ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baalg23 |
|---|---|
| Clone Library Name | barley_pub |
>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3| Length = 760 Score = 44.3 bits (103), Expect = 2e-04 Identities = 18/52 (34%), Positives = 36/52 (69%) Frame = +1 Query: 79 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMDPVDV 234 +KK++L+ D+ D++ A K ++ L G+D++ +DM ++K+TV G M+ +V Sbjct: 696 IKKMILQFDISHDKEIDNAFKRLASLPGVDSISIDMIEKKLTVGGDMNANEV 747
>R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein homolog R1B-12| Length = 1296 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = +1 Query: 79 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMDPVDV 234 +KK+VLK D ++++ KA + L GI ++ VD ++K V+G MD +V Sbjct: 1232 VKKMVLKFDTSNEKEISKAFDRLLSLPGIQSIAVDSNEKKFIVIGDMDADEV 1283
>R1B17_SOLDE (Q6L403) Putative late blight resistance protein homolog R1B-17| Length = 1312 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Frame = +1 Query: 79 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMDPVD---VVAKLR 249 +KK++ K+D+ ++ + + K ++ L GI ++ D +K+TV G MD + VV+KLR Sbjct: 1248 IKKMMWKVDVGVNKGRLETFKRLAPLPGIKSVAFDFNKKKLTVTGDMDANEVQLVVSKLR 1307 Query: 250 K 252 K Sbjct: 1308 K 1308
>R1B19_SOLDE (Q6L406) Putative late blight resistance protein homolog R1B-19| Length = 1582 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 79 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMD 222 ++K LKL+L D KA K + GI+++ D K++K+TV G +D Sbjct: 1358 IEKKTLKLNLSHDEDIPKAFKRLFLCPGIESVSTDRKEKKLTVTGDVD 1405
>PININ_BOVIN (P79122) Pinin| Length = 703 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 51 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 203 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>PININ_HUMAN (Q9H307) Pinin (140 kDa nuclear and cell adhesion-related| phosphoprotein) (Domain-rich serine protein) (DRS-protein) (DRSP) (Melanoma metastasis clone A protein) (Desmosome-associated protein) (SR-like protein) (Nuclear protein SDK3) Length = 717 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 51 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 203 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 51 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 203 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>PININ_PONPY (Q5R5X0) Pinin| Length = 719 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 51 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 203 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>VE2_CRPVK (P03121) Probable regulatory protein E2| Length = 390 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = +3 Query: 66 GRRRYEEGGAEAGPA--RRQA---EAEGAQGRLRPPRHRQYGR 179 GRRR G + PA R+QA EA+ A G +RPP GR Sbjct: 239 GRRRSRSPGVQRRPAKQRKQAAPDEADSAAGDIRPPAPEDVGR 281
>PININ_MOUSE (O35691) Pinin| Length = 725 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 51 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 203 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>SNUT1_RAT (Q5XIW8) U4/U6.U5 tri-snRNP-associated protein 1 (Squamous cell| carcinoma antigen recognized by T-cells 1) (SART-1) (rSART-1) Length = 806 Score = 30.4 bits (67), Expect = 2.9 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +3 Query: 69 RRRYEEGGAEAGPARRQAEAE---GAQGRLR 152 R+R E GAE G RR AEAE GA GR R Sbjct: 53 RKRSRERGAERGSGRRGAEAEARSGAHGRER 83
>H2B1_STRPU (P06145) Histone H2B.1, sperm| Length = 139 Score = 30.0 bits (66), Expect = 3.8 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +3 Query: 24 NPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYG 176 +P SP +RSP G + +G G ARR+ GA R R R YG Sbjct: 5 SPTKRSPTKRSPQKGAGKGGKGSKRGGKARRRG---GAAVRRRRRRRESYG 52
>SNUT1_MOUSE (Q9Z315) U4/U6.U5 tri-snRNP-associated protein 1 (Squamous cell| carcinoma antigen recognized by T-cells 1) (SART-1) (mSART-1) (Hypoxia-associated factor) Length = 806 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Frame = +3 Query: 69 RRRYEEGGAEAGPARRQAEAE---GAQGRLRPPRHRQYGRGHEGPEDD 203 R+R E G+E G RR AEAE GA GR R R DD Sbjct: 53 RKRSRERGSERGSGRRGAEAEARSGAHGRERSQAEPSERRVKREKRDD 100
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 29.3 bits (64), Expect = 6.5 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = +3 Query: 3 RTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYG 176 R+PS P+ SP RR R A + P RR + + +G+ PPRHR G Sbjct: 99 RSPS----PRQGSPARRVD-----RSSSPRARSPPPRRHSRSPPLRGQPPPPRHRDAG 147
>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 925 Score = 29.3 bits (64), Expect = 6.5 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 24 NPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYGRGHEGPED 200 +P SP +SP+ + E GAE G + + E E + + P+ + + E P+D Sbjct: 684 SPAAKSPAPKSPVEEVKPKAEAGAEKGEQKEKVEEEKKEAK-ESPKEEKAEKKEEKPKD 741
>IBP2_CHICK (P49705) Insulin-like growth factor-binding protein 2 precursor| (IGFBP-2) (IBP-2) (IGF-binding protein 2) Length = 311 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = +3 Query: 66 GRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYGRGHEGPEDD 203 G R Y + GAE P QA +G RPP +YG E P D+ Sbjct: 94 GLRCYPDPGAELPP---QALVQGQGTCARPPDTDEYGASTEPPADN 136
>SIR2_LEIMA (Q25337) NAD-dependent deacetylase SIR2 homolog (EC 3.5.1.-)| (LMSIR2RP) Length = 381 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = +3 Query: 36 SSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYGRGHEGPE 197 SS RSP RR EEGG E G + E E A + QYG + P+ Sbjct: 272 SSSQSRSPSASARR-EEGGTEDGSSSPNEEVEDASTSSSSDGYGQYGDYYAHPD 324
>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) (Verprolin homology domain-containing protein 3) Length = 502 Score = 28.9 bits (63), Expect = 8.5 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 2 THAVPPHQPTNFITLPAKPSVWPP 73 THA PPH P+ + + A P PP Sbjct: 378 THAAPPHPPSTGLLVTAPPPPGPP 401
>R1A10_SOLDE (Q60CZ8) Putative late blight resistance protein homolog R1A-10| Length = 1306 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%) Frame = +1 Query: 160 GIDNMGVDMKDQKMTVVGSMDPVD---VVAKLRK 252 GI+++ D K++K+TV G +D + VV KLRK Sbjct: 1267 GIESVSSDEKEKKLTVTGDVDADEVQLVVEKLRK 1300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,363,579 Number of Sequences: 219361 Number of extensions: 484129 Number of successful extensions: 1950 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1949 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
