Clone Name | baalg16 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107731.1| Zea mays PCO069957 mRNA sequence Length = 925 Score = 357 bits (180), Expect = 2e-95 Identities = 397/467 (85%), Gaps = 3/467 (0%) Strand = Plus / Plus Query: 10 aaatggctgcaatatcagcagcaatctccggctgctgctcttcgtcctgtctgccccagt 69 |||||||||||||| | ||||| ||| | ||||||||||||||||| | ||||| ||| Sbjct: 92 aaatggctgcaatacctgcagcgatcccgggctgctgctcttcgtctcgcctgcctcag- 150 Query: 70 cccagcggggcctcccgtcctccgcaaggagaaggcacttcaaggtcacggccatggctc 129 | || || |||||| ||||| |||| ||||||| ||||||||||||||||||||| | Sbjct: 151 -cttgctgg-cctccctgcctccacaagcagaaggcgcttcaaggtcacggccatggcgc 208 Query: 130 ccaagaacaaggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcgggga 189 |||| || ||||||||| |||||||| | ||||| |||||||||||||||||||| | Sbjct: 209 ccaaaaagaaggtgaaccgctacgacgagagctggtcgaagcagtggttcggcgcgggca 268 Query: 190 tcttcgcggaggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgca 249 ||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||| Sbjct: 269 tcttcgcggagggcagcgaggaggtgtccgtggacgtgttcaagaagctggagcggcgca 328 Query: 250 aggtgctgagcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtca 309 |||||||||||||||| |||||||| || |||||||||||||| |||||||| ||| | | Sbjct: 329 aggtgctgagcaccgtggagaaggccggcctgctgtccaaggccgaggagctgggcctga 388 Query: 310 cgctctcctcgctggagaagctcggactgctctccaaggccgaggacctgggactcctca 369 |||||||||||||||||||||| || |||||||||||||||||||||||||| || |||| Sbjct: 389 cgctctcctcgctggagaagctgggcctgctctccaaggccgaggacctgggcctgctca 448 Query: 370 gcctcgtcgagagcgcagccacagtgtccccggccgtgctcgcatcgctgtcgctgccgc 429 |||||||||||| ||| || ||||||| |||| ||||| || | |||||||||| Sbjct: 449 gcctcgtcgagaccgcggcggggacgtccccgtccgtcctcgcctccatctcgctgccgc 508 Query: 430 tgctcgtcgcctccatagccacggtcgtcttcgtgccggacgactcc 476 | ||||| ||| || | ||| |||| ||| ||||||| ||||||||| Sbjct: 509 tcctcgtggccgccgtcgccgcggtggtcgtcgtgcccgacgactcc 555
>ref|NM_192526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 564 Score = 353 bits (178), Expect = 4e-94 Identities = 250/274 (91%) Strand = Plus / Plus Query: 107 cttcaaggtcacggccatggctcccaagaacaaggtgaacaagtacgacgatgggtggtc 166 ||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| Sbjct: 87 cttcaaggtcacggccatggctccccagaagaaggtgaacaggtacgacgagaagtggtc 146 Query: 167 caagcagtggttcggcgcggggatcttcgcggaggggagcgaggaggcgtcggtggacgt 226 |||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||| Sbjct: 147 gaagcagtggttcggggcggggatattcgcggaggggagcgaggaggtggaggtggacgt 206 Query: 227 gttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaaggcagggctgctgtc 286 ||||||||||||||||| ||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 207 gttcaagaagctggagaggcggaaggtgctgagcacggtggagaaggccgggctgctgtc 266 Query: 287 caaggcggaggagctcggcgtcacgctctcctcgctggagaagctcggactgctctccaa 346 || ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| Sbjct: 267 cagggcggaggagctcggcgtcacgctctcctcgctcgaggagctcggcctcctctccaa 326 Query: 347 ggccgaggacctgggactcctcagcctcgtcgag 380 |||||||||||| || |||||||||||||||||| Sbjct: 327 ggccgaggacctcggcctcctcagcctcgtcgag 360 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 agcagcaatctccggctgctgctcttcgtc 55 ||||||||||||| ||||||||||||||| Sbjct: 15 agcagcaatctccacctgctgctcttcgtc 44
>dbj|AK099180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103B06, full insert sequence Length = 686 Score = 353 bits (178), Expect = 4e-94 Identities = 250/274 (91%) Strand = Plus / Plus Query: 107 cttcaaggtcacggccatggctcccaagaacaaggtgaacaagtacgacgatgggtggtc 166 ||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| Sbjct: 125 cttcaaggtcacggccatggctccccagaagaaggtgaacaggtacgacgagaagtggtc 184 Query: 167 caagcagtggttcggcgcggggatcttcgcggaggggagcgaggaggcgtcggtggacgt 226 |||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||| Sbjct: 185 gaagcagtggttcggggcggggatattcgcggaggggagcgaggaggtggaggtggacgt 244 Query: 227 gttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaaggcagggctgctgtc 286 ||||||||||||||||| ||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 245 gttcaagaagctggagaggcggaaggtgctgagcacggtggagaaggccgggctgctgtc 304 Query: 287 caaggcggaggagctcggcgtcacgctctcctcgctggagaagctcggactgctctccaa 346 || ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| Sbjct: 305 cagggcggaggagctcggcgtcacgctctcctcgctcgaggagctcggcctcctctccaa 364 Query: 347 ggccgaggacctgggactcctcagcctcgtcgag 380 |||||||||||| || |||||||||||||||||| Sbjct: 365 ggccgaggacctcggcctcctcagcctcgtcgag 398 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 agcagcaatctccggctgctgctcttcgtc 55 ||||||||||||| ||||||||||||||| Sbjct: 53 agcagcaatctccacctgctgctcttcgtc 82
>dbj|AK071353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094M23, full insert sequence Length = 754 Score = 353 bits (178), Expect = 4e-94 Identities = 250/274 (91%) Strand = Plus / Plus Query: 107 cttcaaggtcacggccatggctcccaagaacaaggtgaacaagtacgacgatgggtggtc 166 ||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| Sbjct: 141 cttcaaggtcacggccatggctccccagaagaaggtgaacaggtacgacgagaagtggtc 200 Query: 167 caagcagtggttcggcgcggggatcttcgcggaggggagcgaggaggcgtcggtggacgt 226 |||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||| Sbjct: 201 gaagcagtggttcggggcggggatattcgcggaggggagcgaggaggtggaggtggacgt 260 Query: 227 gttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaaggcagggctgctgtc 286 ||||||||||||||||| ||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 261 gttcaagaagctggagaggcggaaggtgctgagcacggtggagaaggccgggctgctgtc 320 Query: 287 caaggcggaggagctcggcgtcacgctctcctcgctggagaagctcggactgctctccaa 346 || ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| Sbjct: 321 cagggcggaggagctcggcgtcacgctctcctcgctcgaggagctcggcctcctctccaa 380 Query: 347 ggccgaggacctgggactcctcagcctcgtcgag 380 |||||||||||| || |||||||||||||||||| Sbjct: 381 ggccgaggacctcggcctcctcagcctcgtcgag 414 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 agcagcaatctccggctgctgctcttcgtc 55 ||||||||||||| ||||||||||||||| Sbjct: 69 agcagcaatctccacctgctgctcttcgtc 98
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 305 bits (154), Expect = 8e-80 Identities = 220/242 (90%) Strand = Plus / Minus Query: 139 aggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggggatcttcgcgg 198 ||||||||| ||||||||| |||||| |||||||||||||| |||||||| ||||||| Sbjct: 22751239 aggtgaacaggtacgacgagaagtggtcgaagcagtggttcggggcggggatattcgcgg 22751180 Query: 199 aggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgcaaggtgctga 258 ||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||| Sbjct: 22751179 aggggagcgaggaggtggaggtggacgtgttcaagaagctggagaggcggaaggtgctga 22751120 Query: 259 gcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtcacgctctcct 318 |||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 22751119 gcacggtggagaaggccgggctgctgtccagggcggaggagctcggcgtcacgctctcct 22751060 Query: 319 cgctggagaagctcggactgctctccaaggccgaggacctgggactcctcagcctcgtcg 378 |||| ||| ||||||| || |||||||||||||||||||| || |||||||||||||||| Sbjct: 22751059 cgctcgaggagctcggcctcctctccaaggccgaggacctcggcctcctcagcctcgtcg 22751000 Query: 379 ag 380 || Sbjct: 22750999 ag 22750998 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 107 cttcaaggtcacggccatggctcccaagaacaaggt 142 ||||||||||||||||||||||||| |||| ||||| Sbjct: 22751370 cttcaaggtcacggccatggctccccagaagaaggt 22751335 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 26 agcagcaatctccggctgctgctcttcgtc 55 ||||||||||||| ||||||||||||||| Sbjct: 22751442 agcagcaatctccacctgctgctcttcgtc 22751413
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 305 bits (154), Expect = 8e-80 Identities = 220/242 (90%) Strand = Plus / Minus Query: 139 aggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggggatcttcgcgg 198 ||||||||| ||||||||| |||||| |||||||||||||| |||||||| ||||||| Sbjct: 127951 aggtgaacaggtacgacgagaagtggtcgaagcagtggttcggggcggggatattcgcgg 127892 Query: 199 aggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgcaaggtgctga 258 ||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||| Sbjct: 127891 aggggagcgaggaggtggaggtggacgtgttcaagaagctggagaggcggaaggtgctga 127832 Query: 259 gcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtcacgctctcct 318 |||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 127831 gcacggtggagaaggccgggctgctgtccagggcggaggagctcggcgtcacgctctcct 127772 Query: 319 cgctggagaagctcggactgctctccaaggccgaggacctgggactcctcagcctcgtcg 378 |||| ||| ||||||| || |||||||||||||||||||| || |||||||||||||||| Sbjct: 127771 cgctcgaggagctcggcctcctctccaaggccgaggacctcggcctcctcagcctcgtcg 127712 Query: 379 ag 380 || Sbjct: 127711 ag 127710 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 107 cttcaaggtcacggccatggctcccaagaacaaggt 142 ||||||||||||||||||||||||| |||| ||||| Sbjct: 128082 cttcaaggtcacggccatggctccccagaagaaggt 128047 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 26 agcagcaatctccggctgctgctcttcgtc 55 ||||||||||||| ||||||||||||||| Sbjct: 128154 agcagcaatctccacctgctgctcttcgtc 128125
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 305 bits (154), Expect = 8e-80 Identities = 220/242 (90%) Strand = Plus / Minus Query: 139 aggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggggatcttcgcgg 198 ||||||||| ||||||||| |||||| |||||||||||||| |||||||| ||||||| Sbjct: 68628 aggtgaacaggtacgacgagaagtggtcgaagcagtggttcggggcggggatattcgcgg 68569 Query: 199 aggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgcaaggtgctga 258 ||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||| Sbjct: 68568 aggggagcgaggaggtggaggtggacgtgttcaagaagctggagaggcggaaggtgctga 68509 Query: 259 gcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtcacgctctcct 318 |||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 68508 gcacggtggagaaggccgggctgctgtccagggcggaggagctcggcgtcacgctctcct 68449 Query: 319 cgctggagaagctcggactgctctccaaggccgaggacctgggactcctcagcctcgtcg 378 |||| ||| ||||||| || |||||||||||||||||||| || |||||||||||||||| Sbjct: 68448 cgctcgaggagctcggcctcctctccaaggccgaggacctcggcctcctcagcctcgtcg 68389 Query: 379 ag 380 || Sbjct: 68388 ag 68387 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 107 cttcaaggtcacggccatggctcccaagaacaaggt 142 ||||||||||||||||||||||||| |||| ||||| Sbjct: 68759 cttcaaggtcacggccatggctccccagaagaaggt 68724 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 26 agcagcaatctccggctgctgctcttcgtc 55 ||||||||||||| ||||||||||||||| Sbjct: 68831 agcagcaatctccacctgctgctcttcgtc 68802
>ref|NM_106132.2| Arabidopsis thaliana CPK30; calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase AT1G74740 (CPK30) mRNA, complete cds Length = 2550 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 271 |||||||||||||||||||| || ||| |||||| ||| ||||| Sbjct: 2518 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 2475
>ref|NM_106131.2| Arabidopsis thaliana unknown protein AT1G74730 mRNA, complete cds Length = 1178 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Plus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 271 |||||||||||||||||||| || ||| |||||| ||| ||||| Sbjct: 305 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 348
>gb|AF386985.1|AF386985 Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 784 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Plus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 271 |||||||||||||||||||| || ||| |||||| ||| ||||| Sbjct: 272 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 315
>gb|AY088988.1| Arabidopsis thaliana clone 12408 mRNA, complete sequence Length = 812 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Plus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 271 |||||||||||||||||||| || ||| |||||| ||| ||||| Sbjct: 305 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 348
>gb|BT002152.1| Arabidopsis thaliana Unknown protein (At1g74730) mRNA, complete cds Length = 639 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Plus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 271 |||||||||||||||||||| || ||| |||||| ||| ||||| Sbjct: 241 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 284
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence Length = 115721 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 271 |||||||||||||||||||| || ||| |||||| ||| ||||| Sbjct: 95555 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 95512
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 425 gccgctgctcgtcgcctccatagccacggtc 455 ||||||||||||||||| ||| ||||||||| Sbjct: 75068 gccgctgctcgtcgccttcatcgccacggtc 75098
>ref|XM_505854.1| Yarrowia lipolytica CLIB122, YALI0F25091g predicted mRNA Length = 3024 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 caagaagctggagaagcgcaag 251 |||||||||||||||||||||| Sbjct: 2673 caagaagctggagaagcgcaag 2694
>ref|NM_137196.1| Drosophila melanogaster CG12964-RA (CG12964), mRNA Length = 3408 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 221 ggacgtgttcaagaagctggagaagcgcaa 250 ||||||||||||| |||||||| ||||||| Sbjct: 2346 ggacgtgttcaaggagctggagcagcgcaa 2375
>gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, region 51F-52A, BAC clone BACR03D24, complete sequence Length = 158402 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 221 ggacgtgttcaagaagctggagaagcgcaa 250 ||||||||||||| |||||||| ||||||| Sbjct: 137996 ggacgtgttcaaggagctggagcagcgcaa 137967
>emb|BX841924.1|CNS09Y5J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 757 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Plus Query: 228 ttcaagaagctggagaagcgcaaggtgctgagca 261 |||||||||||||||||||| || ||| |||||| Sbjct: 292 ttcaagaagctggagaagcgaaaagtgttgagca 325
>gb|BT024280.1| Drosophila melanogaster IP14311 full insert cDNA Length = 3936 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 221 ggacgtgttcaagaagctggagaagcgcaa 250 ||||||||||||| |||||||| ||||||| Sbjct: 2548 ggacgtgttcaaggagctggagcagcgcaa 2577
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 221 ggacgtgttcaagaagctggagaagcgcaa 250 ||||||||||||| |||||||| ||||||| Sbjct: 890 ggacgtgttcaaggagctggagcagcgcaa 861
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 221 ggacgtgttcaagaagctggagaagcgcaa 250 ||||||||||||| |||||||| ||||||| Sbjct: 78248 ggacgtgttcaaggagctggagcagcgcaa 78219
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 caagaagctggagaagcgcaag 251 |||||||||||||||||||||| Sbjct: 3243440 caagaagctggagaagcgcaag 3243461
>ref|XM_471967.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1341 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 60 ctgccccagtcccagcggggcctcccgtc 88 |||||||||||||||||| ||||||||| Sbjct: 554 ctgccccagtcccagcggatcctcccgtc 582
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 ggcggaggagctcggcgtcac 310 ||||||||||||||||||||| Sbjct: 185332 ggcggaggagctcggcgtcac 185352
>emb|AL023096.1|HS398I9 Human DNA sequence from clone RP3-398I9 on chromosome 1p34.3-36.13 Contains the 3' end of the RUNX3 gene for runt-related transcription factor 3 and a CpG island, complete sequence Length = 95241 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 ccaagaacaaggtgaacaagt 150 ||||||||||||||||||||| Sbjct: 31729 ccaagaacaaggtgaacaagt 31709
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 caaggtgctgagcaccgtcga 268 ||||||||||||||||||||| Sbjct: 3745615 caaggtgctgagcaccgtcga 3745595
>emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067G20, complete sequence Length = 145825 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 60 ctgccccagtcccagcggggcctcccgtc 88 |||||||||||||||||| ||||||||| Sbjct: 88844 ctgccccagtcccagcggatcctcccgtc 88816
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 60 ctgccccagtcccagcggggcctcccgtc 88 |||||||||||||||||| ||||||||| Sbjct: 16128094 ctgccccagtcccagcggatcctcccgtc 16128066 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gagcgaggaggcgtcggtgg 222 |||||||||||||||||||| Sbjct: 10692816 gagcgaggaggcgtcggtgg 10692835
>gb|AC166652.6| Mus musculus chromosome 8, clone RP24-129F24, complete sequence Length = 164098 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cttcgcggaggggagcgaggaggc 214 ||||| |||||||||||||||||| Sbjct: 134392 cttcggggaggggagcgaggaggc 134415
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gctcccaagaacaaggtgaa 145 |||||||||||||||||||| Sbjct: 132145 gctcccaagaacaaggtgaa 132126
>ref|XM_512669.1| PREDICTED: Pan troglodytes similar to latent transforming growth factor beta binding protein 4 (LOC456042), mRNA Length = 2112 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ctgtctgccccagtcccagc 75 |||||||||||||||||||| Sbjct: 2036 ctgtctgccccagtcccagc 2055
>ref|NM_004745.3| Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2), mRNA Length = 10101 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 1965 tgtccaaggcggaggagctc 1984
>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence Length = 145575 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gctcccaagaacaaggtgaa 145 |||||||||||||||||||| Sbjct: 137208 gctcccaagaacaaggtgaa 137227
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 catcgctgtcgctgccgctg 431 |||||||||||||||||||| Sbjct: 7716 catcgctgtcgctgccgctg 7697
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccaaggcggaggagctcggc 305 |||||||||||||||||||| Sbjct: 1518564 ccaaggcggaggagctcggc 1518583
>ref|XM_870197.1| PREDICTED: Bos taurus hypothetical protein LOC617871 (LOC617871), mRNA Length = 2508 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 tcgctgtcgctgccgctgct 433 |||||||||||||||||||| Sbjct: 761 tcgctgtcgctgccgctgct 742
>gb|BT014101.1| Lycopersicon esculentum clone 133205F, mRNA sequence Length = 801 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 119 ggccatggctcccaagaacaaggtgaacaagt 150 |||||||||||| || || ||||||||||||| Sbjct: 147 ggccatggctcctaaaaagaaggtgaacaagt 178
>ref|NM_025106.2| Homo sapiens splA/ryanodine receptor domain and SOCS box containing 1 (SPSB1), mRNA Length = 3081 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctgctctccaaggccgagga 355 |||||||||||||||||||| Sbjct: 116 ctgctctccaaggccgagga 97
>gb|BC015711.1| Homo sapiens splA/ryanodine receptor domain and SOCS box containing 1, mRNA (cDNA clone MGC:16798 IMAGE:3916157), complete cds Length = 3081 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctgctctccaaggccgagga 355 |||||||||||||||||||| Sbjct: 116 ctgctctccaaggccgagga 97
>gb|AC146188.3| Pan troglodytes BAC clone RP43-35J3 from 7, complete sequence Length = 161143 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ctgctcttcgtcctgtctgc 63 |||||||||||||||||||| Sbjct: 6573 ctgctcttcgtcctgtctgc 6592
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gaagctggagaagcgcaagg 252 |||||||||||||||||||| Sbjct: 128524 gaagctggagaagcgcaagg 128505
>gb|AC124444.4| Mus musculus BAC clone RP24-185P7 from chromosome 7, complete sequence Length = 184996 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gtggttcggcgcggggatcttcgc 196 |||||||||||||||| ||||||| Sbjct: 136127 gtggttcggcgcggggctcttcgc 136150
>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence Length = 127374 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 40807 tgtccaaggcggaggagctc 40788
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 gtggttcggcgcggggatcttcgc 196 |||||||||||||||| ||||||| Sbjct: 216549 gtggttcggcgcggggctcttcgc 216526
>gb|AC092688.3| Homo sapiens BAC clone RP11-803A21 from 7, complete sequence Length = 53249 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gtgttcaagaagctggagaa 244 |||||||||||||||||||| Sbjct: 18967 gtgttcaagaagctggagaa 18986
>gb|AC006356.3| Homo sapiens PAC clone RP5-1111L2 from 7, complete sequence Length = 153206 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ctgctcttcgtcctgtctgc 63 |||||||||||||||||||| Sbjct: 29163 ctgctcttcgtcctgtctgc 29182
>gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, complete sequence Length = 165071 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gtgttcaagaagctggagaa 244 |||||||||||||||||||| Sbjct: 102523 gtgttcaagaagctggagaa 102542
>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence Length = 151329 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 75415 tgtccaaggcggaggagctc 75434
>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence Length = 261151 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 243798 tgtccaaggcggaggagctc 243817
>emb|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 on chromosome 1p36.2-36.3 Contains the 5' end of the gene for a novel SPRY domain containing protein and a CpG island, complete sequence Length = 85116 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctgctctccaaggccgagga 355 |||||||||||||||||||| Sbjct: 73595 ctgctctccaaggccgagga 73614
>ref|XM_963055.1| PREDICTED: Tribolium castaneum similar to CG32067-PC, isoform C (LOC656529), mRNA Length = 1755 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 ttcggcgcggggatcttcgcggag 200 |||||||||| ||||||||||||| Sbjct: 375 ttcggcgcggagatcttcgcggag 352
>ref|XM_966193.1| PREDICTED: Tribolium castaneum similar to Mothers against dpp protein (LOC659927), mRNA Length = 1805 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tcaagaagctggagaagcgcaagg 252 ||||||||||| |||||||||||| Sbjct: 197 tcaagaagctgaagaagcgcaagg 220
>ref|XM_965940.1| PREDICTED: Tribolium castaneum similar to Mothers against dpp protein (LOC659654), mRNA Length = 1808 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tcaagaagctggagaagcgcaagg 252 ||||||||||| |||||||||||| Sbjct: 197 tcaagaagctgaagaagcgcaagg 220
>emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 20/20 Length = 88037 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcagccacagtgtccccggc 403 |||||||||||||||||||| Sbjct: 32702 gcagccacagtgtccccggc 32721
>gb|AY271631.1| Amycolatopsis lactamdurans isolate AAL17 putative NRPS gene, partial cds Length = 684 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 ctgctctccaaggccgaggacctg 359 ||||||||||||| |||||||||| Sbjct: 84 ctgctctccaaggtcgaggacctg 107
>gb|AF119818.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2) mRNA, alternatively spliced, partial cds Length = 10141 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 2002 tgtccaaggcggaggagctc 2021
>gb|AF119817.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2) mRNA, alternatively spliced, complete cds Length = 10126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 1987 tgtccaaggcggaggagctc 2006
>gb|AY056828.1| Oryza sativa beta-glucosidase isozyme 2 precursor, mRNA, complete cds Length = 1797 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gctcccaagaacaaggtgaa 145 |||||||||||||||||||| Sbjct: 62 gctcccaagaacaaggtgaa 43
>emb|CR609804.1| full-length cDNA clone CS0DI075YP10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 3039 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctgctctccaaggccgagga 355 |||||||||||||||||||| Sbjct: 148 ctgctctccaaggccgagga 129
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ttcaaggtcacggccatggc 127 |||||||||||||||||||| Sbjct: 864869 ttcaaggtcacggccatggc 864888
>gb|AF009204.1|AF009204 Homo sapiens PSD-95/SAP90-associated protein-2 mRNA, partial cds Length = 3412 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 1815 tgtccaaggcggaggagctc 1834
>gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, complete sequence Length = 87338 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gctgtcgctgccgctgctcg 435 |||||||||||||||||||| Sbjct: 66279 gctgtcgctgccgctgctcg 66298
>ref|XM_571720.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2035 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 catcgctgtcgctgccgctg 431 |||||||||||||||||||| Sbjct: 1904 catcgctgtcgctgccgctg 1885
>ref|XM_571719.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2068 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 catcgctgtcgctgccgctg 431 |||||||||||||||||||| Sbjct: 1937 catcgctgtcgctgccgctg 1918
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gctcccaagaacaaggtgaa 145 |||||||||||||||||||| Sbjct: 18739356 gctcccaagaacaaggtgaa 18739375
>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04, complete sequence Length = 188209 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gagcgaggaggcgtcggtgg 222 |||||||||||||||||||| Sbjct: 92043 gagcgaggaggcgtcggtgg 92062
>gb|AC010412.9| Homo sapiens chromosome 19 clone CTD-2166J9, complete sequence Length = 155085 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ctgtctgccccagtcccagc 75 |||||||||||||||||||| Sbjct: 31181 ctgtctgccccagtcccagc 31200
>gb|AC009803.17| Homo sapiens 12 BAC RP11-1028N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186044 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgtctgccccagtccca 73 |||||||||||||||||||| Sbjct: 49074 tcctgtctgccccagtccca 49055
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcagccacagtgtccccggc 403 |||||||||||||||||||| Sbjct: 4529709 gcagccacagtgtccccggc 4529728
>emb|AJ234696.1|HVU234696 Hordeum vulgare genomic DNA fragment; clone MWG0980.rev Length = 464 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gcaaggtgctgagcaccgtc 266 |||||||||||||||||||| Sbjct: 443 gcaaggtgctgagcaccgtc 462
>dbj|AK026046.1| Homo sapiens cDNA: FLJ22393 fis, clone HRC07880 Length = 1648 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctgctctccaaggccgagga 355 |||||||||||||||||||| Sbjct: 162 ctgctctccaaggccgagga 143
>dbj|AK066710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074A20, full insert sequence Length = 1811 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gctcccaagaacaaggtgaa 145 |||||||||||||||||||| Sbjct: 90 gctcccaagaacaaggtgaa 71
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcagccacagtgtccccggc 403 |||||||||||||||||||| Sbjct: 4736626 gcagccacagtgtccccggc 4736645
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 tgtcgctgccgctgctcgtcgcct 441 |||||||||||||||||| ||||| Sbjct: 4554162 tgtcgctgccgctgctcgccgcct 4554185
>gb|U87679.1|HGU87679 Hepatitis G virus isolate E3 envelope protein 2 (E2) gene, partial cds Length = 400 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gagagcgcagccacagtgtc 397 |||||||||||||||||||| Sbjct: 380 gagagcgcagccacagtgtc 361
>dbj|AB209559.1| Homo sapiens mRNA for SPRY domain-containing SOCS box protein SSB-1 variant protein Length = 1231 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctgctctccaaggccgagga 355 |||||||||||||||||||| Sbjct: 121 ctgctctccaaggccgagga 102
>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence Length = 217343 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cttcgcggaggggagcgaggaggc 214 ||||| |||||||||||||||||| Sbjct: 149566 cttcggggaggggagcgaggaggc 149543
>dbj|AB000275.1| Homo sapiens mRNA for DAP-2, partial cds Length = 1740 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgtccaaggcggaggagctc 302 |||||||||||||||||||| Sbjct: 557 tgtccaaggcggaggagctc 576 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,504,362 Number of Sequences: 3902068 Number of extensions: 3504362 Number of successful extensions: 78340 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77694 Number of HSP's gapped (non-prelim): 645 length of query: 515 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 492 effective length of database: 17,143,297,704 effective search space: 8434502470368 effective search space used: 8434502470368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)