ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalg10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482576.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
2dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 86 8e-14
4dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic D... 86 8e-14
5ref|XM_628938.1| Dictyostelium discoideum hypothetical protein (... 42 1.1
6gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, com... 42 1.1
7gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, com... 42 1.1
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
9dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
10dbj|AP006529.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
11emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chro... 42 1.1
12ref|NM_112065.2| Arabidopsis thaliana catalytic AT3G12290 mRNA, ... 40 4.4
13ref|XM_763484.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 4.4
14gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, com... 40 4.4
15emb|BX824723.1|CNS0A5N1 Arabidopsis thaliana Full-length cDNA Co... 40 4.4
16emb|BX824645.1|CNS0A5KE Arabidopsis thaliana Full-length cDNA Co... 40 4.4
17gb|AC107613.15| Homo sapiens X BAC RP11-501H19 (Roswell Park Can... 40 4.4
18gb|BT004612.1| Arabidopsis thaliana At3g12290 gene, complete cds 40 4.4
19gb|AY085538.1| Arabidopsis thaliana clone 156450 mRNA, complete ... 40 4.4 
>ref|XM_482576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score =  125 bits (63), Expect = 1e-25
 Identities = 158/189 (83%), Gaps = 1/189 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    acagttttctacatcttggtcagaatgtagcatatgaatcacttcatgatttgcgtgagc 60
            |||| |||||||| |||||||||||||| || || |||||||| |||||  ||| |||||
Sbjct: 929  acagctttctacaacttggtcagaatgttgcgtacgaatcactccatgacatgc-tgagc 987

                                                                        
Query: 61   acacctgcccttgaatcaatgtccacacatttaattcatcaagctacatacaaagatcct 120
            |||||||  | | |||||||| | ||||||||||||  ||||||||  |||| |||||||
Sbjct: 988  acacctgggcataaatcaatggcaacacatttaatttctcaagctaagtacagagatcct 1047

                                                                        
Query: 121  tgcaccccaaagggattttcgcgcatggngggactagttaaacctcttgctagtgttctc 180
            ||||| |||| ||||||||||| ||||| ||||  |||||||| || ||| |||||||| 
Sbjct: 1048 tgcactccaaggggattttcgcccatggagggagcagttaaacttcctgccagtgttctt 1107

                     
Query: 181  gantcgaag 189
            || ||||||
Sbjct: 1108 gagtcgaag 1116



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                        
Query: 198  tgctcatgcggntggtaacttctctgagtgtagatctgnggtgagaacattattgcacan 257
            ||||||||| | |||||||||||| || ||||||||||  |    |||| ||||||| | 
Sbjct: 1134 tgctcatgctgttggtaacttctccgaatgtagatctgcagcactaacactattgcagaa 1193

                                                                     
Query: 258  aggacaagaggaatgtatatatcatgattgtcgtctgggagcancatttgtaccaga 314
            ||||  |||||||||||  || ||||| || ||| |||||||| |||||||||||||
Sbjct: 1194 aggaagagaggaatgtaggtaccatgaatgccgtatgggagcagcatttgtaccaga 1250
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>dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J16, full
            insert sequence
          Length = 2052

 Score =  125 bits (63), Expect = 1e-25
 Identities = 158/189 (83%), Gaps = 1/189 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    acagttttctacatcttggtcagaatgtagcatatgaatcacttcatgatttgcgtgagc 60
            |||| |||||||| |||||||||||||| || || |||||||| |||||  ||| |||||
Sbjct: 929  acagctttctacaacttggtcagaatgttgcgtacgaatcactccatgacatgc-tgagc 987

                                                                        
Query: 61   acacctgcccttgaatcaatgtccacacatttaattcatcaagctacatacaaagatcct 120
            |||||||  | | |||||||| | ||||||||||||  ||||||||  |||| |||||||
Sbjct: 988  acacctgggcataaatcaatggcaacacatttaatttctcaagctaagtacagagatcct 1047

                                                                        
Query: 121  tgcaccccaaagggattttcgcgcatggngggactagttaaacctcttgctagtgttctc 180
            ||||| |||| ||||||||||| ||||| ||||  |||||||| || ||| |||||||| 
Sbjct: 1048 tgcactccaaggggattttcgcccatggagggagcagttaaacttcctgccagtgttctt 1107

                     
Query: 181  gantcgaag 189
            || ||||||
Sbjct: 1108 gagtcgaag 1116



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                        
Query: 198  tgctcatgcggntggtaacttctctgagtgtagatctgnggtgagaacattattgcacan 257
            ||||||||| | |||||||||||| || ||||||||||  |    |||| ||||||| | 
Sbjct: 1134 tgctcatgctgttggtaacttctccgaatgtagatctgcagcactaacactattgcagaa 1193

                                                                     
Query: 258  aggacaagaggaatgtatatatcatgattgtcgtctgggagcancatttgtaccaga 314
            ||||  |||||||||||  || ||||| || ||| |||||||| |||||||||||||
Sbjct: 1194 aggaagagaggaatgtaggtaccatgaatgccgtatgggagcagcatttgtaccaga 1250
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 89/105 (84%)
 Strand = Plus / Plus

                                                                            
Query: 85       acacatttaattcatcaagctacatacaaagatccttgcaccccaaagggattttcgcgc 144
                ||||||||||||  ||||||||  |||| |||||||||||| |||| ||||||||||| |
Sbjct: 21184687 acacatttaatttctcaagctaagtacagagatccttgcactccaaggggattttcgccc 21184746

                                                             
Query: 145      atggngggactagttaaacctcttgctagtgttctcgantcgaag 189
                |||| ||||  |||||||| || ||| |||||||| || ||||||
Sbjct: 21184747 atggagggagcagttaaacttcctgccagtgttcttgagtcgaag 21184791



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 264      agaggaatgtatatatcatgattgtcgtctgggagcancatttgtaccaga 314
                |||||||||||  || ||||| || ||| |||||||| |||||||||||||
Sbjct: 21185289 agaggaatgtaggtaccatgaatgccgtatgggagcagcatttgtaccaga 21185339



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 198      tgctcatgcggntggtaacttctctgagtgtagatctg 235
                ||||||||| | |||||||||||| || ||||||||||
Sbjct: 21184809 tgctcatgctgttggtaacttctccgaatgtagatctg 21184846
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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 89/105 (84%)
 Strand = Plus / Plus

                                                                         
Query: 85    acacatttaattcatcaagctacatacaaagatccttgcaccccaaagggattttcgcgc 144
             ||||||||||||  ||||||||  |||| |||||||||||| |||| ||||||||||| |
Sbjct: 10964 acacatttaatttctcaagctaagtacagagatccttgcactccaaggggattttcgccc 11023

                                                          
Query: 145   atggngggactagttaaacctcttgctagtgttctcgantcgaag 189
             |||| ||||  |||||||| || ||| |||||||| || ||||||
Sbjct: 11024 atggagggagcagttaaacttcctgccagtgttcttgagtcgaag 11068



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 264   agaggaatgtatatatcatgattgtcgtctgggagcancatttgtaccaga 314
             |||||||||||  || ||||| || ||| |||||||| |||||||||||||
Sbjct: 11566 agaggaatgtaggtaccatgaatgccgtatgggagcagcatttgtaccaga 11616



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 198   tgctcatgcggntggtaacttctctgagtgtagatctg 235
             ||||||||| | |||||||||||| || ||||||||||
Sbjct: 11086 tgctcatgctgttggtaacttctccgaatgtagatctg 11123
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>ref|XM_628938.1| Dictyostelium discoideum hypothetical protein (DDB0192143), partial
           mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 32  atatgaatcacttcatgattt 52
           |||||||||||||||||||||
Sbjct: 563 atatgaatcacttcatgattt 543
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>gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, complete sequence
          Length = 148599

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ttctacatcttggtcagaatg 27
             |||||||||||||||||||||
Sbjct: 25444 ttctacatcttggtcagaatg 25424
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>gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, complete sequence
          Length = 181930

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ttctacatcttggtcagaatg 27
             |||||||||||||||||||||
Sbjct: 65473 ttctacatcttggtcagaatg 65453
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 37       aatcacttcatgatttgcgtg 57
                |||||||||||||||||||||
Sbjct: 11993303 aatcacttcatgatttgcgtg 11993323
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>dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:B1042B08
          Length = 142032

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 37   aatcacttcatgatttgcgtg 57
            |||||||||||||||||||||
Sbjct: 2151 aatcacttcatgatttgcgtg 2171
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>dbj|AP006529.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1114D08
          Length = 148354

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     aatcacttcatgatttgcgtg 57
              |||||||||||||||||||||
Sbjct: 124344 aatcacttcatgatttgcgtg 124364
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>emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chromosome X, complete
              sequence
          Length = 225435

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 7      ttctacatcttggtcagaatgtagc 31
              |||||||||||| ||||||||||||
Sbjct: 213759 ttctacatcttgatcagaatgtagc 213735
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>ref|NM_112065.2| Arabidopsis thaliana catalytic AT3G12290 mRNA, complete cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 tccttgcaccccaaagggat 136
           ||||||||||||||||||||
Sbjct: 530 tccttgcaccccaaagggat 549
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>ref|XM_763484.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_76_3986_10585)
            partial mRNA
          Length = 6600

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 66   tgcccttgaatcaatgtccacaca 89
            |||||||||||||| |||||||||
Sbjct: 3243 tgcccttgaatcaaagtccacaca 3266
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>gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, complete sequence
          Length = 203401

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     tcaatgtccacacatttaat 95
              ||||||||||||||||||||
Sbjct: 130753 tcaatgtccacacatttaat 130734
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>emb|BX824723.1|CNS0A5N1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH68ZA04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 995

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 tccttgcaccccaaagggat 136
           ||||||||||||||||||||
Sbjct: 473 tccttgcaccccaaagggat 492
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>emb|BX824645.1|CNS0A5KE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH61ZH12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 984

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 tccttgcaccccaaagggat 136
           ||||||||||||||||||||
Sbjct: 442 tccttgcaccccaaagggat 461
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>gb|AC107613.15| Homo sapiens X BAC RP11-501H19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 132501

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    gacaagaggaatgtatatat 279
              ||||||||||||||||||||
Sbjct: 110758 gacaagaggaatgtatatat 110777
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>gb|BT004612.1| Arabidopsis thaliana At3g12290 gene, complete cds
          Length = 900

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 tccttgcaccccaaagggat 136
           ||||||||||||||||||||
Sbjct: 441 tccttgcaccccaaagggat 460
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>gb|AY085538.1| Arabidopsis thaliana clone 156450 mRNA, complete sequence
          Length = 1182

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 tccttgcaccccaaagggat 136
           ||||||||||||||||||||
Sbjct: 530 tccttgcaccccaaagggat 549


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,539,203
Number of Sequences: 3902068
Number of extensions: 2539203
Number of successful extensions: 42599
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42541
Number of HSP's gapped (non-prelim): 56
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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