ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalg20 |
|---|---|
| Clone Library Name | barley_pub |
>CBX6_HUMAN (O95503) Chromobox protein homolog 6| Length = 412 Score = 31.6 bits (70), Expect = 0.54 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Frame = +3 Query: 72 PS*AGLPCDGP*AGLLVRCPLGLYDKAS-----CPSYSPHGLSPWRVNPWGIHVKLHPQT 236 PS P GLL+ P YD S CPS +P P P KL P+T Sbjct: 245 PSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPP-----KLLPET 299 Query: 237 LSPS 248 +SPS Sbjct: 300 VSPS 303
>PCP_STAAR (Q6GDB4) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 31.2 bits (69), Expect = 0.70 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%) Frame = +1 Query: 79 EPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYPHGGLTH--GVSMLNFIL------- 231 + A H+ G PA + + P ++ Q I + G P G L++ G + N +L Sbjct: 99 DQAIHLDGA-PAYFSNLP----VKAMTQSIINQGLP-GALSNSAGTFVCNHVLYHLGYLQ 152 Query: 232 -KHYPPV*FGFIHVKLHPQK 288 KHYP + FGFIHV P++ Sbjct: 153 DKHYPHLRFGFIHVPYIPEQ 172
>PCP_STAAN (P65677) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 31.2 bits (69), Expect = 0.70 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%) Frame = +1 Query: 79 EPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYPHGGLTH--GVSMLNFIL------- 231 + A H+ G PA + + P ++ Q I + G P G L++ G + N +L Sbjct: 99 DQAIHLDGA-PAYFSNLP----VKAMTQSIINQGLP-GALSNSAGTYVCNHVLYHLGYLQ 152 Query: 232 -KHYPPV*FGFIHVKLHPQK 288 KHYP + FGFIHV P++ Sbjct: 153 DKHYPHLRFGFIHVPYIPEQ 172
>PCP_STAAM (P65676) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 31.2 bits (69), Expect = 0.70 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%) Frame = +1 Query: 79 EPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYPHGGLTH--GVSMLNFIL------- 231 + A H+ G PA + + P ++ Q I + G P G L++ G + N +L Sbjct: 99 DQAIHLDGA-PAYFSNLP----VKAMTQSIINQGLP-GALSNSAGTYVCNHVLYHLGYLQ 152 Query: 232 -KHYPPV*FGFIHVKLHPQK 288 KHYP + FGFIHV P++ Sbjct: 153 DKHYPHLRFGFIHVPYIPEQ 172
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 8/38 (21%) Frame = -2 Query: 139 RPKGHRTRRPAQGP--------SHGRPAHEGKCGDXXP 50 R KGH+ R GP SHGR H G+ GD P Sbjct: 563 RVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGP 600
>POLG_HCVSA (O91936) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = +3 Query: 90 PCD-GP*AGLLVRCPLGLYDKASCPSYSPHGLSPWRVNPWGIHVKLHPQTLSPSLIWIYP 266 PC+ GP ++CP + K +Y+ G PW +H P +W YP Sbjct: 568 PCNLGPTGNNSLKCPTDCFRKHPDATYTKCGSGPWLTPRCLVHY--------PYRLWHYP 619 Query: 267 C 269 C Sbjct: 620 C 620
>PCP_STAAW (Q8NUH2) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 29.6 bits (65), Expect = 2.0 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +1 Query: 79 EPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYPHGGLTH--GVSMLNFIL------- 231 + A H+ G PA + + P ++ Q I + G P G L++ G + N L Sbjct: 99 DQAIHLDGA-PAYFSNLP----VKAMTQSIINQGLP-GALSNSAGTFVCNHTLYHLGYLQ 152 Query: 232 -KHYPPV*FGFIHVKLHPQK 288 KHYP + FGFIHV P++ Sbjct: 153 DKHYPHLRFGFIHVPYIPEQ 172
>PCP_STAAS (Q6G5Y4) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 29.6 bits (65), Expect = 2.0 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +1 Query: 79 EPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYPHGGLTH--GVSMLNFIL------- 231 + A H+ G PA + + P ++ Q I + G P G L++ G + N L Sbjct: 99 DQAIHLDGA-PAYFSNLP----VKAMTQSIINQGLP-GALSNSAGTFVCNHTLYHLGYLQ 152 Query: 232 -KHYPPV*FGFIHVKLHPQK 288 KHYP + FGFIHV P++ Sbjct: 153 DKHYPHLRFGFIHVPYIPEQ 172
>PCP_STAAC (Q5HCK7) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 29.6 bits (65), Expect = 2.0 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +1 Query: 79 EPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYPHGGLTH--GVSMLNFIL------- 231 + A H+ G PA + + P ++ Q I + G P G L++ G + N L Sbjct: 99 DQAIHLDGA-PAYFSNLP----VKAMTQSIINQGLP-GALSNSAGTFVCNHTLYHLGYLQ 152 Query: 232 -KHYPPV*FGFIHVKLHPQK 288 KHYP + FGFIHV P++ Sbjct: 153 DKHYPHLRFGFIHVPYIPEQ 172
>POLG_HCVEV (O39928) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = +3 Query: 90 PCD-GP*AGLLVRCPLGLYDKASCPSYSPHGLSPWRVNPWGIHVKLHPQTLSPSLIWIYP 266 PC+ GP ++CP + K +Y+ G PW +H P +W YP Sbjct: 568 PCNLGPTGNNSLKCPTDCFRKHPDATYTRCGSGPWLTPRCLVHY--------PYRLWHYP 619 Query: 267 C 269 C Sbjct: 620 C 620
>PCP_STAAU (Q53596) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%) Frame = +1 Query: 145 IRPPAQVIAHTGYPHGGLTH--GVSMLNFIL--------KHYPPV*FGFIHVKLHPQK 288 ++ Q + + G P G L++ G + N +L KHYP + FGFIHV P++ Sbjct: 116 VKAMTQSVINQGLP-GALSNSAGTFVCNHVLYHLGYLQDKHYPHLRFGFIHVPYIPEQ 172
>GATA2_CHICK (P23824) GATA-binding factor 2 (GATA-2) (Transcription factor| NF-E1B) Length = 466 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 150 ASCPSYSPHGLSPWRVNPWGIHVKLHPQTL-SPSLIWIYPC*TSSS 284 +S + S H +PW VNP+ LHP +P I +YP ++SS Sbjct: 100 SSKAALSAHHHNPWTVNPF-TKTPLHPSAAGAPGAISVYPGSSTSS 144
>FASC_XENLA (Q91837) Fascin| Length = 483 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +3 Query: 135 GLYDKASC--PSYSPHGLSPWRVNPWGIHVKLHPQ 233 G D+ SC PS SP WG+H+ +HPQ Sbjct: 106 GSEDRISCFSPSVSP-------AEKWGVHLAMHPQ 133
>RNP4_AERPE (Q9YD20) Ribonuclease P protein component 4 (EC 3.1.26.5) (RNase P| component 4) Length = 103 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3 Query: 156 RRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVE 61 R PYRKGPRG AP A + +G G E Sbjct: 44 RYPYRKGPRGGAPISPPAAEYGSGGRDSGERE 75
>HXB1_HUMAN (P14653) Homeobox protein Hox-B1 (Hox-2I)| Length = 301 Score = 28.1 bits (61), Expect = 6.0 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Frame = +3 Query: 21 SYSTSYYLGRGXXSPHFPS*AGLPCDGP*AGLLV----RCPLGLYDKASCPSYSPHGLSP 188 SY++ G G SP F +G P P + L V P G A PSY P P Sbjct: 41 SYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYP 100
>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3009 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Frame = +3 Query: 84 GLPCD-GP*AGLLVRCPLGLYDKASCPSYSPHGLSPWRVNPWGIHVKLHPQTL--SPSLI 254 G PC+ G L + CP + K +Y+ G PW L P+ + P + Sbjct: 565 GPPCNIGGVGNLTLTCPTDCFRKHPEATYTKCGSGPW----------LTPRCIVDYPYRL 614 Query: 255 WIYPC 269 W YPC Sbjct: 615 WHYPC 619
>GLYA1_VIBVY (Q7MN19) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 416 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +1 Query: 88 CHVMGLEPASWCDAPWA--FTIRPPAQVIAHTGYPHGG-LTHGVSMLNFILKHYPPV*FG 258 C ++P S A A + P + HGG LTHG S +NF KHY + +G Sbjct: 88 CEYANVQPHSGSQANSAVYMALLNPGDTVLGMSLAHGGHLTHG-SPVNFSGKHYNVIPYG 146
>GLYA1_VIBVU (Q8DFC9) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 416 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +1 Query: 88 CHVMGLEPASWCDAPWA--FTIRPPAQVIAHTGYPHGG-LTHGVSMLNFILKHYPPV*FG 258 C ++P S A A + P + HGG LTHG S +NF KHY + +G Sbjct: 88 CEYANVQPHSGSQANSAVYMALLNPGDTVLGMSLAHGGHLTHG-SPVNFSGKHYNVIPYG 146
>GLYA1_VIBPA (Q87RR2) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 416 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +1 Query: 88 CHVMGLEPASWCDAPWA--FTIRPPAQVIAHTGYPHGG-LTHGVSMLNFILKHYPPV*FG 258 C ++P S A A + P + HGG LTHG S +NF KHY + +G Sbjct: 88 CEYANVQPHSGSQANSAVYMALLNPGDTVLGMSLAHGGHLTHG-SPVNFSGKHYNVIPYG 146
>GLYA1_VIBCH (Q9KTG1) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 416 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +1 Query: 88 CHVMGLEPASWCDAPWA--FTIRPPAQVIAHTGYPHGG-LTHGVSMLNFILKHYPPV*FG 258 C ++P S A A + P + HGG LTHG S +NF KHY + +G Sbjct: 88 CEYANVQPHSGSQANSAVYMALLNPGDTVLGMSLAHGGHLTHG-SPVNFSGKHYNVIPYG 146
>CAYP2_MOUSE (Q8BUG5) Calcyphosin-2 (Calcyphosine-2)| Length = 550 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +3 Query: 210 IHVKLHPQTLSPSLIWIYPC*TSSSKKK 293 +HV L+P P+L W+ PC +S+ + Sbjct: 27 VHVHLNPPRSEPALGWVLPCQRPNSQHR 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,055,112 Number of Sequences: 219361 Number of extensions: 1012567 Number of successful extensions: 2401 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2400 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
