ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalf14 |
|---|---|
| Clone Library Name | barley_pub |
>HKT6_ORYSA (Q6H501) Probable cation transporter HKT6 (OsHKT6)| Length = 530 Score = 188 bits (477), Expect = 9e-48 Identities = 101/176 (57%), Positives = 119/176 (67%) Frame = +1 Query: 1 MNNSPVVHLKSLRTFXAFVATKLSYFAKSAQQSMKYSCQFICHTNPLFIQVTYFALISFA 180 MN+ VV K L+TF F A+K S F KSAQ+S+KYS QFI NPLF+ V YFALISFA Sbjct: 1 MNHCLVVSHKKLQTFRTFAASKFSSFTKSAQKSIKYSFQFIYQNNPLFVHVAYFALISFA 60 Query: 181 GYEALKVLNSQDKSNTLKDLXVLFXXXXXXXXXXXXXXEMEEFSSKQLWILAILMLIGXE 360 GY +LKVL +DKSNTLKDL VLF EME+FSS QLW+L ILMLIG E Sbjct: 61 GYGSLKVLKPRDKSNTLKDLDVLFTSVSASTVSSMATVEMEDFSSAQLWVLTILMLIGGE 120 Query: 361 VFTSILGLHFXRAKFNSXNSFNRRDQISHVDIESINVTNFDPTASHGTKDGASFSE 528 VFTS+LG+HF RA+F + S + RD +DIESI T F P ++ GTK SFSE Sbjct: 121 VFTSMLGIHFMRAEFGTKESVSTRDHSPCIDIESITSTKFGP-STQGTKVTVSFSE 175
>HKT4_ORYSA (Q7XPF8) Cation transporter HKT4 (OsHKT4)| Length = 552 Score = 103 bits (257), Expect = 3e-22 Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%) Frame = +1 Query: 13 PVVHLKSLRTFXAFVATKLSYFAKSAQQSMKYSCQF-ICHTNPLFIQVTYFALISFAGYE 189 P ++ + + F++ KL A+ S+K S F +C +NPL +Q+ YF +ISFAG+ Sbjct: 30 PRIYWEKAQHLCGFLSMKLISRARCVASSVKQSYSFLVCKSNPLVVQLVYFVIISFAGFL 89 Query: 190 ALKVLNSQDKSNTLKDLXVLFXXXXXXXXXXXXXXEMEEFSSKQLWILAILMLIGXEVFT 369 ALK L Q K KDL +LF EME+ S +QLW+L +LML+G EVFT Sbjct: 90 ALKNLKPQGKPGP-KDLDLLFTSVSTLTVSSMATVEMEDLSDRQLWVLILLMLMGGEVFT 148 Query: 370 SILGLHFXRAKFNSXNSFNRRDQISHVDIE 459 S+LGL+F A N + R +DIE Sbjct: 149 SMLGLYFNNANANRNENSQRSLPSISLDIE 178
>HKT8_ORYSA (Q3YAF4) Cation transporter HKT8 (OsHKT8)| Length = 554 Score = 75.1 bits (183), Expect = 1e-13 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 1/99 (1%) Frame = +1 Query: 118 FICHTNPLFIQVTYFALISFAGYEALKVLNSQDKSNTLK-DLXVLFXXXXXXXXXXXXXX 294 F+ H +P ++Q+ YF IS G+ LK L + DL ++F Sbjct: 21 FLFHAHPFWLQLLYFLFISLLGFLMLKALPMKTSMVPRPMDLDLIFTSVSATTVSSMVAV 80 Query: 295 EMEEFSSKQLWILAILMLIGXEVFTSILGLHFXRAKFNS 411 EME FS+ QL ++ +LML+G EVFTSILGL+F AK++S Sbjct: 81 EMESFSNSQLLLITLLMLLGGEVFTSILGLYFTNAKYSS 119
>HKT9_ORYSA (Q8L4K5) Probable cation transporter HKT9 (OsHKT9)| Length = 509 Score = 70.9 bits (172), Expect = 2e-12 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Frame = +1 Query: 64 KLSYFAKSAQQSMKYS---CQFIC-HTNPLFIQVTYFALISFAGYEALKVLNSQDKSNTL 231 +L F SA+ ++ S C+FI H +PL I ++YF +I G+ AL VL + Sbjct: 4 RLHIFVSSARHAINSSALICRFIAFHLSPLLIHLSYFLIIDVLGFVALVVLRPSNHKYNP 63 Query: 232 KDLXVLFXXXXXXXXXXXXXXEMEEFSSKQLWILAILMLIGXEVFTSILGLHFXRAKFNS 411 + + + F +ME+ SS Q+ +L +LM +G E+F S LGL +K N Sbjct: 64 RYIDMFFLSTSAVTVTGLATTQMEDLSSSQIAVLTLLMFLGSEMFLSFLGLVLESSKQNK 123 Query: 412 XNSFNRR 432 + NRR Sbjct: 124 HDPENRR 130
>HKT3_ORYSA (Q8L481) Probable cation transporter HKT3 (OsHKT3)| Length = 509 Score = 65.1 bits (157), Expect = 1e-10 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Frame = +1 Query: 79 AKSAQQSMKYSCQFIC-HTNPLFIQVTYFALISFAGYEALKVLNSQDKSNTLKDLXVLFX 255 A+ A S + C+FI H +PL I ++YF +I G+ +L VL + + + + F Sbjct: 12 ARHAINSSAFICRFIAYHLSPLLIHLSYFLIIDILGFVSLVVLRPSNHKYNPRYVDMFFL 71 Query: 256 XXXXXXXXXXXXXEMEEFSSKQLWILAILMLIGXEVFTSILGLHFXRAKFNSXNSFNRR 432 +ME+ SS Q+ IL +LM + ++F S LGL +K N + NRR Sbjct: 72 STSAVTVIGLATIQMEDLSSSQIAILTLLMFLDSKMFLSFLGLVLESSKQNKHDPENRR 130
>HKT2_ORYSA (Q93XI5) Cation transporter HKT2 (OsHKT2) (Po-OsHKT2)| Length = 530 Score = 61.2 bits (147), Expect = 2e-09 Identities = 40/111 (36%), Positives = 53/111 (47%) Frame = +1 Query: 127 HTNPLFIQVTYFALISFAGYEALKVLNSQDKSNTLKDLXVLFXXXXXXXXXXXXXXEMEE 306 H +P +IQ++YF LIS G L L + +LF EME Sbjct: 37 HVHPFWIQLSYFLLISILGSVLLMFLKPSSPEFKPGYIDMLFLSTSAMTVSGLSTIEMEV 96 Query: 307 FSSKQLWILAILMLIGXEVFTSILGLHFXRAKFNSXNSFNRRDQISHVDIE 459 SS Q+ +L +LML+G EVF S LGL R K F+ D++S V IE Sbjct: 97 LSSSQIVVLTLLMLVGGEVFVSFLGL-MLRLKHKHNPEFS-GDRVSSVPIE 145
>HKT1_ORYSA (Q6TPH3) Cation transporter HKT1 (OsHKT1) (Ni-OsHKT1) (Po-OsHKT1)| Length = 530 Score = 60.1 bits (144), Expect = 4e-09 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Frame = +1 Query: 52 FVATKLSYFAKSAQQSMKY---SCQFIC-HTNPLFIQVTYFALISFAGYEALKVLNSQDK 219 F+ KL F + + + + + +FI H +P +IQ++YF LIS G L L + Sbjct: 8 FIHNKLQSFGRIGRYFVNFVVLAHRFIALHIHPFWIQLSYFLLISILGSVLLMFLKPSNP 67 Query: 220 SNTLKDLXVLFXXXXXXXXXXXXXXEMEEFSSKQLWILAILMLIGXEVFTSILGLHFXRA 399 + +LF EME SS Q+ ++ +LML+G EVF S LGL R Sbjct: 68 EFRPGYIDMLFLSTSALTLSSLITIEMEVLSSSQIVVITLLMLLGGEVFVSFLGL-MLRL 126 Query: 400 KFNSXNSFNRRDQISHVDIE 459 F+ D++S V IE Sbjct: 127 NHKHNPEFS-GDKVSSVPIE 145
>HKT7_ORYSA (Q7XPF7) Probable cation transporter HKT7 (OsHKT7)| Length = 500 Score = 59.7 bits (143), Expect = 5e-09 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Frame = +1 Query: 139 LFIQVTYFALISFAGYEALKVLNSQDKSNTLKDLXVLFXXXXXXXXXXXXXXEMEEFSSK 318 L + V YF IS GY L VL ++ + + F EME FS+ Sbjct: 13 LSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFTAVSAATVSSMSTVEMEVFSNG 72 Query: 319 QLWILAILMLIGXEVFTSILGLHFXRAKFNSXNSFNRRDQISHVDIESINVTNFD---PT 489 QL +L +LML+G EVF S++GL +K S R SH D+ ++ D PT Sbjct: 73 QLVVLTVLMLLGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVALADIDGGDVENPT 132 Query: 490 AS 495 +S Sbjct: 133 SS 134
>HKT1_ARATH (Q84TI7) Sodium transporter HKT1 (AtHKT1)| Length = 506 Score = 52.8 bits (125), Expect = 6e-07 Identities = 29/82 (35%), Positives = 39/82 (47%) Frame = +1 Query: 142 FIQVTYFALISFAGYEALKVLNSQDKSNTLKDLXVLFXXXXXXXXXXXXXXEMEEFSSKQ 321 F+ YF SF G+ ALK+ + S D + F +ME FS+ Q Sbjct: 23 FLYFIYFLFFSFLGFLALKITKPRTTSRP-HDFDLFFTSVSAITVSSMSTVDMEVFSNTQ 81 Query: 322 LWILAILMLIGXEVFTSILGLH 387 L L ILM +G E+FTS L L+ Sbjct: 82 LIFLTILMFLGGEIFTSFLNLY 103
>RK35_SPIOL (P23326) 50S ribosomal protein L35, chloroplast precursor (CL35)| Length = 159 Score = 29.6 bits (65), Expect = 5.5 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = -3 Query: 368 VNTSLPISIKIAKIQSCLLENSSISTVAMLETVDAETEVNNTXKSFRVFDL-SWELRTFR 192 +N S SI +K+Q +L+N ISTV ++ V+ + SF VF ++++T + Sbjct: 45 LNLSSSSSISSSKVQPIVLKNKRISTV--------DSSVSTSSPSFTVFAAKGYKMKTHK 96 Query: 191 AS 186 AS Sbjct: 97 AS 98
>VPH1_YEAST (P32563) Vacuolar ATP synthase subunit a, vacuolar isoform (EC| 3.6.3.14) (V-ATPase a subunit) (Vacuolar proton pump a subunit) (V-ATPase 95 kDa subunit) (Vacuolar pH protein 1) Length = 839 Score = 28.9 bits (63), Expect = 9.3 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 12/100 (12%) Frame = -3 Query: 371 EVNTSLPISIKIAKIQSCL---LENSSISTVAMLETVDAETEVNNTXKSFRVFDLSWELR 201 E+N LP + + + + + + + T+A L V E ++N + +FD+++ R Sbjct: 403 EINAGLPTIVTFPFMFAIMFGDMGHGFLMTLAALSLVLNEKKINKMKRG-EIFDMAFTGR 461 Query: 200 ---------TFRASYPANEIKAK*VTWIKSGFVWQMNWQE 108 + + N+I +K +T KSG+ W +W++ Sbjct: 462 YIILLMGVFSMYTGFLYNDIFSKTMTIFKSGWKWPDHWKK 501
>RPOC1_CYACA (O19897) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 633 Score = 28.9 bits (63), Expect = 9.3 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = +1 Query: 7 NSPVVHLKSLRTFXAFVATKLSYFAKSAQQSMKYSCQFICHTNPLFIQVTYFALIS 174 ++PVVH+ L+ ++++ L AK +Q + ++ I H+ Q+ Y L++ Sbjct: 110 SAPVVHIWYLKGMPSYISVFLDMAAKEIEQVVYFNTYIITHSTAENKQIKYKQLLT 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,007,308 Number of Sequences: 219361 Number of extensions: 1174691 Number of successful extensions: 2546 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2544 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
