ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalf09 |
|---|---|
| Clone Library Name | barley_pub |
>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)| Length = 1258 Score = 33.9 bits (76), Expect = 0.37 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 8/84 (9%) Frame = +3 Query: 105 EPGGLDPNDGAADRKGSGDGTAEQEEVLGPGRTRTHSGQRTAQLRIPCGERRGHG----- 269 +PG ++P G +G G + L P T H G R Q ++ GH Sbjct: 1020 QPGFMEPQTGPMGVATAGFGLVQPRPPLEPSPTGRHRGVRAVQQQLAYARATGHAMAAMP 1079 Query: 270 ---ESAEXAQGGPRRNLDAHPVLP 332 E+AE G N+ + P P Sbjct: 1080 SSQETAEAVPKGAMGNMGSVPPQP 1103
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/77 (32%), Positives = 29/77 (37%) Frame = +3 Query: 93 DRPVEPGGLDPNDGAADRKGSGDGTAEQEEVLGPGRTRTHSGQRTAQLRIPCGERRGHGE 272 +RP G P G R G G Q G R GQR Q G+R+G G Sbjct: 215 ERPAPRPGGGPRPGGGPRPGGGPRPQGQGRP-GGQRDGQRDGQRDGQGNRG-GQRQGAGA 272 Query: 273 SAEXAQGGPRRNLDAHP 323 QGGPR + P Sbjct: 273 GGPRPQGGPRPQGGSRP 289
>SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 precursor| Length = 1222 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 6/51 (11%) Frame = +3 Query: 189 GPGRTRTHSGQRTAQLRI------PCGERRGHGESAEXAQGGPRRNLDAHP 323 GP G R ++++ P GERRG G A GG RR+ A P Sbjct: 86 GPELLPQQGGGRGGEMQVEAGGTSPAGERRGRGIPAPAKLGGARRSRRAQP 136
>HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72)| Length = 644 Score = 30.8 bits (68), Expect = 3.2 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%) Frame = +1 Query: 163 ARQNKKKCLDLAERARTLA-NVLPSYGYP----AVKDEDTERV----LRXLKEALDETLT 315 A K K D E AR A N L SY Y A + + E+V L +A++ET++ Sbjct: 519 AEAEKYKEEDEKEAARIAAKNGLESYAYSLKQTASEKQFEEKVDASKRESLNKAIEETIS 578 Query: 316 LIQSCQTVSICSRNRKAAELDGVNGKINDCIRDL 417 + + Q+ + K EL+G+ ND ++DL Sbjct: 579 WLDNNQSATTDEYEDKRKELEGI---ANDALKDL 609
>SYW_LACLA (Q9CJD1) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 341 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +3 Query: 12 LPLGGGEATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEEVLG 191 +P+G + R + S + D VEP G+ P + AA R DG A+ + LG Sbjct: 149 VPVGNDQKPMIEQTREIVRSFNNAYHTDVLVEPEGIYPENEAAGRLPGLDGNAKMSKSLG 208 Query: 192 PG 197 G Sbjct: 209 NG 210
>TONB_NEIMC (P95374) Protein tonB| Length = 278 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +3 Query: 123 PNDGAADRKGSGDGTAEQEEVLGP--GRTRTHSGQRTAQLRIPCGERRGHGESAEXAQGG 296 P++ A+ + A+ E+ G G R +G+ A + + G + HGE A ++G Sbjct: 137 PSEKPAEHPSNASAKADSEQGNGEETGTKRDGTGRGEAAVNVSVGVKGEHGEGAGSSKGN 196 Query: 297 PRR 305 P R Sbjct: 197 PLR 199
>IRK14_HUMAN (Q9UNX9) ATP-sensitive inward rectifier potassium channel 14| (Potassium channel, inwardly rectifying subfamily J member 14) (Inward rectifier K(+) channel Kir2.4) (IRK4) Length = 436 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/44 (45%), Positives = 23/44 (52%) Frame = +3 Query: 132 GAADRKGSGDGTAEQEEVLGPGRTRTHSGQRTAQLRIPCGERRG 263 GA D SGD A EE GPG R +G A ++ P G RRG Sbjct: 12 GALD---SGDSRAGDEEEAGPGLCR--NGWAPAPVQSPVGRRRG 50
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 30.4 bits (67), Expect = 4.1 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = +3 Query: 123 PNDGAADRKGS---GDGTAEQEEVLGPGRTRTHSGQRTAQLRIPCGERRGHGESAEXAQG 293 P GA R G+ G+ + +G R R+ GQR+ R GER ++ ++G Sbjct: 199 PRPGAGRRTGAPRPGNNPFASSQGMGQSRHRSEGGQRSGGSRSGQGERMPRPGGSQGSRG 258 Query: 294 G---PRRN 308 G PR N Sbjct: 259 GSGMPRPN 266
>HSLU_BRUSU (Q8FY12) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 434 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Frame = +3 Query: 33 ATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEEVLGP---GRT 203 AT S R+ + + E+D E + V G PN G+ G ++LG GRT Sbjct: 143 ATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPGANIGVLNISDMLGKAMGGRT 202 Query: 204 RT 209 +T Sbjct: 203 KT 204
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +3 Query: 99 PVEPGGLDPNDGAADRKGSGDGTAEQEEVLGPGRTRTHSGQRTAQLRIPCGERRGHGESA 278 P P G D G+ G+ E+ E PG + + Q ++ P GER GES Sbjct: 1187 PAGPNGADGPQGSPGGVGNLGPPGEKGE---PGESGSPGVQGEPGVKGPRGERGEKGESG 1243 Query: 279 EXAQGGP 299 + + GP Sbjct: 1244 QAGEAGP 1250
>PUR1_PYRHO (O57979) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 449 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +3 Query: 210 HSGQRTAQLRIPCGERR---GHGESAEXAQGGPRRNLDAHPVLPDCKY 344 H GQ A + + G+ R GHG +E +GG R L+ +PV+ +Y Sbjct: 33 HRGQEGAGISVWDGDIRTVKGHGLVSEVFKGGSIRRLNGNPVIGHVRY 80
>UVRA_RICPR (Q9ZCC3) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 953 Score = 30.0 bits (66), Expect = 5.4 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Frame = +3 Query: 57 LVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAE-----QEEVLGPGRTRTHSGQ 221 +VEH E E D ++ G P G + +G AE +E + G R SG+ Sbjct: 555 VVEHDEETMYEADHIIDIG---PGAGIHGGRVIAEGNAEKIKHFEESITG----RYLSGR 607 Query: 222 RTAQLRIPCGERRGHGESAEXAQGGPRRNLD 314 +T +++P R GH A G NLD Sbjct: 608 QT--IKVPSETRVGHDNRAIELLGAVSNNLD 636
>VE2_HPV08 (P06422) Regulatory protein E2| Length = 498 Score = 25.0 bits (53), Expect(2) = 6.9 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 247 AVKDEDTERVLRXLKEALDETLTLIQSCQTVSICSRNRKAAELDGV 384 +V + T R+ R L EA+D + L++ C RNR G+ Sbjct: 396 SVSAKHTGRLGRLLDEAIDPPVILVRGEANTLKCFRNRARVRYRGL 441 Score = 23.1 bits (48), Expect(2) = 6.9 Identities = 15/52 (28%), Positives = 19/52 (36%) Frame = +3 Query: 27 GEATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEE 182 G ATA S RR S R R + R+G G G+ + E Sbjct: 311 GRATATSRRRAGRGSPRRRRSTSRSPSTNTFKRSQRGGGRRGRGRGSRGRRE 362
>MURG_NEIG1 (Q5F6L8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 355 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 115 GLILTMVQLIAKEAET--ARQNKKKCLDLAERARTLA 219 GL+L QL A++ N++KCL AE ARTLA Sbjct: 302 GLLLPQTQLTAEKLAEILGSLNREKCLKWAENARTLA 338
>COT1_HUMAN (P10589) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)| (V-ERBA-related protein EAR-3) Length = 423 Score = 29.6 bits (65), Expect = 7.0 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = +3 Query: 108 PGGLDPNDGAADRKGSGDGTAEQEEVLGPGRTRTHSGQRTAQLRIPCGERRGHGESAEXA 287 PGG PN A +G G G EQ++ G G H+ Q Q P G + + Sbjct: 20 PGG--PNPAAQAARGGGGGAGEQQQQAGSG--APHTPQTPGQPGAPATP----GTAGDKG 71 Query: 288 QGGP 299 QG P Sbjct: 72 QGPP 75
>SYW_STRP8 (P67598) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 340 Score = 29.6 bits (65), Expect = 7.0 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 9 LLPLGGGEATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEEVL 188 L+P+G + R + S D VEP G+ P + A R DG A+ + L Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDGNAKMSKSL 207 Query: 189 GPG 197 G G Sbjct: 208 GNG 210
>SYW_STRP6 (Q5X9A2) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 340 Score = 29.6 bits (65), Expect = 7.0 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 9 LLPLGGGEATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEEVL 188 L+P+G + R + S D VEP G+ P + A R DG A+ + L Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDGNAKMSKSL 207 Query: 189 GPG 197 G G Sbjct: 208 GNG 210
>SYW_STRP3 (P67597) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 340 Score = 29.6 bits (65), Expect = 7.0 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 9 LLPLGGGEATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEEVL 188 L+P+G + R + S D VEP G+ P + A R DG A+ + L Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDGNAKMSKSL 207 Query: 189 GPG 197 G G Sbjct: 208 GNG 210
>SYW_STRP1 (Q99XH4) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 340 Score = 29.6 bits (65), Expect = 7.0 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 9 LLPLGGGEATAQSHRRLVEHSELDRLEXDRPVEPGGLDPNDGAADRKGSGDGTAEQEEVL 188 L+P+G + R + S D VEP G+ P + A R DG A+ + L Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDGNAKMSKSL 207 Query: 189 GPG 197 G G Sbjct: 208 GNG 210
>MURG_NEIMB (Q9K0Y2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 355 Score = 29.3 bits (64), Expect = 9.2 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 115 GLILTMVQLIAKEAET--ARQNKKKCLDLAERARTLA 219 GL+L QL A++ N++KCL AE ARTLA Sbjct: 302 GLLLPQTQLTAEKLAEILGGLNREKCLKWAENARTLA 338
>MURG_NEIMA (Q9JSZ7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 355 Score = 29.3 bits (64), Expect = 9.2 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 115 GLILTMVQLIAKEAET--ARQNKKKCLDLAERARTLA 219 GL+L QL A++ N++KCL AE ARTLA Sbjct: 302 GLLLPQTQLTAEKLAEILGGLNREKCLKWAENARTLA 338
>NADB_CAUCR (Q9A4C3) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 511 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 249 GERRGHGESAEXAQGGPRRNLDAHPVLPD 335 G R G +AE A GGP +L+ P LPD Sbjct: 389 GARAGRAAAAEGATGGPPVSLEPLPDLPD 417
>TYSY_PSEAE (Q9I6F1) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 264 Score = 29.3 bits (64), Expect = 9.2 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = -2 Query: 464 ELAAAT*FVRAFLMKLRSLMQSLIFPLTPSNSAAFRLREHILTVWQDW 321 +LAA V L+S++ L++ L S + A+ L+EH +++W +W Sbjct: 37 DLAAGFPLVTTKKCHLKSIVHELLWFLKGSTNIAY-LKEHGVSIWDEW 83
>POLK_MOUSE (Q9QUG2) DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP)| Length = 852 Score = 29.3 bits (64), Expect = 9.2 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Frame = +1 Query: 238 GYPAVKDEDTERVLRXLKEALDETLTLIQSCQTV--SICSRNRKAAELDGVNGKINDCIR 411 G A++ + + L+ L E+ ET CQT +C R ++ L+ N +++C+ Sbjct: 588 GQQALQILEPSQALKKLSESF-ETSENSNDCQTFICPVCFREQEGVSLEAFNEHVDECLD 646 Query: 412 DLNFIRNARTNQVAAASS 465 + N++ + + ASS Sbjct: 647 GPSTSENSKISCYSHASS 664 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,114,606 Number of Sequences: 219361 Number of extensions: 1282788 Number of successful extensions: 4832 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4677 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4825 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
