Clone Information

BLAST Search Result

Clone Name	baalg16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 3...	33	0.46
2	NEU2_SHEEP (P01181) Vasopressin-neurophysin 2-copeptin precursor...	32	1.0
3	NEU2_LOXAF (P81768) Neurophysin 2 (Neurophysin-II) (E-NP)	31	1.8
4	NEU2_HORSE (P01182) Neurophysin 2 (Fragment)	31	1.8
5	NEU1_HORSE (P01176) Oxytocin-neurophysin 1 precursor (OT-NPI) [C...	31	1.8
6	NEU2_RAT (P01186) Vasopressin-neurophysin 2-copeptin precursor (...	31	1.8
7	NEU2_PIG (P01183) Vasopressin-neurophysin 2-copeptin precursor (...	31	1.8
8	NEU2_BOVIN (P01180) Vasopressin-neurophysin 2-copeptin precursor...	31	1.8
9	NEU2_BALPH (P01184) Vasopressin-neurophysin 2 precursor [Contain...	31	1.8
10	NEU1_SHEEP (P13389) Oxytocin-neurophysin 1 precursor (OT-NPI) [C...	31	1.8
11	NEU1_BOVIN (P01175) Oxytocin-neurophysin 1 precursor (OT-NPI) [C...	31	1.8
12	BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein...	31	2.3
13	BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein...	31	2.3
14	BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein...	31	2.3
15	R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-6...	30	3.0
16	NEU2_MOUSE (P35455) Vasopressin-neurophysin 2-copeptin precursor...	30	5.1
17	GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)	30	5.1
18	NEU1_RAT (P01179) Oxytocin-neurophysin 1 precursor (OT-NPI) [Con...	30	5.1
19	NEU1_MOUSE (P35454) Oxytocin-neurophysin 1 precursor (OT-NPI) [C...	30	5.1
20	GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Co...	30	5.1
21	R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo...	29	6.7
22	R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo...	29	6.7
23	NEU1_PIG (P01177) Oxytocin-neurophysin 1 precursor (OT-NPI) [Con...	29	6.7
24	SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed w...	29	8.7
25	NEU2_CAVPO (P10769) Vasopressin-neurophysin 2-copeptin precursor...	29	8.7
26	ADRB3_HUMAN (P13945) Beta-3 adrenergic receptor (Beta-3 adrenoce...	29	8.7

>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)|
          Length = 646

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 19  QYQQQSPAAALRP-VCPSPSGASRPPQGEGTSRSRP 123
           Q Q + P+AAL+P  CP P G + P  G   S + P
Sbjct: 22  QNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTP 57

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>NEU2_SHEEP (P01181) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Arg-vasopressin; Neurophysin 2
           (Neurophysin-III); Copeptin] (Fragment)
          Length = 147

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 116 DLEVPSPCGGREAPLGLGQTGRRAAAGDCC 27
           ++ +PSPC   + P G G  GR AAAG CC
Sbjct: 59  EIYLPSPCQSGQKPCGSG--GRCAAAGICC 86

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>NEU2_LOXAF (P81768) Neurophysin 2 (Neurophysin-II) (E-NP)|
          Length = 92

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 50  LPSPCQSGQKPCGSG--GRCAAAGICC 74

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>NEU2_HORSE (P01182) Neurophysin 2 (Fragment)|
          Length = 92

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 47  LPSPCQSGQKPCGSG--GRCAAAGICC 71

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>NEU1_HORSE (P01176) Oxytocin-neurophysin 1 precursor (OT-NPI) [Contains:|
           Oxytocin (Ocytocin); Neurophysin 1] (Fragment)
          Length = 105

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 62  LPSPCQSGQKPCGSG--GRCAAAGICC 86

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>NEU2_RAT (P01186) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Arg-vasopressin; Neurophysin 2
           (Neurophysin-I); Copeptin]
          Length = 168

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 85  LPSPCQSGQKPCGSG--GRCAAAGICC 109

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>NEU2_PIG (P01183) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Lys-vasopressin; Neurophysin 2
           (Neurophysin-I/-III); Copeptin]
          Length = 166

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 81  LPSPCQSGQKPCGSG--GRCAAAGICC 105

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>NEU2_BOVIN (P01180) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Arg-vasopressin; Neurophysin 2
           (Neurophysin-II); Copeptin]
          Length = 166

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 81  LPSPCQSGQKPCGSG--GRCAAAGICC 105

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>NEU2_BALPH (P01184) Vasopressin-neurophysin 2 precursor [Contains:|
           Arg-vasopressin; Neurophysin 2] (Fragment)
          Length = 107

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 62  LPSPCQSGQKPCGSG--GRCAAAGICC 86

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>NEU1_SHEEP (P13389) Oxytocin-neurophysin 1 precursor (OT-NPI) [Contains:|
           Oxytocin (Ocytocin); Neurophysin 1]
          Length = 125

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 81  LPSPCQSGQKPCGSG--GRCAAAGICC 105

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>NEU1_BOVIN (P01175) Oxytocin-neurophysin 1 precursor (OT-NPI) [Contains:|
           Oxytocin (Ocytocin); Neurophysin 1]
          Length = 125

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AAAG CC
Sbjct: 81  LPSPCQSGQKPCGSG--GRCAAAGICC 105

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>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 473  VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 303
            +V  +++RG G +E  Q ++      G    GC  + +      GL  QS++L   +RD 
Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399

Query: 302  ---ELLRLGQQ 279
                L++L Q+
Sbjct: 1400 MQDNLIKLQQE 1410

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>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger|
            protein 53)
          Length = 1863

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 473  VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 303
            +V  +++RG G +E  Q ++      G    GC  + +      GL  QS++L   +RD 
Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399

Query: 302  ---ELLRLGQQ 279
                L++L Q+
Sbjct: 1400 MQHNLIKLQQE 1410

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>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 473  VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 303
            +V  +++RG G +E  Q ++      G    GC  + +      GL  QS++L   +RD 
Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399

Query: 302  ---ELLRLGQQ 279
                L++L Q+
Sbjct: 1400 MQDNLIKLQQE 1410

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>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor|
           homolog 1) (Nogo-66 receptor-related protein 2) (NgR2)
           (Nogo receptor-like 3)
          Length = 420

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 491 RYEQGGVVRHEDDR--GYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGLGEQSELL 324
           R  QGG    EDD   GYGG++QR  Q C        C         VL  G ++ LL
Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTCP----GAACQAPADSRGPVLSAGLRTPLL 410

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>NEU2_MOUSE (P35455) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Arg-vasopressin; Neurophysin 2
           (Neurophysin-I); Copeptin]
          Length = 168

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AA G CC
Sbjct: 85  LPSPCQSGQKPCGSG--GRCAAVGICC 109

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>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)|
          Length = 203

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 28  QQSPAAALRPVCPSPSGASRPPQGE 102
           Q+   AA  PV P P GA RPP+G+
Sbjct: 6   QEPDRAASDPVEPVPEGAGRPPRGD 30

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>NEU1_RAT (P01179) Oxytocin-neurophysin 1 precursor (OT-NPI) [Contains:|
           Oxytocin (Ocytocin); Neurophysin 1]
          Length = 125

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR A AG CC
Sbjct: 81  LPSPCQSGQKPCGSG--GRCATAGICC 105

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>NEU1_MOUSE (P35454) Oxytocin-neurophysin 1 precursor (OT-NPI) [Contains:|
           Oxytocin (Ocytocin); Neurophysin 1]
          Length = 125

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AA G CC
Sbjct: 81  LPSPCQSGQKPCGSG--GRCAATGICC 105

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>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:|
           Acrogranin; Granulin-1; Granulin-2; Granulin-3;
           Granulin-4; Granulin-5; Granulin-6; Granulin-7]
           (Fragment)
          Length = 591

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 4   GXKWLQYQQQSPAAALRPVCPSPSGASRPPQGEGTSRS 117
           G   + + Q++PA   RP  PSP G   PP   G  RS
Sbjct: 337 GLLQVPWAQKTPAQPSRPSQPSPPGPPGPPSPPGPLRS 374

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>R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor|
           homolog 1) (Nogo-66 receptor-related protein 2) (NgR2)
           (Nogo receptor-like 3)
          Length = 420

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 491 RYEQGGVVRHEDDR--GYGGDEQRQRQRC 411
           R  QGG    EDD   GYGG++QR  Q C
Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTC 385

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>R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor|
           homolog 1) (Nogo-66 receptor-related protein 2) (NgR2)
           (Nogo receptor-like 3)
          Length = 420

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 491 RYEQGGVVRHEDDR--GYGGDEQRQRQRC 411
           R  QGG    EDD   GYGG++QR  Q C
Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQMC 385

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>NEU1_PIG (P01177) Oxytocin-neurophysin 1 precursor (OT-NPI) [Contains:|
           Oxytocin (Ocytocin); Neurophysin 1]
          Length = 125

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G    GR AAAG CC
Sbjct: 81  LPSPCQSGQKPCG--SEGRCAAAGICC 105

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>SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed with cdc5|
           protein 5) (Cell cycle control protein cwf5)
          Length = 354

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 72  QRGLPSSARRRHFKVTAMAPKNKVNKYDDGWSKQ-WFGAGIFAEGSEEASV---DVFKKL 239
           Q GLP + R    K+    P N +N+     ++Q     G  A  S+EAS    ++ KK+
Sbjct: 88  QFGLPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGETAYDSQEASAAARNLVKKV 147

Query: 240 EKRKVLSTVEKAGL 281
           EKR++ S   K  L
Sbjct: 148 EKRELHSRPPKRKL 161

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>NEU2_CAVPO (P10769) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Arg-vasopressin; Neurophysin 2
           (Neurophysin-II); Copeptin]
          Length = 144

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 VPSPCGGREAPLGLGQTGRRAAAGDCC 27
           +PSPC   + P G G  GR AA G CC
Sbjct: 62  LPSPCQSGQKPCGSG--GRCAANGVCC 86

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>ADRB3_HUMAN (P13945) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 408

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 28  QQSPAAALRPVCPSPSGASRPPQGEGTSRSRP 123
           ++SP A  R + P+P G   PP+G      RP
Sbjct: 248 EESPPAPSRSLAPAPVGTCAPPEGVPACGRRP 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,188,273
Number of Sequences: 219361
Number of extensions: 934521
Number of successful extensions: 3274
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result