgggtaatctctccaacttgcgctactt 506



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 385 taccggagttcatgggttctctccatcagctgagatatctcgacctatc 433
           ||||||||||| |||||||||||||  | ||||||| ||||||||||||
Sbjct: 395 taccggagttcttgggttctctccacaacctgagatctctcgacctatc 443



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 156 cctggcaacctcctttcgtcttggaagggtgacga 190
           ||||| |||||||||||||| ||| ||||||||||
Sbjct: 160 cctggaaacctcctttcgtcatgggagggtgacga 194



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 216      tgcagcaacagaaccggccatgttgtcaagct 247
                |||||||||||||||||||||||  |||||||
Sbjct: 10060375 tgcagcaacagaaccggccatgtcatcaagct 10060344



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 216      tgcagcaacagaaccggccatgttgtcaagct 247
                |||||||||||||||||||||||  |||||||
Sbjct: 10060260 tgcagcaacagaaccggccatgtcatcaagct 10060229



to top

>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 216    tgcagcaacagaaccggccatgttgtcaagct 247
              |||||||||||||||||||||||  |||||||
Sbjct: 102246 tgcagcaacagaaccggccatgtcatcaagct 102277



to top

>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                          
Query: 192    tgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagcttgac 251
              |||||||||||||  ||||||   ||||||||| |||| ||||||||  |||||||| ||
Sbjct: 109365 tgctgccggtggagaggcgtcagttgcagcaaccgaacaggccatgtcatcaagcttcac 109424

                
Query: 252    ct 253
              ||
Sbjct: 109425 ct 109426



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                          
Query: 189    gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
              ||||||||||||||||  ||||||  |||| |||||  ||| ||||||||  ||||||||
Sbjct: 196777 gactgctgccggtggagaggcgtcagctgctgcaaccaaacaggccatgtcatcaagctt 196718

                   
Query: 249    gacct 253
               ||||
Sbjct: 196717 cacct 196713



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                          
Query: 189    gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
              ||||||||||||||||  || |||   ||||||||| |||| ||||||||  ||||||||
Sbjct: 190910 gactgctgccggtggagaggtgtcagttgcagcaaccgaacaggccatgtcatcaagctt 190851



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 189   gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
             ||||||||||||||||  || |||   ||||||||| |||| ||||||||  ||||||||
Sbjct: 37806 gactgctgccggtggagaggagtcagttgcagcaaccgaacaggccatgtcatcaagctt 37865



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 189   gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
             ||||||||||||||||  |||||   |||||||||| |||| ||||| ||  ||||||||
Sbjct: 23952 gactgctgccggtggagaggcgtaagctgcagcaaccgaacaggccacgtcatcaagctt 24011



to top

>gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018K14,
              complete sequence
          Length = 152725

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 216    tgcagcaacagaaccggccatgttgtcaagctt 248
              ||||||||||| |||||||||||  ||||||||
Sbjct: 121988 tgcagcaacaggaccggccatgtcatcaagctt 122020



to top

>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0542B04, complete sequence
          Length = 182823

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 216   tgcagcaacagaaccggccatgttgtcaagctt 248
             ||||||||||| |||||||||||  ||||||||
Sbjct: 22032 tgcagcaacaggaccggccatgtcatcaagctt 22064



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 216      tgcagcaacagaaccggccatgttgtcaagctt 248
                ||||||||||| |||||||||||  ||||||||
Sbjct: 20202830 tgcagcaacaggaccggccatgtcatcaagctt 20202862



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 216      tgcagcaacagaaccggccatgttgtcaagct 247
                ||||||||| | ||||||||||| ||||||||
Sbjct: 19940775 tgcagcaaccgcaccggccatgtcgtcaagct 19940806



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                            
Query: 189      gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
                |||| |||||||||||  ||||||   |||||||||   ||||||||||| |||||||||
Sbjct: 19936544 gacttctgccggtggagaggcgtccggtgcagcaacctcaccggccatgtcgtcaagctt 19936603



to top

>gb|AC114291.2| Homo sapiens chromosome 5 clone CTD-3080P12, complete sequence
          Length = 202305

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   aagctcctccttgcttggttt 331
             |||||||||||||||||||||
Sbjct: 67724 aagctcctccttgcttggttt 67744



to top

>dbj|AK120272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047P10, full
            insert sequence
          Length = 6557

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 216  tgcagcaacagaaccggccatgttgtcaagctt 248
            ||||||||||| |||||||||||  ||||||||
Sbjct: 6043 tgcagcaacaggaccggccatgtcatcaagctt 6011



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 216      tgcagcaacagaaccggccatgttgtcaagctt 248
                ||||||||||| |||||||||||  ||||||||
Sbjct: 20487759 tgcagcaacaggaccggccatgtcatcaagctt 20487791



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 216      tgcagcaacagaaccggccatgttgtcaagct 247
                ||||||||| | ||||||||||| ||||||||
Sbjct: 20225754 tgcagcaaccgcaccggccatgtcgtcaagct 20225785



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                            
Query: 189      gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
                |||| |||||||||||  ||||||   |||||||||   ||||||||||| |||||||||
Sbjct: 20221523 gacttctgccggtggagaggcgtccggtgcagcaacctcaccggccatgtcgtcaagctt 20221582



to top

>ref|XM_474112.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 186 gacgactgctgccggtggaagggcgtctactgcagcaaca 225
           ||||||||||||  |||| || ||||| ||||||||||||
Sbjct: 181 gacgactgctgcttgtgggagcgcgtcaactgcagcaaca 220



to top

>ref|NM_192644.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2589

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 gactgctgccggtggaaggg 208
           ||||||||||||||||||||
Sbjct: 559 gactgctgccggtggaaggg 578



to top

>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 216    tgcagcaacagaaccggccatgttgtcaagct 247
              ||||||||| | ||||||||||| ||||||||
Sbjct: 117842 tgcagcaaccgcaccggccatgtcgtcaagct 117873



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                          
Query: 189    gactgctgccggtggaagggcgtctactgcagcaacagaaccggccatgttgtcaagctt 248
              |||| |||||||||||  ||||||   |||||||||   ||||||||||| |||||||||
Sbjct: 113611 gacttctgccggtggagaggcgtccggtgcagcaacctcaccggccatgtcgtcaagctt 113670



to top

>gb|AC114998.13| Mus musculus chromosome 8, clone RP23-476P11, complete sequence
          Length = 222621

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  ggaagtcatggtgagaaaat 289
            ||||||||||||||||||||
Sbjct: 7003 ggaagtcatggtgagaaaat 6984



to top

>gb|AC108820.13| Mus musculus chromosome 8, clone RP23-10I8, complete sequence
          Length = 227289

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ggaagtcatggtgagaaaat 289
             ||||||||||||||||||||
Sbjct: 22380 ggaagtcatggtgagaaaat 22399



to top

>emb|AL359258.23| Human DNA sequence from clone RP11-483I13 on chromosome 1 Contains the
             5' end of the SLC25A24 gene for solute carrier family 25
             (mitochondrial carrier; phosphate carrier) member 24, the
             gene for a novel protein, two novel genes, a pseudogene
             similar to solute carrier family 25 (mitochondrial
             carrier; phosphate carrier) member 24 (SLC25A24) and two
             CpG islands, complete sequence
          Length = 188622

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   catgttgtcaagcttgacct 253
             ||||||||||||||||||||
Sbjct: 25552 catgttgtcaagcttgacct 25533



to top

>gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, complete sequence
          Length = 179385

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   gttctctccatcagctgaga 419
             ||||||||||||||||||||
Sbjct: 97185 gttctctccatcagctgaga 97204



to top

>gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-24b4, complete
           sequence
          Length = 110753

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 309 ataagctcctcc-ttgcttggtttacaacatc 339
           |||||||||||| ||||||||||||| |||||
Sbjct: 141 ataagctcctccattgcttggtttactacatc 172



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 186      gacgactgctgccggtggaagggcgtctactgcagcaaca 225
                ||||||||||||  |||| || ||||| ||||||||||||
Sbjct: 33008920 gacgactgctgcttgtgggagcgcgtcaactgcagcaaca 33008959



to top

>gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, complete sequence
          Length = 177950

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  tcagatcctggcaacctcct 169
            ||||||||||||||||||||
Sbjct: 2015 tcagatcctggcaacctcct 1996



to top

>gb|AC007677.3| Homo sapiens BAC clone RP11-86N1 from 2, complete sequence
          Length = 166949

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   gtgagaaaatggaggtgcta 299
             ||||||||||||||||||||
Sbjct: 79719 gtgagaaaatggaggtgcta 79700



to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     aggccctgaagaaggaagtc 276
               ||||||||||||||||||||
Sbjct: 4755948 aggccctgaagaaggaagtc 4755967



to top

>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 216 tgcagcaacagaaccggccatgttgtcaagct 247
           ||||||||| | ||||||||||| ||||||||
Sbjct: 328 tgcagcaaccgcaccggccatgtcgtcaagct 359



to top

>dbj|AK072103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120K23, full
           insert sequence
          Length = 3072

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 gactgctgccggtggaaggg 208
           ||||||||||||||||||||
Sbjct: 319 gactgctgccggtggaaggg 338



to top

>gb|AC154661.2| Mus musculus BAC clone RP24-274N1 from 12, complete sequence
          Length = 159667

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    actgttcattggaaggatac 459
              ||||||||||||||||||||
Sbjct: 104235 actgttcattggaaggatac 104254



to top

>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete
              sequence
          Length = 123337

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 186    gacgactgctgccggtggaagggcgtctactgcagcaaca 225
              ||||||||||||  |||| || ||||| ||||||||||||
Sbjct: 121044 gacgactgctgcttgtgggagcgcgtcaactgcagcaaca 121083



to top

>emb|AL732337.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0821G03, complete
             sequence
          Length = 75285

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 186   gacgactgctgccggtggaagggcgtctactgcagcaaca 225
             ||||||||||||  |||| || ||||| ||||||||||||
Sbjct: 42520 gacgactgctgcttgtgggagcgcgtcaactgcagcaaca 42559



to top

>emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21,
             complete sequence
          Length = 140626

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 186   gacgactgctgccggtggaagggcgtctactgcagcaaca 225
             ||||||||||||  |||| || ||||| ||||||||||||
Sbjct: 18501 gacgactgctgcttgtgggagcgcgtcaactgcagcaaca 18540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,477,889
Number of Sequences: 3902068
Number of extensions: 4477889
Number of successful extensions: 78547
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 78157
Number of HSP's gapped (non-prelim): 391
length of query: 588
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 565
effective length of database: 17,143,297,704
effective search space: 9685963202760
effective search space used: 9685963202760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top