ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalf19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 396 e-107
2gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome... 396 e-107
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 396 e-107
4dbj|AK121215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
5gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-3... 44 0.43
6ref|XM_422710.1| PREDICTED: Gallus gallus similar to Carboxypept... 42 1.7
7ref|XM_416901.1| PREDICTED: Gallus gallus similar to Rev1S (LOC4... 42 1.7
8gb|AC121852.4| Mus musculus chromosome 3 clone RP24-93P18, compl... 42 1.7
9gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, comple... 42 1.7
10ref|XM_510006.1| PREDICTED: Pan troglodytes similar to muscle be... 40 6.7
11gb|AC117812.9| Mus musculus chromosome 5, clone RP24-571E8, comp... 40 6.7
12ref|NM_001024858.1| Homo sapiens spectrin, beta, erythrocytic (i... 40 6.7
13ref|NM_010427.2| Mus musculus hepatocyte growth factor (Hgf), mRNA 40 6.7
14ref|NM_000347.4| Homo sapiens spectrin, beta, erythrocytic (incl... 40 6.7
15gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome... 40 6.7
16gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 6.7
17gb|AC116420.8| Mus musculus chromosome 1, clone RP24-141B16, com... 40 6.7
18gb|AC113511.7| Mus musculus chromosome 1, clone RP23-378O19, com... 40 6.7
19emb|AL354773.8| Human DNA sequence from clone RP5-855L24 on chro... 40 6.7
20gb|AF013185.1|AH005869S14 Homo sapiens beta-spectrin (HSpTB1) ge... 40 6.7
21emb|X72307.1|MMHGF M.musculus mRNA for hepatocyte growth factor 40 6.7
22emb|X59511.1|HSBSPEC3 H.sapiens mRNA for beta-spectrin (3' partial) 40 6.7
23emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 6.7
24gb|AF465439.1| Homo sapiens beta I spectrin form betaI sigma3 mR... 40 6.7
25gb|S71816.1| hepatocyte growth factor [mice, liver, mRNA Partial... 40 6.7
26dbj|AK042121.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 6.7
27gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's H... 40 6.7
28gb|AC072023.9| Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer ... 40 6.7
29dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 6.7
30emb|AL121774.5|CNS01DSF Human chromosome 14 DNA sequence BAC R-4... 40 6.7
31emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chro... 40 6.7
32dbj|AB209415.1| Homo sapiens mRNA for spectrin, beta, erythrocyt... 40 6.7
33emb|X84046.1|MMHGFSF M.musculus mRNA for hepatocyte growth facto... 40 6.7
34gb|M37884.1|HUMSPC1 Human muscle beta spectrin mRNA, 3' end 40 6.7
35gb|J05500.1|HUMSPTB Human beta-spectrin (SPTB) mRNA, complete cds 40 6.7
36dbj|D10213.1|MUSHGF2 Mouse mRNA for hepatocyte growth factor, co... 40 6.7
37dbj|D10212.1|MUSHGF1 Mouse mRNA for hepatocyte growth factor, co... 40 6.7
38gb|U00905.1|HSU00905 Human beta-spectrin (HSPTB1) gene, Humbspec... 40 6.7

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  396 bits (200), Expect = e-107
 Identities = 377/436 (86%)
 Strand = Plus / Plus

                                                                           
Query: 58      catccaagttcaagagggttggaaggaagaccacattgcgtcaggatttggccaatgccc 117
               ||||||||||||||||||||||||| ||||| || ||||| |||||  | || |||||||
Sbjct: 8653279 catccaagttcaagagggttggaagaaagactaccttgcggcaggaccttgctaatgccc 8653338

                                                                           
Query: 118     ttgatataagggccttcgagaggacgacaaagcttggccactgtgatgtcgagcttctga 177
               |||||||||| ||||| ||||  |||||||||||||||| |||||| |  ||||||||||
Sbjct: 8653339 ttgatataagagcctttgagaaaacgacaaagcttggccgctgtgacgcggagcttctga 8653398

                                                                           
Query: 178     ggaaagagatgaatgagactgatgtccctgtatcgtactcaggcacgggcatcccagaga 237
               ||||||||||||| ||||||||||||||  |||| ||||||||| | |||| ||||||||
Sbjct: 8653399 ggaaagagatgaacgagactgatgtccccatatcctactcaggcgctggcaacccagaga 8653458

                                                                           
Query: 238     agtcgatcaggaaagcagctcttgaggttattcttcgcaggctcctatctttcctcaagc 297
               |||| ||  ||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 8653459 agtcaatacggaaagcagctctcgaggttattctccacaggctcctatctttcctcaagc 8653518

                                                                           
Query: 298     cagacaccttccagggtgcagtgaaggcaatgaatgaaagaattctctctgtccttgatg 357
               |||| ||||| |||||| | |||||||| || || |||||||| ||||| ||||||||||
Sbjct: 8653519 cagatacctttcagggttctgtgaaggcgattaacgaaagaatcctctccgtccttgatg 8653578

                                                                           
Query: 358     cttctggctctggccgcgttgatctcgggatgttctttgccatcattgctccaatctgtt 417
               | ||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||||
Sbjct: 8653579 cctctggttctggccgtgttgaccttgggatgttctttgctattatcgccccaatttgtt 8653638

                                                                           
Query: 418     ctggtccagtggataggcgcaagcgtgtcgttttcgatgcactcctttggcgtcctgcaa 477
               ||||||| ||||||| ||||||||| || || || |||||||| ||||||||||| ||||
Sbjct: 8653639 ctggtcctgtggataagcgcaagcgggttgtctttgatgcacttctttggcgtccggcaa 8653698

                               
Query: 478     gcgaaggtggcagggg 493
               | |||||  |||||||
Sbjct: 8653699 gtgaaggaagcagggg 8653714



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>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02,
              complete sequence
          Length = 137327

 Score =  396 bits (200), Expect = e-107
 Identities = 377/436 (86%)
 Strand = Plus / Plus

                                                                          
Query: 58     catccaagttcaagagggttggaaggaagaccacattgcgtcaggatttggccaatgccc 117
              ||||||||||||||||||||||||| ||||| || ||||| |||||  | || |||||||
Sbjct: 134251 catccaagttcaagagggttggaagaaagactaccttgcggcaggaccttgctaatgccc 134310

                                                                          
Query: 118    ttgatataagggccttcgagaggacgacaaagcttggccactgtgatgtcgagcttctga 177
              |||||||||| ||||| ||||  |||||||||||||||| |||||| |  ||||||||||
Sbjct: 134311 ttgatataagagcctttgagaaaacgacaaagcttggccgctgtgacgcggagcttctga 134370

                                                                          
Query: 178    ggaaagagatgaatgagactgatgtccctgtatcgtactcaggcacgggcatcccagaga 237
              ||||||||||||| ||||||||||||||  |||| ||||||||| | |||| ||||||||
Sbjct: 134371 ggaaagagatgaacgagactgatgtccccatatcctactcaggcgctggcaacccagaga 134430

                                                                          
Query: 238    agtcgatcaggaaagcagctcttgaggttattcttcgcaggctcctatctttcctcaagc 297
              |||| ||  ||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 134431 agtcaatacggaaagcagctctcgaggttattctccacaggctcctatctttcctcaagc 134490

                                                                          
Query: 298    cagacaccttccagggtgcagtgaaggcaatgaatgaaagaattctctctgtccttgatg 357
              |||| ||||| |||||| | |||||||| || || |||||||| ||||| ||||||||||
Sbjct: 134491 cagatacctttcagggttctgtgaaggcgattaacgaaagaatcctctccgtccttgatg 134550

                                                                          
Query: 358    cttctggctctggccgcgttgatctcgggatgttctttgccatcattgctccaatctgtt 417
              | ||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||||
Sbjct: 134551 cctctggttctggccgtgttgaccttgggatgttctttgctattatcgccccaatttgtt 134610

                                                                          
Query: 418    ctggtccagtggataggcgcaagcgtgtcgttttcgatgcactcctttggcgtcctgcaa 477
              ||||||| ||||||| ||||||||| || || || |||||||| ||||||||||| ||||
Sbjct: 134611 ctggtcctgtggataagcgcaagcgggttgtctttgatgcacttctttggcgtccggcaa 134670

                              
Query: 478    gcgaaggtggcagggg 493
              | |||||  |||||||
Sbjct: 134671 gtgaaggaagcagggg 134686



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  396 bits (200), Expect = e-107
 Identities = 377/436 (86%)
 Strand = Plus / Plus

                                                                           
Query: 58      catccaagttcaagagggttggaaggaagaccacattgcgtcaggatttggccaatgccc 117
               ||||||||||||||||||||||||| ||||| || ||||| |||||  | || |||||||
Sbjct: 8651114 catccaagttcaagagggttggaagaaagactaccttgcggcaggaccttgctaatgccc 8651173

                                                                           
Query: 118     ttgatataagggccttcgagaggacgacaaagcttggccactgtgatgtcgagcttctga 177
               |||||||||| ||||| ||||  |||||||||||||||| |||||| |  ||||||||||
Sbjct: 8651174 ttgatataagagcctttgagaaaacgacaaagcttggccgctgtgacgcggagcttctga 8651233

                                                                           
Query: 178     ggaaagagatgaatgagactgatgtccctgtatcgtactcaggcacgggcatcccagaga 237
               ||||||||||||| ||||||||||||||  |||| ||||||||| | |||| ||||||||
Sbjct: 8651234 ggaaagagatgaacgagactgatgtccccatatcctactcaggcgctggcaacccagaga 8651293

                                                                           
Query: 238     agtcgatcaggaaagcagctcttgaggttattcttcgcaggctcctatctttcctcaagc 297
               |||| ||  ||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 8651294 agtcaatacggaaagcagctctcgaggttattctccacaggctcctatctttcctcaagc 8651353

                                                                           
Query: 298     cagacaccttccagggtgcagtgaaggcaatgaatgaaagaattctctctgtccttgatg 357
               |||| ||||| |||||| | |||||||| || || |||||||| ||||| ||||||||||
Sbjct: 8651354 cagatacctttcagggttctgtgaaggcgattaacgaaagaatcctctccgtccttgatg 8651413

                                                                           
Query: 358     cttctggctctggccgcgttgatctcgggatgttctttgccatcattgctccaatctgtt 417
               | ||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||||
Sbjct: 8651414 cctctggttctggccgtgttgaccttgggatgttctttgctattatcgccccaatttgtt 8651473

                                                                           
Query: 418     ctggtccagtggataggcgcaagcgtgtcgttttcgatgcactcctttggcgtcctgcaa 477
               ||||||| ||||||| ||||||||| || || || |||||||| ||||||||||| ||||
Sbjct: 8651474 ctggtcctgtggataagcgcaagcgggttgtctttgatgcacttctttggcgtccggcaa 8651533

                               
Query: 478     gcgaaggtggcagggg 493
               | |||||  |||||||
Sbjct: 8651534 gtgaaggaagcagggg 8651549



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>dbj|AK121215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089O12, full
            insert sequence
          Length = 3172

 Score =  396 bits (200), Expect = e-107
 Identities = 377/436 (86%)
 Strand = Plus / Plus

                                                                        
Query: 58   catccaagttcaagagggttggaaggaagaccacattgcgtcaggatttggccaatgccc 117
            ||||||||||||||||||||||||| ||||| || ||||| |||||  | || |||||||
Sbjct: 1844 catccaagttcaagagggttggaagaaagactaccttgcggcaggaccttgctaatgccc 1903

                                                                        
Query: 118  ttgatataagggccttcgagaggacgacaaagcttggccactgtgatgtcgagcttctga 177
            |||||||||| ||||| ||||  |||||||||||||||| |||||| |  ||||||||||
Sbjct: 1904 ttgatataagagcctttgagaaaacgacaaagcttggccgctgtgacgcggagcttctga 1963

                                                                        
Query: 178  ggaaagagatgaatgagactgatgtccctgtatcgtactcaggcacgggcatcccagaga 237
            ||||||||||||| ||||||||||||||  |||| ||||||||| | |||| ||||||||
Sbjct: 1964 ggaaagagatgaacgagactgatgtccccatatcctactcaggcgctggcaacccagaga 2023

                                                                        
Query: 238  agtcgatcaggaaagcagctcttgaggttattcttcgcaggctcctatctttcctcaagc 297
            |||| ||  ||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 2024 agtcaatacggaaagcagctctcgaggttattctccacaggctcctatctttcctcaagc 2083

                                                                        
Query: 298  cagacaccttccagggtgcagtgaaggcaatgaatgaaagaattctctctgtccttgatg 357
            |||| ||||| |||||| | |||||||| || || |||||||| ||||| ||||||||||
Sbjct: 2084 cagatacctttcagggttctgtgaaggcgattaacgaaagaatcctctccgtccttgatg 2143

                                                                        
Query: 358  cttctggctctggccgcgttgatctcgggatgttctttgccatcattgctccaatctgtt 417
            | ||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||||
Sbjct: 2144 cctctggttctggccgtgttgaccttgggatgttctttgctattatcgccccaatttgtt 2203

                                                                        
Query: 418  ctggtccagtggataggcgcaagcgtgtcgttttcgatgcactcctttggcgtcctgcaa 477
            ||||||| ||||||| ||||||||| || || || |||||||| ||||||||||| ||||
Sbjct: 2204 ctggtcctgtggataagcgcaagcgggttgtctttgatgcacttctttggcgtccggcaa 2263

                            
Query: 478  gcgaaggtggcagggg 493
            | |||||  |||||||
Sbjct: 2264 gtgaaggaagcagggg 2279



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>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence
          Length = 219769

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 48     attgtagaagcatccaagttcaagag 73
              |||||||| |||||||||||||||||
Sbjct: 134483 attgtagatgcatccaagttcaagag 134458



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>ref|XM_422710.1| PREDICTED: Gallus gallus similar to Carboxypeptidase N 83 kDa chain
           (Carboxypeptidase N regulatory subunit) (LOC424899),
           mRNA
          Length = 5817

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 477 agcgaaggtggcaggggccag 497
           |||||||||||||||||||||
Sbjct: 879 agcgaaggtggcaggggccag 859



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>ref|XM_416901.1| PREDICTED: Gallus gallus similar to Rev1S (LOC418704), mRNA
          Length = 2280

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 244 tcaggaaagcagctcttgaggttat 268
           |||||||||||||||| ||||||||
Sbjct: 641 tcaggaaagcagctctggaggttat 665



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>gb|AC121852.4| Mus musculus chromosome 3 clone RP24-93P18, complete sequence
          Length = 206414

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 327   atgaatgaaagaattctctct 347
             |||||||||||||||||||||
Sbjct: 46860 atgaatgaaagaattctctct 46840



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>gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, complete sequence
          Length = 205323

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    atgaatgaaagaattctctct 347
              |||||||||||||||||||||
Sbjct: 202048 atgaatgaaagaattctctct 202028



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>ref|XM_510006.1| PREDICTED: Pan troglodytes similar to muscle beta spectrin
            (LOC452970), mRNA
          Length = 7365

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 6351 gaggaaagagatgaatgaga 6370



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>gb|AC117812.9| Mus musculus chromosome 5, clone RP24-571E8, complete sequence
          Length = 127532

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    tgaatgagactgatgtccct 206
              ||||||||||||||||||||
Sbjct: 126669 tgaatgagactgatgtccct 126650



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>ref|NM_001024858.1| Homo sapiens spectrin, beta, erythrocytic (includes spherocytosis,
            clinical type I) (SPTB), transcript variant 1, mRNA
          Length = 10064

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 6024 gaggaaagagatgaatgaga 6043



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>ref|NM_010427.2| Mus musculus hepatocyte growth factor (Hgf), mRNA
          Length = 2757

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  tgaatgagactgatgtccct 206
            ||||||||||||||||||||
Sbjct: 1004 tgaatgagactgatgtccct 1023



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>ref|NM_000347.4| Homo sapiens spectrin, beta, erythrocytic (includes spherocytosis,
            clinical type I) (SPTB), transcript variant 2, mRNA
          Length = 6695

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 6024 gaggaaagagatgaatgaga 6043



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>gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome 17, complete sequence
          Length = 177231

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    gacaaagcttggccactgtg 162
              ||||||||||||||||||||
Sbjct: 166788 gacaaagcttggccactgtg 166807



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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tgaatgagactgatgtccct 206
             ||||||||||||||||||||
Sbjct: 94215 tgaatgagactgatgtccct 94234



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>gb|AC116420.8| Mus musculus chromosome 1, clone RP24-141B16, complete sequence
          Length = 191497

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 333    gaaagaattctctctgtccttgat 356
              ||||||| ||||||||||||||||
Sbjct: 167308 gaaagaactctctctgtccttgat 167285



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>gb|AC113511.7| Mus musculus chromosome 1, clone RP23-378O19, complete sequence
          Length = 223985

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 333    gaaagaattctctctgtccttgat 356
              ||||||| ||||||||||||||||
Sbjct: 204158 gaaagaactctctctgtccttgat 204181



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>emb|AL354773.8| Human DNA sequence from clone RP5-855L24 on chromosome 20 Contains part
             of the C20orf133 gene, complete sequence
          Length = 117609

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   aaagagatgaatgagactga 199
             ||||||||||||||||||||
Sbjct: 98022 aaagagatgaatgagactga 98041



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>gb|AF013185.1|AH005869S14 Homo sapiens beta-spectrin (HSpTB1) gene, exon 29
          Length = 250

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 gaggaaagagatgaatgaga 195
           ||||||||||||||||||||
Sbjct: 134 gaggaaagagatgaatgaga 153



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>emb|X72307.1|MMHGF M.musculus mRNA for hepatocyte growth factor
          Length = 2320

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 tgaatgagactgatgtccct 206
           ||||||||||||||||||||
Sbjct: 942 tgaatgagactgatgtccct 961



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>emb|X59511.1|HSBSPEC3 H.sapiens mRNA for beta-spectrin (3' partial)
          Length = 954

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 gaggaaagagatgaatgaga 195
           ||||||||||||||||||||
Sbjct: 246 gaggaaagagatgaatgaga 265



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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    ttgccatcattgctccaatc 413
              ||||||||||||||||||||
Sbjct: 261008 ttgccatcattgctccaatc 261027



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>gb|AF465439.1| Homo sapiens beta I spectrin form betaI sigma3 mRNA, partial cds;
            alternatively spliced
          Length = 3456

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 1965 gaggaaagagatgaatgaga 1984



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>gb|S71816.1| hepatocyte growth factor [mice, liver, mRNA Partial, 2281 nt]
          Length = 2281

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 tgaatgagactgatgtccct 206
           ||||||||||||||||||||
Sbjct: 881 tgaatgagactgatgtccct 900



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>dbj|AK042121.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630060C16 product:hepatocyte growth
            factor, full insert sequence
          Length = 2757

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  tgaatgagactgatgtccct 206
            ||||||||||||||||||||
Sbjct: 1004 tgaatgagactgatgtccct 1023



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>gb|AC142129.4| Rattus norvegicus  BAC CH230-183M21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 215272

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    tccttgatgcttctggctct 368
              ||||||||||||||||||||
Sbjct: 109253 tccttgatgcttctggctct 109234



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>gb|AC072023.9| Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 112405

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   tctttcctcaagccagacac 304
             ||||||||||||||||||||
Sbjct: 13786 tctttcctcaagccagacac 13767



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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    ttgccatcattgctccaatc 413
              ||||||||||||||||||||
Sbjct: 318130 ttgccatcattgctccaatc 318149



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>emb|AL121774.5|CNS01DSF Human chromosome 14 DNA sequence BAC R-430G13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171030

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   gaggaaagagatgaatgaga 195
             ||||||||||||||||||||
Sbjct: 64880 gaggaaagagatgaatgaga 64899



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>emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chromosome 17, complete
              sequence
          Length = 212052

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    gacaaagcttggccactgtg 162
              ||||||||||||||||||||
Sbjct: 108632 gacaaagcttggccactgtg 108651



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>dbj|AB209415.1| Homo sapiens mRNA for spectrin, beta, erythrocytic (includes
            spherocytosis, clinical type I) variant protein
          Length = 7481

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 6113 gaggaaagagatgaatgaga 6132



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>emb|X84046.1|MMHGFSF M.musculus mRNA for hepatocyte growth factor/scatter factor
          Length = 2540

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 tgaatgagactgatgtccct 206
           ||||||||||||||||||||
Sbjct: 921 tgaatgagactgatgtccct 940



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>gb|M37884.1|HUMSPC1 Human muscle beta spectrin mRNA, 3' end
          Length = 4190

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 2808 gaggaaagagatgaatgaga 2827



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>gb|J05500.1|HUMSPTB Human beta-spectrin (SPTB) mRNA, complete cds
          Length = 6765

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gaggaaagagatgaatgaga 195
            ||||||||||||||||||||
Sbjct: 6065 gaggaaagagatgaatgaga 6084



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>dbj|D10213.1|MUSHGF2 Mouse mRNA for hepatocyte growth factor, complete cds
          Length = 2189

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 tgaatgagactgatgtccct 206
           ||||||||||||||||||||
Sbjct: 866 tgaatgagactgatgtccct 885



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>dbj|D10212.1|MUSHGF1 Mouse mRNA for hepatocyte growth factor, complete cds
          Length = 2204

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 tgaatgagactgatgtccct 206
           ||||||||||||||||||||
Sbjct: 881 tgaatgagactgatgtccct 900



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>gb|U00905.1|HSU00905 Human beta-spectrin (HSPTB1) gene, Humbspec.29 exon sequence
          Length = 301

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 gaggaaagagatgaatgaga 195
           ||||||||||||||||||||
Sbjct: 134 gaggaaagagatgaatgaga 153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,088,067
Number of Sequences: 3902068
Number of extensions: 4088067
Number of successful extensions: 77925
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77800
Number of HSP's gapped (non-prelim): 125
length of query: 497
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 475
effective length of database: 17,147,199,772
effective search space: 8144919891700
effective search space used: 8144919891700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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