ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalf18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 930 bits (469), Expect = 0.0 Identities = 485/488 (99%), Gaps = 2/488 (0%) Strand = Plus / Plus Query: 1 ctaccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggcta 59 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 282 ctaccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggcta 341 Query: 60 cctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggaca 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 cctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggaca 401 Query: 120 ggccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgta 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 ggccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgta 461 Query: 180 cggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 cggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgg 521 Query: 240 acgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggagg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 acgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggagg 581 Query: 300 cttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcg 359 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 582 cttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcc-tctacgtgctcg 640 Query: 360 acctcccatacttcttcaagtagattaataggtggcatgcatgtacgatgtctccagatc 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 acctcccatacttcttcaagtagattaataggtggcatgcatgtacgatgtctccagatc 700 Query: 420 atgccatctcttctcggtggttgcctgaacgagtcttctatgtataaatgaatttttaca 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 atgccatctcttctcggtggttgcctgaacgagtcttctatgtataaatgaatttttaca 760 Query: 480 tattcctc 487 |||||||| Sbjct: 761 tattcctc 768
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 13161001 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 13161060 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 13161061 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 13161120 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 13161121 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 13161180 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 13161181 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 13161240 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 13161241 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 13161300 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 13161301 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 13161359 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 13161360 cctcccgtacttcttcaagtagat 13161383
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 367 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 426 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 427 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 486 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 487 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 546 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 547 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 606 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 607 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 666 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 667 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 725 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 726 cctcccgtacttcttcaagtagat 749
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 317 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 376 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 377 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 436 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 437 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 496 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 497 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 556 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 557 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 616 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 617 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 675 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 676 cctcccgtacttcttcaagtagat 699
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 339 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 398 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 399 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 458 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 459 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 518 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 519 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 578 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 579 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 638 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 639 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 697 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 698 cctcccgtacttcttcaagtagat 721
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 367 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 426 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 427 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 486 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 487 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 546 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 547 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 606 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 607 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 666 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 667 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 725 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 726 cctcccgtacttcttcaagtagat 749
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 13115276 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 13115335 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 13115336 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 13115395 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 13115396 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 13115455 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 13115456 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 13115515 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 13115516 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 13115575 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 13115576 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 13115634 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 13115635 cctcccgtacttcttcaagtagat 13115658
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Minus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 169741 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 169682 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 169681 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 169622 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 169621 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 169562 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 169561 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 169502 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 169501 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 169442 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 169441 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 169383 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 169382 cctcccgtacttcttcaagtagat 169359
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 446 bits (225), Expect = e-122 Identities = 346/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 150204 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 150263 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 150264 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 150323 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 150324 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 150383 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 150384 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 150443 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 150444 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 150503 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 150504 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 150562 Query: 361 cctcccatacttcttcaagtagat 384 |||||| ||||||||||||||||| Sbjct: 150563 cctcccgtacttcttcaagtagat 150586
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 438 bits (221), Expect = e-120 Identities = 345/384 (89%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggctac 60 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 322 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 381 Query: 61 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 120 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 382 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 441 Query: 121 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 180 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 442 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 501 Query: 181 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 240 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 502 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 561 Query: 241 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 300 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 562 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 621 Query: 301 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcga 360 |||||||||||||| | ||||||| | ||||||| ||||||||| ||||||||||||| Sbjct: 622 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcc-tctacgtgctcga 680 Query: 361 cctcccatacttcttcaagtagat 384 ||||| ||||||||||||||||| Sbjct: 681 tctcccgtacttcttcaagtagat 704
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 367 bits (185), Expect = 2e-98 Identities = 336/384 (87%), Gaps = 2/384 (0%) Strand = Plus / Plus Query: 1 ctaccgcaccgccgtcagcccgctcctccgcggcatcgag-tcggcctcgcccatggcta 59 ||||||||||||||| |||||||| || || ||| ||||| |||||||||| || ||||| Sbjct: 1117 ctaccgcaccgccgtgagcccgctgctgcggggcgtcgaggtcggcctcgcgcacggcta 1176 Query: 60 cctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggaca 119 ||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||| || Sbjct: 1177 cctcctcgtggggcccttcgcgctcacgggcccgctccgcagcacgcccgtgcacggcca 1236 Query: 120 ggccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgta 179 ||||||| | ||||||||| ||| |||||| |||||||||||||||||||||||||||| Sbjct: 1237 ggccggcgcgctcggcgccgccggcctcgtcgccatcctcagcgtctgcctcaccatgta 1296 Query: 180 cggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgg 239 |||||||||||||||||||||||| || |||||||| ||||| |||||| |||||||| Sbjct: 1297 cggcgtcgcctccttcaacgagggggacccgtccacggcgcccacgctcacgctcaccgg 1356 Query: 240 acgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggagg 299 | |||||||||||||||||||| ||||||||||| || ||| | |||||||||| || Sbjct: 1357 caggaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggggg 1416 Query: 300 cttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcnttctacgtgctcg 359 |||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||| Sbjct: 1417 gttcttcttcggcggcatctccggcgtgctctgggcctactttctcc-tctacgtgctcg 1475 Query: 360 acctcccatacttcttcaagtaga 383 ||||||| |||||||||||||||| Sbjct: 1476 acctcccctacttcttcaagtaga 1499
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 58.0 bits (29), Expect = 3e-05 Identities = 51/56 (91%), Gaps = 2/56 (3%) Strand = Plus / Plus Query: 329 tctgggcatacttcctcnttctacgt-gctcgacctcccatacttcttcaagtaga 383 ||||||| ||||||||| | |||||| |||||||||||| |||||||||||||||| Sbjct: 55 tctgggcctacttcctcct-ctacgtagctcgacctcccgtacttcttcaagtaga 109
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 235 accggacgcaagaaggaggccgacaagctccagaccgccgaa 276 ||||| |||||||||||| ||||| ||||||| ||||||||| Sbjct: 142 accggccgcaagaaggagcccgaccagctccaaaccgccgaa 183
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 287 agttcaccggaggcttcttcttcggcggtgtatccgg 323 ||||||||||||| ||||||||||| ||||| ||||| Sbjct: 640 agttcaccggagggttcttcttcggtggtgtttccgg 676
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 453 tcttctatgtataaatgaattt 474 |||||||||||||||||||||| Sbjct: 5987780 tcttctatgtataaatgaattt 5987801
>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13, complete sequence Length = 137572 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 453 tcttctatgtataaatgaattt 474 |||||||||||||||||||||| Sbjct: 11177 tcttctatgtataaatgaattt 11198
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 453 tcttctatgtataaatgaattt 474 |||||||||||||||||||||| Sbjct: 131017 tcttctatgtataaatgaattt 131038
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 tataaatgaatttttacatat 482 ||||||||||||||||||||| Sbjct: 41394 tataaatgaatttttacatat 41414
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 cgcgctcactggcccgctccg 98 ||||||||||||||||||||| Sbjct: 4178355 cgcgctcactggcccgctccg 4178375
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 tataaatgaatttttacatat 482 ||||||||||||||||||||| Sbjct: 41394 tataaatgaatttttacatat 41414
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 gcgagccgtccaccgcgccgg 223 ||||||||||||||||||||| Sbjct: 2293 gcgagccgtccaccgcgccgg 2273
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 catcctcagcgtctgcctca 172 |||||||||||||||||||| Sbjct: 316 catcctcagcgtctgcctca 297
>ref|NM_117349.2| Arabidopsis thaliana unknown protein AT4G12800 mRNA, complete cds Length = 984 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 427 taccgtaccgccgtcaaccctctcctccgcgg 458
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctcgtcggccccttcgc 80 |||||||||||||||||||| Sbjct: 96245 ctcctcgtcggccccttcgc 96226
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctcgtcggccccttcgc 80 |||||||||||||||||||| Sbjct: 5291 ctcctcgtcggccccttcgc 5272
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 cttctatgtataaatgaattttta 477 |||||||| ||||||||||||||| Sbjct: 218069 cttctatggataaatgaattttta 218092
>gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome 19, complete sequence Length = 202236 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 cttctatgtataaatgaattttta 477 |||||||| ||||||||||||||| Sbjct: 11845 cttctatggataaatgaattttta 11868
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 catacttcttcaagtagatt 385 |||||||||||||||||||| Sbjct: 143184 catacttcttcaagtagatt 143165
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 gccgacaagctccagaccgccgaa 276 ||||||||||||||| |||||||| Sbjct: 1174948 gccgacaagctccagtccgccgaa 1174925
>emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35 Length = 199280 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 3134 taccgtaccgccgtcaaccctctcctccgcgg 3165
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 194241 taccgtaccgccgtcaaccctctcctccgcgg 194272
>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project) Length = 79375 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 52629 taccgtaccgccgtcaaccctctcctccgcgg 52660
>emb|AJ245867.1|ATH245867 Arabidopsis thaliana mRNA for photosystem I subunit XI precursor Length = 928 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 395 taccgtaccgccgtcaaccctctcctccgcgg 426
>gb|AY097427.1| Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 660 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 280 taccgtaccgccgtcaaccctctcctccgcgg 311
>gb|AF446350.1|AF446350 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 821 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 316 taccgtaccgccgtcaaccctctcctccgcgg 347
>gb|AY059949.1| Arabidopsis thaliana probable photosystem I chain XI precursor (At4g12800; T20K18.150) mRNA, complete cds Length = 853 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 322 taccgtaccgccgtcaaccctctcctccgcgg 353
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 acttcttcaagtagattaat 388 |||||||||||||||||||| Sbjct: 781165 acttcttcaagtagattaat 781146
>gb|AF428447.1|AF428447 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 842 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 316 taccgtaccgccgtcaaccctctcctccgcgg 347
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctcgtcggccccttcgc 80 |||||||||||||||||||| Sbjct: 18238032 ctcctcgtcggccccttcgc 18238013
>emb|BX826431.1|CNS0A4G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB26ZA06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 823 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 302 taccgtaccgccgtcaaccctctcctccgcgg 333
>emb|BX826834.1|CNS0A38Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 762 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 303 taccgtaccgccgtcaaccctctcctccgcgg 334
>emb|BX826723.1|CNS0A3CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZH08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 816 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 297 taccgtaccgccgtcaaccctctcctccgcgg 328
>emb|BX826537.1|CNS0A35T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 797 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 278 taccgtaccgccgtcaaccctctcctccgcgg 309
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ggcccgctccgcaacacgcc 107 |||||||||||||||||||| Sbjct: 892 ggcccgctccgcaacacgcc 911
>gb|AY087339.1| Arabidopsis thaliana clone 34400 mRNA, complete sequence Length = 944 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 taccgcaccgccgtcagcccgctcctccgcgg 33 ||||| |||||||||| ||| ||||||||||| Sbjct: 428 taccgtaccgccgtcaaccctctcctccgcgg 459
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctcgtcggccccttcgc 80 |||||||||||||||||||| Sbjct: 18396929 ctcctcgtcggccccttcgc 18396910
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 catcctcagcgtctgcctca 172 |||||||||||||||||||| Sbjct: 316 catcctcagcgtctgcctca 297
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 taggtggcatgcatgtacga 407 |||||||||||||||||||| Sbjct: 81369 taggtggcatgcatgtacga 81350
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 catacttcttcaagtagatt 385 |||||||||||||||||||| Sbjct: 121780 catacttcttcaagtagatt 121761 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,142,353 Number of Sequences: 3902068 Number of extensions: 3142353 Number of successful extensions: 60299 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59897 Number of HSP's gapped (non-prelim): 380 length of query: 497 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 475 effective length of database: 17,147,199,772 effective search space: 8144919891700 effective search space used: 8144919891700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
