>POLG_ENMGO (P12296) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D)] (Fragment)
          Length = 834

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 198 TSTAPTTKVIHE-GMLGTGRFPLGKFSGPGTATGICVAV 85
           T T PTT+V+HE   L  GR P    +GPGT+  I   V
Sbjct: 707 TPTKPTTQVLHEVSSLSEGRTPQVYSAGPGTSNQISFVV 745

>POLG_EMCV (P03304) Genome polyprotein [Contains: Coat protein VP4 (Rho); Coat|
           protein VP2 (Beta); Coat protein VP3 (Gamma); Coat
           protein VP1 (Alpha); Picornain 2A (EC 3.4.22.29) (Core
           protein P2A) (G); Core protein P2B (I); Core protein P2C
           (C); Core pro
          Length = 2290

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 198 TSTAPTTKVIHE-GMLGTGRFPLGKFSGPGTATGICVAV 85
           T T PTT+V+HE   L  GR P    +GPG +  I   V
Sbjct: 772 TPTKPTTQVLHEVSSLSEGRTPQVYSAGPGISNQISFVV 810

>POLG_EMCVB (P17593) Genome polyprotein [Contains: Coat protein VP4 (Rho); Coat|
           protein VP2 (Beta); Coat protein VP3 (Gamma); Coat
           protein VP1 (Alpha); Picornain 2A (EC 3.4.22.29) (Core
           protein P2A) (G); Core protein P2B (I); Core protein P2C
           (C); Core pr
          Length = 2292

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 198 TSTAPTTKVIHE-GMLGTGRFPLGKFSGPGTATGICVAV 85
           T T PTT+V+HE   L  GR P    +GPG    I   V
Sbjct: 774 TPTKPTTQVLHEVSSLSEGRTPQVYSAGPGITNQISFVV 812

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 71  NLPIRTATQIPVAVPGPENLPRGNLPVPNMPSWMTLVVGAVLVAI 205
           +LP+  A  +P+A+P P +LP   LP+    S +T+ + AV+ A+
Sbjct: 69  SLPLPLALPLPMALPLPMSLP---LPLTAASSAVTVSLAAVVAAV 110

>POLG_TBEVW (P14336) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3414

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 94   TNPRSCSRPRKFAERKSPCAQHAFMDDLGRWCRA 195
            + PR CSR    A+ KS  A  A+ D+  RW  A
Sbjct: 2901 SKPRMCSREEFIAKVKSNAALGAWSDEQNRWASA 2934

>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3414

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 94   TNPRSCSRPRKFAERKSPCAQHAFMDDLGRWCRA 195
            + PR CSR    A+ KS  A  A+ D+  RW  A
Sbjct: 2901 SKPRMCSREEFIAKVKSNAALGAWSDEQNRWASA 2934

>TREX2_HUMAN (Q9BQ50) Three prime repair exonuclease 2 (EC 3.1.11.2) (3'-5'|
           exonuclease TREX2)
          Length = 279

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 97  LCCCPDRQVMVGAPELHGKDSRAMSRC 17
           LC CP+R     A E+ G  S  ++RC
Sbjct: 105 LCMCPERPFTAKASEITGLSSEGLARC 131

>POLG_TBEVS (P07720) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3412

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 94   TNPRSCSRPRKFAERKSPCAQHAFMDDLGRWCRA 195
            + PR CSR    A+ KS  A  A+ D+  RW  A
Sbjct: 2899 SKPRMCSREEFIAKVKSNAALGAWSDEQNRWSSA 2932


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,083,044
Number of Sequences: 219361
Number of extensions: 1349081
Number of successful extensions: 3893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3892
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)