Clone Name | baalg13 |
---|---|
Clone Library Name | barley_pub |
>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3| Length = 108 Score = 167 bits (424), Expect = 2e-41 Identities = 83/99 (83%), Positives = 92/99 (92%) Frame = +3 Query: 30 SGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVG 209 +GLFVG+NKGHVVTKRE PPRP++RKGK +KR F+R+LI+EVAG APYEKRITELLKVG Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63 Query: 210 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 326 KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G G Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAG 102
>RL36A_ARATH (O80929) 60S ribosomal protein L36-1| Length = 113 Score = 166 bits (421), Expect = 4e-41 Identities = 83/100 (83%), Positives = 91/100 (91%) Frame = +3 Query: 21 AAQSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELL 200 A ++GLFVG+NKGHVVT+REL PRP+ RKGK +KR F+R LIREVAG APYEKRITELL Sbjct: 5 AVKTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELL 64 Query: 201 KVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 320 KVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G Sbjct: 65 KVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLG 104
>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2| Length = 112 Score = 164 bits (415), Expect = 2e-40 Identities = 82/100 (82%), Positives = 91/100 (91%) Frame = +3 Query: 27 QSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKV 206 ++GLFVG+NKGHVVT+REL PRP RKGK +KR F+R+LI+EVAG APYEKRITELLKV Sbjct: 7 KTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKV 66 Query: 207 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 326 GKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G G Sbjct: 67 GKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGG 106
>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36| Length = 101 Score = 130 bits (328), Expect = 2e-30 Identities = 65/95 (68%), Positives = 79/95 (83%) Frame = +3 Query: 42 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 221 VG+NKGH VTK+ PRPS RKG ++RV VR+++REVAG+APYE+R+ ELLKVGKDKR Sbjct: 6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65 Query: 222 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 326 ALK+ KRKLGTH R KKKREEM+ VLRKM++A G Sbjct: 66 ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKG 100
>RL36_DAUCA (P52866) 60S ribosomal protein L36| Length = 106 Score = 129 bits (325), Expect = 5e-30 Identities = 63/84 (75%), Positives = 73/84 (86%) Frame = +3 Query: 30 SGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVG 209 +GLFVG+NKGH+VTK+EL PRPSDRKGK +KR HFVR+LIREVAGF PYEKRITELLKVG Sbjct: 8 TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVG 67 Query: 210 KDKRALKVAKRKLGTHKRAKKKRE 281 KDKRALKV + K+G H + K+ E Sbjct: 68 KDKRALKVRQEKVG-HSQESKEEE 90 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/30 (63%), Positives = 22/30 (73%) Frame = +2 Query: 236 EAKVGHPQEGQEEERGDVQCPQEDEICWYW 325 + KVGH QE +EEERGDVQC DE W+W Sbjct: 77 QEKVGHSQESKEEERGDVQCSPPDE-GWWW 105
>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A| Length = 99 Score = 120 bits (301), Expect = 3e-27 Identities = 59/95 (62%), Positives = 78/95 (82%) Frame = +3 Query: 33 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGK 212 GL VG+NKG V+TKR+LP RPS RKG+ +KR FVRS++REVAGFAPYE+R+ EL++ + Sbjct: 4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63 Query: 213 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 DKRA K+AK++LGT KRAK K EE++SV++ R A Sbjct: 64 DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36| Length = 104 Score = 117 bits (294), Expect = 2e-26 Identities = 59/92 (64%), Positives = 70/92 (76%) Frame = +3 Query: 42 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 221 VG+NKGH VTK PR S R+G+ TK FVR +IREV GFAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67 Query: 222 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 ALK K+++GTH RAK+KREE+S+VL MR A Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99
>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36| Length = 104 Score = 117 bits (294), Expect = 2e-26 Identities = 59/92 (64%), Positives = 70/92 (76%) Frame = +3 Query: 42 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 221 VG+NKGH VTK PR S R+G+ TK FVR +IREV GFAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67 Query: 222 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 ALK K+++GTH RAK+KREE+S+VL MR A Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99
>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B| Length = 99 Score = 117 bits (294), Expect = 2e-26 Identities = 58/95 (61%), Positives = 76/95 (80%) Frame = +3 Query: 33 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGK 212 GL VG+NKG +TKR+LP RPS RKG +KR FVRS++REVAGFAPYE+R+ EL++ + Sbjct: 4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQ 63 Query: 213 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 DKRA K+AK++LGT KRAK K EE++SV++ R A Sbjct: 64 DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
>RL36_BOVIN (Q3T171) 60S ribosomal protein L36| Length = 104 Score = 117 bits (292), Expect = 3e-26 Identities = 59/92 (64%), Positives = 70/92 (76%) Frame = +3 Query: 42 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 221 VG+NKGH VTK PR S R+G+ TK FVR +IREV GFAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67 Query: 222 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 ALK K+++GTH RAK+KREE+S+VL MR A Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99
>RL36_RAT (P39032) 60S ribosomal protein L36| Length = 104 Score = 115 bits (288), Expect = 1e-25 Identities = 58/92 (63%), Positives = 69/92 (75%) Frame = +3 Query: 42 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 221 VG+NKGH VTK PR S R+G+ TK FVR +IREV FAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67 Query: 222 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 ALK K+++GTH RAK+KREE+S+VL MR A Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99
>RL36_MOUSE (P47964) 60S ribosomal protein L36| Length = 104 Score = 109 bits (272), Expect = 7e-24 Identities = 55/92 (59%), Positives = 66/92 (71%) Frame = +3 Query: 42 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 221 VG+NKGH VTK PR S R+ + T FVR +IREV GFAPYE+R ELLKV K KR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67 Query: 222 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 ALK K+++GTH RAK+KREE+S+VL M A Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMEEA 99
>RL36_CAEEL (P49181) 60S ribosomal protein L36| Length = 103 Score = 107 bits (268), Expect = 2e-23 Identities = 49/95 (51%), Positives = 68/95 (71%) Frame = +3 Query: 33 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGK 212 GL VG+NKGH T+ + R + KG +K+ VR L+RE+ GFAPYE+R+ E+L++ K Sbjct: 7 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 66 Query: 213 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 DKRALK KR++GTH+RAK KREE+ +V+ R A Sbjct: 67 DKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 101
>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)| Length = 105 Score = 104 bits (259), Expect = 2e-22 Identities = 52/98 (53%), Positives = 71/98 (72%) Frame = +3 Query: 24 AQSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLK 203 A++GL VG+NKGH T R + PR S KG +KR FVR +++EVAG APYE+R+ ELL+ Sbjct: 7 AKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLR 66 Query: 204 VGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 317 KDKRA K+AK++LGT RAK+K +E+ V+ + R A Sbjct: 67 NSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESRRA 104
>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)| Length = 99 Score = 103 bits (258), Expect = 3e-22 Identities = 49/96 (51%), Positives = 72/96 (75%) Frame = +3 Query: 24 AQSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLK 203 A+SG+ G+NKG T +E+ P+ S RKG ++R FVRS+++EVAG APYE+R+ EL++ Sbjct: 2 AKSGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIR 61 Query: 204 VGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 311 +KRA K+AK++LGTHKRA +K EEM+ V+ + R Sbjct: 62 NAGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97
>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)| Length = 115 Score = 103 bits (257), Expect = 4e-22 Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 10/112 (8%) Frame = +3 Query: 18 VAAQSGLFVGINKGHVVTKRELPPRPSDRKGKG----------TKRVHFVRSLIREVAGF 167 +A + L +G+NKGH +K D+K KG T+ F+R L+REV G Sbjct: 1 MAVRYELAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGH 60 Query: 168 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGT 323 APYEKR ELLKV KDKRALK KR+LGTH RAK+KREE+S++L ++R A T Sbjct: 61 APYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQT 112
>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)| Length = 99 Score = 93.6 bits (231), Expect = 4e-19 Identities = 44/97 (45%), Positives = 69/97 (71%) Frame = +3 Query: 21 AAQSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELL 200 A ++G+ +G+NKG VT+ P+ S +KG + R FVRSL+RE+AG +PYE+R+ +L+ Sbjct: 1 AVKTGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLI 60 Query: 201 KVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 311 + +KRA KVAK++LG+ RAK K EEM++++ R Sbjct: 61 RNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97
>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)| Length = 99 Score = 91.7 bits (226), Expect = 2e-18 Identities = 43/95 (45%), Positives = 67/95 (70%) Frame = +3 Query: 27 QSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKV 206 ++G+ +G+NKG VT P+ S +KG + R FVRSL+RE+AG +PYE+R+ +L++ Sbjct: 3 KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62 Query: 207 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 311 +KRA KVAK++LG+ RAK K EEM++++ R Sbjct: 63 SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97
>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)| Length = 178 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = -2 Query: 343 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNFRFATFRARLSLPTLRSSVIRFSY 173 + + +P + R LD+S+L LA W P +F L+L +R S+ + Sbjct: 114 FLYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRF 170
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +3 Query: 168 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 290 A Y K + + LK K+KR K+AKR+ + RA + + E S Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247
>ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)| Length = 184 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 343 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 173 + F +P AD R LD+S+L LA W P+ F L+L +R S+ +Y Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNTHLALDDIRESIAELAY 173
>ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)| Length = 186 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -2 Query: 343 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 173 + F +P AD R LD+S+L LA W P F L+L +R S+ +Y Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELARRWKPELLNGFEKKNTHLALDDIRESIAELAY 173
>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)| Length = 454 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = +3 Query: 156 VAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 320 + P E+R +++ + + KR + + + + K+ EEM ++RK++ AG Sbjct: 371 INSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKLQKAG 425
>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen| D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3) (Thyroid-associated ophthalmopathy autoantigen) (Smooth muscle leiomodin) (SM-Lmod) Length = 572 Score = 30.0 bits (66), Expect = 5.5 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 30/117 (25%) Frame = +3 Query: 45 GINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIRE------VAGFAPYEKRI------ 188 G +G +K+ L PR + GK KR +S R+ +G P E++I Sbjct: 73 GQERGRDASKKALGPRRNSDLGKEPKRGGLKKSFSRDRDEAGGKSGEKPKEEKIIRGIDK 132 Query: 189 ------TELLKVGKD----KRALKVAK--------RKLGTHKRAKKKREEMSSVLRK 305 + + GKD +RA+ K R G + KKREEM V +K Sbjct: 133 GRVRAAVDKKEAGKDGRGEERAVATKKEEEKKGGDRNTGLSRDKDKKREEMKEVAKK 189
>MRGX2_BUNHO (Q4QXU6) Mas-related G-protein coupled receptor member X2| Length = 329 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = +3 Query: 474 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVV 605 C+IFD + AWL F L LL L S G+ L+LTI L V+ Sbjct: 180 CQIFDFITAAWLIFLFVVLCASSLALLVRILCGSRGLPLTRLYLTILLTVL 230
>MRGX2_PANTR (Q4QXX9) Mas-related G-protein coupled receptor member X2| Length = 329 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = +3 Query: 474 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVV 605 C+ FDL+ AWL F L LL L S G+ L+LTI L V+ Sbjct: 179 CQTFDLITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVL 229
>MRGX2_GORGO (Q4QXU0) Mas-related G-protein coupled receptor member X2| Length = 329 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = +3 Query: 474 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVV 605 C+ FDL+ AWL F L LL L S G+ L+LTI L V+ Sbjct: 179 CQTFDLITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVL 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,182,012 Number of Sequences: 219361 Number of extensions: 1801616 Number of successful extensions: 5805 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5574 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5794 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)