ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalf16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
2gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
3emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clon... 40 4.4
4emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in ... 40 4.4
5gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell... 40 4.4
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
8gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, r... 40 4.4
9dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
10gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62... 40 4.4
11gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69... 40 4.4
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
14emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.4

>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0002A19, complete sequence
          Length = 139052

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 201   tctcgccatttccaccatatttcgcacc 228
             |||| |||||||||||| ||||||||||
Sbjct: 29956 tctctccatttccaccaaatttcgcacc 29983



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>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06,
              complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 201    tctcgccatttccaccatatttcgcacc 228
              |||| |||||||||||| ||||||||||
Sbjct: 158415 tctctccatttccaccaaatttcgcacc 158442



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>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15
          Length = 63598

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cgcaacgcaacgcaacgcac 77
             ||||||||||||||||||||
Sbjct: 42560 cgcaacgcaacgcaacgcac 42541



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>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete
              sequence
          Length = 186135

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    accatattgtatttccatgt 254
              ||||||||||||||||||||
Sbjct: 166688 accatattgtatttccatgt 166707



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>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174645

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cgcaacgcaacgcaacgcac 77
             ||||||||||||||||||||
Sbjct: 26540 cgcaacgcaacgcaacgcac 26559



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 285      attctgtatttatcatacat 304
                ||||||||||||||||||||
Sbjct: 22849562 attctgtatttatcatacat 22849581



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 201      tctcgccatttccaccatatttcgcacc 228
                |||| |||||||||||| ||||||||||
Sbjct: 17868764 tctctccatttccaccaaatttcgcacc 17868791



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>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone
             BACR48M01, complete sequence
          Length = 188272

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cgcaacgcaacgcaacgcac 77
             ||||||||||||||||||||
Sbjct: 77484 cgcaacgcaacgcaacgcac 77465



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>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full
           insert sequence
          Length = 2833

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  cgcaacgcaacgcaacgcac 77
           ||||||||||||||||||||
Sbjct: 878 cgcaacgcaacgcaacgcac 859



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>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the
            complete sequence
          Length = 290640

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   cgcaacgcaacgcaacgcac 77
            ||||||||||||||||||||
Sbjct: 5008 cgcaacgcaacgcaacgcac 5027



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>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete
              sequence
          Length = 598988

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     cgcaacgcaacgcaacgcac 77
              ||||||||||||||||||||
Sbjct: 111024 cgcaacgcaacgcaacgcac 111005



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 201      tctcgccatttccaccatatttcgcacc 228
                |||| |||||||||||| ||||||||||
Sbjct: 17963081 tctctccatttccaccaaatttcgcacc 17963108



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 285      attctgtatttatcatacat 304
                ||||||||||||||||||||
Sbjct: 22777753 attctgtatttatcatacat 22777772



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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    attctgtatttatcatacat 304
              ||||||||||||||||||||
Sbjct: 107282 attctgtatttatcatacat 107263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,588,402
Number of Sequences: 3902068
Number of extensions: 1588402
Number of successful extensions: 28961
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28892
Number of HSP's gapped (non-prelim): 63
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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