Clone Name | baalf16 |
---|---|
Clone Library Name | barley_pub |
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 tctcgccatttccaccatatttcgcacc 228 |||| |||||||||||| |||||||||| Sbjct: 29956 tctctccatttccaccaaatttcgcacc 29983
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 tctcgccatttccaccatatttcgcacc 228 |||| |||||||||||| |||||||||| Sbjct: 158415 tctctccatttccaccaaatttcgcacc 158442
>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15 Length = 63598 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgcaacgcaacgcaacgcac 77 |||||||||||||||||||| Sbjct: 42560 cgcaacgcaacgcaacgcac 42541
>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete sequence Length = 186135 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 accatattgtatttccatgt 254 |||||||||||||||||||| Sbjct: 166688 accatattgtatttccatgt 166707
>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174645 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cgcaacgcaacgcaacgcac 77 |||||||||||||||||||| Sbjct: 26540 cgcaacgcaacgcaacgcac 26559
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 attctgtatttatcatacat 304 |||||||||||||||||||| Sbjct: 22849562 attctgtatttatcatacat 22849581
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 tctcgccatttccaccatatttcgcacc 228 |||| |||||||||||| |||||||||| Sbjct: 17868764 tctctccatttccaccaaatttcgcacc 17868791
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone BACR48M01, complete sequence Length = 188272 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgcaacgcaacgcaacgcac 77 |||||||||||||||||||| Sbjct: 77484 cgcaacgcaacgcaacgcac 77465
>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full insert sequence Length = 2833 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgcaacgcaacgcaacgcac 77 |||||||||||||||||||| Sbjct: 878 cgcaacgcaacgcaacgcac 859
>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the complete sequence Length = 290640 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cgcaacgcaacgcaacgcac 77 |||||||||||||||||||| Sbjct: 5008 cgcaacgcaacgcaacgcac 5027
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgcaacgcaacgcaacgcac 77 |||||||||||||||||||| Sbjct: 111024 cgcaacgcaacgcaacgcac 111005
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 tctcgccatttccaccatatttcgcacc 228 |||| |||||||||||| |||||||||| Sbjct: 17963081 tctctccatttccaccaaatttcgcacc 17963108
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 attctgtatttatcatacat 304 |||||||||||||||||||| Sbjct: 22777753 attctgtatttatcatacat 22777772
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 attctgtatttatcatacat 304 |||||||||||||||||||| Sbjct: 107282 attctgtatttatcatacat 107263 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,588,402 Number of Sequences: 3902068 Number of extensions: 1588402 Number of successful extensions: 28961 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28892 Number of HSP's gapped (non-prelim): 63 length of query: 332 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 310 effective length of database: 17,147,199,772 effective search space: 5315631929320 effective search space used: 5315631929320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)