Clone Name | baalf07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463026.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.2 mRNA Length = 1115 Score = 355 bits (179), Expect = 5e-95 Identities = 243/265 (91%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 422 ctgcccaacaatgactgctggcccaaagtatgagtacagatgggctgatggtgtacagat 481 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 |||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 482 aaagaagccgatagaagtatcagcaccaaaatatgtggagtacctaatggactggattga 541 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 |||||| ||||| ||||||| ||||||| || ||||||||||||||||| || || || Sbjct: 542 aggccaacttgatgatgaatctatatttccccaaaagcttggcacaccattcccgccaaa 601 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 602 cttcaaggaggttgtaaagacaattttcaagcgcttgtttcgtgtttatgcccacatata 661 Query: 241 ccattcccattttcagaagattgtc 265 || ||||||||||||||||||||| Sbjct: 662 tcactcccattttcagaagattgtc 686
>dbj|AK104547.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C06, full insert sequence Length = 1065 Score = 355 bits (179), Expect = 5e-95 Identities = 243/265 (91%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 362 ctgcccaacaatgactgctggcccaaagtatgagtacagatgggctgatggtgtacagat 421 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 |||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 422 aaagaagccgatagaagtatcagcaccaaaatatgtggagtacctaatggactggattga 481 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 |||||| ||||| ||||||| ||||||| || ||||||||||||||||| || || || Sbjct: 482 aggccaacttgatgatgaatctatatttccccaaaagcttggcacaccattcccgccaaa 541 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 542 cttcaaggaggttgtaaagacaattttcaagcgcttgtttcgtgtttatgcccacatata 601 Query: 241 ccattcccattttcagaagattgtc 265 || ||||||||||||||||||||| Sbjct: 602 tcactcccattttcagaagattgtc 626
>dbj|AK099558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034B14, full insert sequence Length = 1071 Score = 355 bits (179), Expect = 5e-95 Identities = 243/265 (91%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 379 ctgcccaacaatgactgctggcccaaagtatgagtacagatgggctgatggtgtacagat 438 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 |||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 439 aaagaagccgatagaagtatcagcaccaaaatatgtggagtacctaatggactggattga 498 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 |||||| ||||| ||||||| ||||||| || ||||||||||||||||| || || || Sbjct: 499 aggccaacttgatgatgaatctatatttccccaaaagcttggcacaccattcccgccaaa 558 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 559 cttcaaggaggttgtaaagacaattttcaagcgcttgtttcgtgtttatgcccacatata 618 Query: 241 ccattcccattttcagaagattgtc 265 || ||||||||||||||||||||| Sbjct: 619 tcactcccattttcagaagattgtc 643
>dbj|AK098953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058M06, full insert sequence Length = 1039 Score = 355 bits (179), Expect = 5e-95 Identities = 243/265 (91%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 372 ctgcccaacaatgactgctggcccaaagtatgagtacagatgggctgatggtgtacagat 431 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 |||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 432 aaagaagccgatagaagtatcagcaccaaaatatgtggagtacctaatggactggattga 491 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 |||||| ||||| ||||||| ||||||| || ||||||||||||||||| || || || Sbjct: 492 aggccaacttgatgatgaatctatatttccccaaaagcttggcacaccattcccgccaaa 551 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 552 cttcaaggaggttgtaaagacaattttcaagcgcttgtttcgtgtttatgcccacatata 611 Query: 241 ccattcccattttcagaagattgtc 265 || ||||||||||||||||||||| Sbjct: 612 tcactcccattttcagaagattgtc 636
>dbj|AK061735.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D08, full insert sequence Length = 1072 Score = 355 bits (179), Expect = 5e-95 Identities = 243/265 (91%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 366 ctgcccaacaatgactgctggcccaaagtatgagtacagatgggctgatggtgtacagat 425 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 |||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 426 aaagaagccgatagaagtatcagcaccaaaatatgtggagtacctaatggactggattga 485 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 |||||| ||||| ||||||| ||||||| || ||||||||||||||||| || || || Sbjct: 486 aggccaacttgatgatgaatctatatttccccaaaagcttggcacaccattcccgccaaa 545 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 546 cttcaaggaggttgtaaagacaattttcaagcgcttgtttcgtgtttatgcccacatata 605 Query: 241 ccattcccattttcagaagattgtc 265 || ||||||||||||||||||||| Sbjct: 606 tcactcccattttcagaagattgtc 630
>gb|AY104572.1| Zea mays PCO087857 mRNA sequence Length = 1332 Score = 305 bits (154), Expect = 4e-80 Identities = 236/264 (89%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 ||||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||| Sbjct: 465 ctgcccaacaatgacagctggcccaaagtatgagtacagatgggctgatggtgtgcagat 524 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 ||||||||||||||| || |||||||||||||| ||||||| || ||||| |||||||| Sbjct: 525 aaagaaacccatagaggtatcagcaccaaaatatatggagtatctgatggattggattga 584 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 ||||||||||||| |||||||| |||||||||| || |||||||||||||| ||||| || Sbjct: 585 aggccagcttgacgatgaatccatatttcctcaaaaacttggcacaccattcccaccaaa 644 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| || | || || || | ||||||||||||||||||||||||||||||||| Sbjct: 645 cttcaaggaagtagtgaagacgatattcaagcgcttgtttcgtgtttatgcccacatata 704 Query: 241 ccattcccattttcagaagattgt 264 ||| || ||||| ||||||||||| Sbjct: 705 ccactcgcatttccagaagattgt 728
>gb|BT016208.1| Zea mays clone Contig41 mRNA sequence Length = 1041 Score = 297 bits (150), Expect = 9e-78 Identities = 235/264 (89%) Strand = Plus / Minus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||| |||||||| || |||||||||||||||||| |||||||||||||||| ||||| Sbjct: 636 ctgcccgacaatgacagctggcccaaagtatgagtacagatgggctgatggtgtgcagat 577 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 ||||||||||||||| || |||||||||||||| ||||||| || ||||| |||||||| Sbjct: 576 aaagaaacccatagaggtatcagcaccaaaatatatggagtatctgatggattggattga 517 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 ||||||||||||| |||||||| |||||||||| || |||||||||||||| ||||| || Sbjct: 516 aggccagcttgacgatgaatccatatttcctcaaaaacttggcacaccattcccaccaaa 457 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 ||||||||| || | || || || | ||||||||||||||||||||||||||||||||| Sbjct: 456 cttcaaggaagtagtgaagacgatattcaagcgcttgtttcgtgtttatgcccacatata 397 Query: 241 ccattcccattttcagaagattgt 264 ||| || ||||| ||||||||||| Sbjct: 396 ccactcgcatttccagaagattgt 373
>gb|BT017985.1| Zea mays clone EL01N0525F07.c mRNA sequence Length = 1171 Score = 236 bits (119), Expect = 3e-59 Identities = 204/233 (87%) Strand = Plus / Plus Query: 32 gagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaaa 91 |||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct: 570 gagtacagatgggctgatggtgtgcagataaagaaacccatagaggtatcagcaccaaaa 629 Query: 92 tacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatttcct 151 || |||||||| || ||||| |||||||||||||||||||| |||||||| |||||||| Sbjct: 630 tatgtggagtatctgatggattggattgaaggccagcttgatgatgaatccatatttcct 689 Query: 152 cagaagcttggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaag 211 || || |||||||| ||||||||||| ||||||||||| || | ||| ||||| | |||| Sbjct: 690 caaaaacttggcacgccatttccaccgaacttcaaggaagtagtaaatacaatattcaag 749 Query: 212 cgcttgtttcgtgtttatgcccacatataccattcccattttcagaagattgt 264 || |||||||| || |||||||| | ||||| |||||||| ||||||||||| Sbjct: 750 cgattgtttcgggtctatgcccatacctaccactcccatttccagaagattgt 802
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence Length = 167239 Score = 172 bits (87), Expect = 4e-40 Identities = 123/135 (91%) Strand = Plus / Minus Query: 28 gtatgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcacc 87 |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 166054 gtatgagtacagatgggctgatggtgtacagataaagaagccgatagaagtatcagcacc 165995 Query: 88 aaaatacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatt 147 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct: 165994 aaaatatgtggagtacctaatggactggattgaaggccaacttgatgatgaatctatatt 165935 Query: 148 tcctcagaagcttgg 162 ||| || |||||||| Sbjct: 165934 tccccaaaagcttgg 165920 Score = 141 bits (71), Expect = 1e-30 Identities = 96/105 (91%) Strand = Plus / Minus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 165789 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 165730 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 165729 cgtgtttatgcccacatatatcactcccattttcagaagattgtc 165685 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1 ctgcccaacaatgactgcaggcccaaagta 30 |||||||||||||||||| ||||||||||| Sbjct: 166643 ctgcccaacaatgactgctggcccaaagta 166614
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 172 bits (87), Expect = 4e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 28 gtatgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcacc 87 |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 20919224 gtatgagtacagatgggctgatggtgtacagataaagaagccgatagaagtatcagcacc 20919283 Query: 88 aaaatacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatt 147 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct: 20919284 aaaatatgtggagtacctaatggactggattgaaggccaacttgatgatgaatctatatt 20919343 Query: 148 tcctcagaagcttgg 162 ||| || |||||||| Sbjct: 20919344 tccccaaaagcttgg 20919358 Score = 141 bits (71), Expect = 1e-30 Identities = 96/105 (91%) Strand = Plus / Plus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 20919489 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 20919548 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 20919549 cgtgtttatgcccacatatatcactcccattttcagaagattgtc 20919593 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagta 30 |||||||||||||||||| ||||||||||| Sbjct: 20918635 ctgcccaacaatgactgctggcccaaagta 20918664 Score = 44.1 bits (22), Expect = 0.22 Identities = 49/58 (84%) Strand = Plus / Minus Query: 75 aagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggccagcttga 132 ||||||| || ||||| |||||||||||||| ||||| ||| | || |||||||||| Sbjct: 16669837 aagtgtctgctccaaagtacgtggagtacctgatggattgggtggagagccagcttga 16669780
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 172 bits (87), Expect = 4e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 28 gtatgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcacc 87 |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 20912253 gtatgagtacagatgggctgatggtgtacagataaagaagccgatagaagtatcagcacc 20912312 Query: 88 aaaatacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatt 147 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct: 20912313 aaaatatgtggagtacctaatggactggattgaaggccaacttgatgatgaatctatatt 20912372 Query: 148 tcctcagaagcttgg 162 ||| || |||||||| Sbjct: 20912373 tccccaaaagcttgg 20912387 Score = 141 bits (71), Expect = 1e-30 Identities = 96/105 (91%) Strand = Plus / Plus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 20912518 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 20912577 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 20912578 cgtgtttatgcccacatatatcactcccattttcagaagattgtc 20912622 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagta 30 |||||||||||||||||| ||||||||||| Sbjct: 20911664 ctgcccaacaatgactgctggcccaaagta 20911693 Score = 44.1 bits (22), Expect = 0.22 Identities = 49/58 (84%) Strand = Plus / Minus Query: 75 aagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggccagcttga 132 ||||||| || ||||| |||||||||||||| ||||| ||| | || |||||||||| Sbjct: 16663470 aagtgtctgctccaaagtacgtggagtacctgatggattgggtggagagccagcttga 16663413
>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence Length = 167323 Score = 172 bits (87), Expect = 4e-40 Identities = 123/135 (91%) Strand = Plus / Minus Query: 28 gtatgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcacc 87 |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 3699 gtatgagtacagatgggctgatggtgtacagataaagaagccgatagaagtatcagcacc 3640 Query: 88 aaaatacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatt 147 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct: 3639 aaaatatgtggagtacctaatggactggattgaaggccaacttgatgatgaatctatatt 3580 Query: 148 tcctcagaagcttgg 162 ||| || |||||||| Sbjct: 3579 tccccaaaagcttgg 3565 Score = 141 bits (71), Expect = 1e-30 Identities = 96/105 (91%) Strand = Plus / Minus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 3434 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 3375 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 3374 cgtgtttatgcccacatatatcactcccattttcagaagattgtc 3330 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1 ctgcccaacaatgactgcaggcccaaagta 30 |||||||||||||||||| ||||||||||| Sbjct: 4288 ctgcccaacaatgactgctggcccaaagta 4259
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 163 bits (82), Expect = 3e-37 Identities = 121/134 (90%) Strand = Plus / Plus Query: 29 tatgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcacca 88 ||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 3720480 tatgagtacagatgggctgatggtgtacagataaagaagccgatagaagtgtcagcgcca 3720539 Query: 89 aaatacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttattt 148 ||||| ||||||| |||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 3720540 aaatatgtggagttcctaatggactggattgaaggccaacttgatgatgaatctatattt 3720599 Query: 149 cctcagaagcttgg 162 || || |||||||| Sbjct: 3720600 ccccaaaagcttgg 3720613 Score = 125 bits (63), Expect = 8e-26 Identities = 94/105 (89%) Strand = Plus / Plus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 3720747 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 3720806 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||| |||||||||||||||| Sbjct: 3720807 cgtgtttatgcccacatatatcactccagttttcagaagattgtc 3720851
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 163 bits (82), Expect = 3e-37 Identities = 121/134 (90%) Strand = Plus / Plus Query: 29 tatgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcacca 88 ||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 43977 tatgagtacagatgggctgatggtgtacagataaagaagccgatagaagtgtcagcgcca 44036 Query: 89 aaatacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttattt 148 ||||| ||||||| |||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 44037 aaatatgtggagttcctaatggactggattgaaggccaacttgatgatgaatctatattt 44096 Query: 149 cctcagaagcttgg 162 || || |||||||| Sbjct: 44097 ccccaaaagcttgg 44110 Score = 125 bits (63), Expect = 8e-26 Identities = 94/105 (89%) Strand = Plus / Plus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 44244 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 44303 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||| |||||||||||||||| Sbjct: 44304 cgtgtttatgcccacatatatcactccagttttcagaagattgtc 44348
>ref|XM_480217.1| Oryza sativa (japonica cultivar-group), mRNA Length = 426 Score = 125 bits (63), Expect = 8e-26 Identities = 94/105 (89%) Strand = Plus / Plus Query: 161 ggcacaccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgttt 220 ||||||||||| || || ||||||||||| |||| ||| ||||||| ||||||||||||| Sbjct: 190 ggcacaccattcccgccaaacttcaaggaggttgtaaagacaattttcaagcgcttgttt 249 Query: 221 cgtgtttatgcccacatataccattcccattttcagaagattgtc 265 |||||||||||||||||||| || ||| |||||||||||||||| Sbjct: 250 cgtgtttatgcccacatatatcactccagttttcagaagattgtc 294 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 107 atggactggattgaaggccagcttgacaatgaatccttatttcctcagaagcttgg 162 |||||||||||||||||||| ||||| ||||||| ||||||| || |||||||| Sbjct: 1 atggactggattgaaggccaacttgatgatgaatctatatttccccaaaagcttgg 56
>gb|BT014231.1| Lycopersicon esculentum clone 133430F, mRNA sequence Length = 959 Score = 115 bits (58), Expect = 7e-23 Identities = 212/264 (80%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagat 60 |||||| ||||||||||||||||| || || |||||| | ||||||||||| ||||| || Sbjct: 396 ctgccctacaatgactgcaggccccaaatacgagtacaggtgggctgatggagtacaaat 455 Query: 61 aaagaaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattga 120 ||||| || || ||||| || || ||||| || || || || | |||||||||||||| Sbjct: 456 taagaagcctattgaagtttcggctccaaagtatgttgaatatttgatggactggattga 515 Query: 121 aggccagcttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaa 180 | || | || ||||||| |||||||||| | |||||| | || ||||||||||| Sbjct: 516 aactcaattggatgatgaatctctatttcctcaaaggcttggtgcgccgtttccacccaa 575 Query: 181 cttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatata 240 |||||||||||||| || ||||||| ||||| | |||||||| ||||| || || || Sbjct: 576 cttcaaggatgttgtcaagacaatttttaagcgtctctttcgtgtgtatgcacatattta 635 Query: 241 ccattcccattttcagaagattgt 264 ||||||||||||||||| ||||| Sbjct: 636 tcattcccattttcagaaaattgt 659
>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA Length = 3459 Score = 107 bits (54), Expect = 2e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 5 ccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaag 64 ||||||||| | || || || |||| ||||||| ||||||||||||| | ||||| ||| Sbjct: 3064 ccaacaatgtcagctggacctaagtttgagtacagatgggctgatggaattcagatcaag 3123 Query: 65 aaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggc 124 |||||||| || || || ||||| ||||| || ||||| || |||||||||||||| | | Sbjct: 3124 aaacccatcgaggtttcggcaccgaaatatgtcgagtatctgatggactggattgaggtc 3183 Query: 125 cagcttgacaatgaatccttatttcctcagaagcttgg 162 ||||||||| |||||||| | ||||||||||| ||||| Sbjct: 3184 cagcttgacgatgaatccatttttcctcagaaacttgg 3221
>dbj|AK120220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041G09, full insert sequence Length = 1123 Score = 107 bits (54), Expect = 2e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 5 ccaacaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaag 64 ||||||||| | || || || |||| ||||||| ||||||||||||| | ||||| ||| Sbjct: 492 ccaacaatgtcagctggacctaagtttgagtacagatgggctgatggaattcagatcaag 551 Query: 65 aaacccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggc 124 |||||||| || || || ||||| ||||| || ||||| || |||||||||||||| | | Sbjct: 552 aaacccatcgaggtttcggcaccgaaatatgtcgagtatctgatggactggattgaggtc 611 Query: 125 cagcttgacaatgaatccttatttcctcagaagcttgg 162 ||||||||| |||||||| | ||||||||||| ||||| Sbjct: 612 cagcttgacgatgaatccatttttcctcagaaacttgg 649
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 31 tgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaa 90 ||||||| ||||||||||||| | ||||| ||||||||||| || || || ||||| || Sbjct: 71818 tgagtacagatgggctgatggaattcagatcaagaaacccatcgaggtttcggcaccgaa 71759 Query: 91 atacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatttcc 150 ||| || ||||| || |||||||||||||| | |||||||||| |||||||| | ||||| Sbjct: 71758 atatgtcgagtatctgatggactggattgaggtccagcttgacgatgaatccatttttcc 71699 Query: 151 tcagaagcttgg 162 |||||| ||||| Sbjct: 71698 tcagaaacttgg 71687 Score = 42.1 bits (21), Expect = 0.87 Identities = 48/57 (84%) Strand = Plus / Minus Query: 208 caagcgcttgtttcgtgtttatgcccacatataccattcccattttcagaagattgt 264 ||||||| | || ||||||||||| || || ||||| | ||||||||||||||||| Sbjct: 71527 caagcgccttttccgtgtttatgctcatatttaccacacacattttcagaagattgt 71471
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Plus Query: 31 tgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaa 90 ||||||| ||||||||||||| | ||||| ||||||||||| || || || ||||| || Sbjct: 145470 tgagtacagatgggctgatggaattcagatcaagaaacccatcgaggtttcggcaccgaa 145529 Query: 91 atacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatttcc 150 ||| || ||||| || |||||||||||||| | |||||||||| |||||||| | ||||| Sbjct: 145530 atatgtcgagtatctgatggactggattgaggtccagcttgacgatgaatccatttttcc 145589 Query: 151 tcagaagcttgg 162 |||||| ||||| Sbjct: 145590 tcagaaacttgg 145601 Score = 42.1 bits (21), Expect = 0.87 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 caagcgcttgtttcgtgtttatgcccacatataccattcccattttcagaagattgt 264 ||||||| | || ||||||||||| || || ||||| | ||||||||||||||||| Sbjct: 145761 caagcgccttttccgtgtttatgctcatatttaccacacacattttcagaagattgt 145817
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 31 tgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaa 90 ||||||| ||||||||||||| | ||||| ||||||||||| || || || ||||| || Sbjct: 12775379 tgagtacagatgggctgatggaattcagatcaagaaacccatcgaggtttcggcaccgaa 12775320 Query: 91 atacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatttcc 150 ||| || ||||| || |||||||||||||| | |||||||||| |||||||| | ||||| Sbjct: 12775319 atatgtcgagtatctgatggactggattgaggtccagcttgacgatgaatccatttttcc 12775260 Query: 151 tcagaagcttgg 162 |||||| ||||| Sbjct: 12775259 tcagaaacttgg 12775248 Score = 42.1 bits (21), Expect = 0.87 Identities = 48/57 (84%) Strand = Plus / Minus Query: 208 caagcgcttgtttcgtgtttatgcccacatataccattcccattttcagaagattgt 264 ||||||| | || ||||||||||| || || ||||| | ||||||||||||||||| Sbjct: 12775088 caagcgccttttccgtgtttatgctcatatttaccacacacattttcagaagattgt 12775032
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 103 bits (52), Expect = 3e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 31 tgagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaa 90 ||||||| ||||||||||||| | ||||| ||||||||||| || || || ||||| || Sbjct: 12782720 tgagtacagatgggctgatggaattcagatcaagaaacccatcgaggtttcggcaccgaa 12782661 Query: 91 atacgtggagtacctaatggactggattgaaggccagcttgacaatgaatccttatttcc 150 ||| || ||||| || |||||||||||||| | |||||||||| |||||||| | ||||| Sbjct: 12782660 atatgtcgagtatctgatggactggattgaggtccagcttgacgatgaatccatttttcc 12782601 Query: 151 tcagaagcttgg 162 |||||| ||||| Sbjct: 12782600 tcagaaacttgg 12782589 Score = 42.1 bits (21), Expect = 0.87 Identities = 48/57 (84%) Strand = Plus / Minus Query: 208 caagcgcttgtttcgtgtttatgcccacatataccattcccattttcagaagattgt 264 ||||||| | || ||||||||||| || || ||||| | ||||||||||||||||| Sbjct: 12782429 caagcgccttttccgtgtttatgctcatatttaccacacacattttcagaagattgt 12782373
>emb|AJ299394.1|CAR299394 Cicer arietinum partial mRNA for hypothetical protein (ORF), clone Can173-1 Length = 875 Score = 85.7 bits (43), Expect = 6e-14 Identities = 203/257 (78%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 |||||| ||||||| || ||||||||||| ||||||| || || || || || || ||| Sbjct: 191 acaatgtctgcaggacccaagtatgagtatagatgggcagacggcgtgcaaatcaaaaaa 250 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggccag 127 || || || || || || |||||||| || || || || ||||||||||||||| ||| Sbjct: 251 cctattgaggtatctgctccaaaatatgtagaatatctgatggactggattgaatcacag 310 Query: 128 cttgacaatgaatccttatttcctcagaagcttggcacaccatttccacccaacttcaag 187 ||||| |||||||| |||| ||||||| |||||| | |||||||| |||||||| ||| Sbjct: 311 cttgatgatgaatccatattccctcagaggcttggttctccatttcctcccaactttaag 370 Query: 188 gatgttgnaaacacaatttncaagcgcttgtttcgtgtttatgcccacatataccattcc 247 ||||| | || || || | |||||| |||| ||||| ||||| || || || ||||| Sbjct: 371 gatgtcgtgaagacgatattcaagcggctgttccgtgtatatgctcatatttatcattct 430 Query: 248 cattttcagaagattgt 264 || |||||||| ||||| Sbjct: 431 cactttcagaaaattgt 447
>ref|NM_123923.3| Arabidopsis thaliana unknown protein AT5G45550 mRNA, complete cds Length = 896 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 323 acaatgactgctggcccaaagtacgagtatagatgggcagatggtgtacagatcaagaag 382 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggat 117 ||||| || || || || ||||| || || |||||| | ||||| ||||| Sbjct: 383 cccatcgaggtttctgctccaaagtatgtcgagtacttgatggattggat 432
>gb|AY117158.1| Arabidopsis thaliana unknown protein (At5g45550) mRNA, complete cds Length = 679 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 256 acaatgactgctggcccaaagtacgagtatagatgggcagatggtgtacagatcaagaag 315 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggat 117 ||||| || || || || ||||| || || |||||| | ||||| ||||| Sbjct: 316 cccatcgaggtttctgctccaaagtatgtcgagtacttgatggattggat 365
>gb|AY045864.1| Arabidopsis thaliana unknown protein (At5g45550) mRNA, complete cds Length = 911 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 321 acaatgactgctggcccaaagtacgagtatagatgggcagatggtgtacagatcaagaag 380 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggat 117 ||||| || || || || ||||| || || |||||| | ||||| ||||| Sbjct: 381 cccatcgaggtttctgctccaaagtatgtcgagtacttgatggattggat 430
>emb|AJ920380.1| Poa pratensis partial mRNA for Mob1-like protein (mob1 gene) Length = 654 Score = 75.8 bits (38), Expect = 6e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 39 gatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaaatacgtgg 98 ||||||||||||| || || ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 293 gatgggctgatggagtgcaaataaagaaaccaatcgaagtttctgcaccaaaatatgtgg 352 Query: 99 agtacctaatggactggattga 120 |||| | |||||||||||||| Sbjct: 353 agtatttgatggactggattga 374
>emb|AJ920379.1| Poa pratensis partial mob1 gene for Mob1-like protein, exons 1-2 Length = 523 Score = 75.8 bits (38), Expect = 6e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 39 gatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaaatacgtgg 98 ||||||||||||| || || ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 266 gatgggctgatggagtgcaaataaagaaaccaatcgaagtttctgcaccaaaatatgtgg 325 Query: 99 agtacctaatggactggattga 120 |||| | |||||||||||||| Sbjct: 326 agtatttgatggactggattga 347
>emb|BX834019.1|CNS09ZAI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZD04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 812 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 295 acaatgactgctggcccaaagtacgagtatagatgggcagatggtgtacagatcaagaag 354 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggat 117 ||||| || || || || ||||| || || |||||| | ||||| ||||| Sbjct: 355 cccatcgaggtttctgctccaaagtatgtcgagtacttgatggattggat 404
>emb|BX832788.1|CNS09Z5E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL12ZC07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 865 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 291 acaatgactgctggcccaaagtacgagtatagatgggcagatggtgtacagatcaagaag 350 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggat 117 ||||| || || || || ||||| || || |||||| | ||||| ||||| Sbjct: 351 cccatcgaggtttctgctccaaagtatgtcgagtacttgatggattggat 400
>gb|AY086730.1| Arabidopsis thaliana clone 27099 mRNA, complete sequence Length = 883 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaaa 67 ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 321 acaatgactgctggcccaaagtacgagtatagatgggcagatggtgtacagatcaagaag 380 Query: 68 cccatagaagtgtcagcaccaaaatacgtggagtacctaatggactggat 117 ||||| || || || || ||||| || || |||||| | ||||| ||||| Sbjct: 381 cccatcgaggtttctgctccaaagtatgtcgagtacttgatggattggat 430
>gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, complete sequence Length = 163635 Score = 71.9 bits (36), Expect = 1e-09 Identities = 82/98 (83%) Strand = Plus / Minus Query: 167 ccatttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtt 226 ||||||||| |||||||||||||||||| || ||||||| ||||| | |||||||| Sbjct: 118026 ccatttccatccaacttcaaggatgttgtcaagacaatttttaagcgtctctttcgtgtg 117967 Query: 227 tatgcccacatataccattcccattttcagaagattgt 264 ||||| || || || || |||||||||||||| ||||| Sbjct: 117966 tatgcacatatttatcactcccattttcagaaaattgt 117929 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 32 gagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaaa 91 |||||| | ||||||||||| ||||| || ||||| || || ||||| || || |||||| Sbjct: 118783 gagtacaggtgggctgatggagtacaaattaagaagcctattgaagtttcggctccaaaa 118724 Query: 92 tacgtggagtacctaatggactggattgaa 121 ||||| || || | ||||||||||||||| Sbjct: 118723 tacgttgaatatttgatggactggattgaa 118694 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 1 ctgcccaacaatgactgcaggcccaaagtatg 32 |||||| ||||||||||||||||| ||||||| Sbjct: 121138 ctgccctacaatgactgcaggccctaagtatg 121107
>gb|AY303170.1| Solanum bulbocastanum chromosome 8 clone CB3A14, complete sequence Length = 79178 Score = 65.9 bits (33), Expect = 6e-08 Identities = 79/95 (83%) Strand = Plus / Plus Query: 170 tttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttat 229 |||||| |||||||||||||||||| || ||||||| ||||| | |||||||| ||| Sbjct: 14452 tttccatccaacttcaaggatgttgtcaagacaatttttaagcgtctctttcgtgtgtat 14511 Query: 230 gcccacatataccattcccattttcagaagattgt 264 || || || || || |||||||||||||| ||||| Sbjct: 14512 gcacatatttatcactcccattttcagaaaattgt 14546 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Plus Query: 32 gagtaccgatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaaa 91 |||||| | ||||||||||| ||||| || ||||| || || ||||| || || |||||| Sbjct: 13689 gagtacaggtgggctgatggagtacaaattaagaagcctattgaagtttcggctccaaaa 13748 Query: 92 tacgtggagtacctaatggactggattgaa 121 ||||| || || | ||||||||||||||| Sbjct: 13749 tacgttgaatatttgatggactggattgaa 13778 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 ctgcccaacaatgactgcaggcccaaagtatg 32 |||||| ||||||||||||||||| ||||||| Sbjct: 11335 ctgccctacaatgactgcaggccctaagtatg 11366
>emb|AJ635583.1| Medicago sativa subsp. falcata mob1 gene for Mob1-like protein, exons 1-3, allele mutant Length = 1693 Score = 58.0 bits (29), Expect = 1e-05 Identities = 78/95 (82%) Strand = Plus / Plus Query: 170 tttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttat 229 |||||||||||||||| ||||||| || ||||| | |||||| || || ||||| ||| Sbjct: 1230 tttccacccaacttcagagatgttgtcaagacaatattcaagcgattattccgtgtatat 1289 Query: 230 gcccacatataccattcccattttcagaagattgt 264 || ||||| || || || | ||||||||||||||| Sbjct: 1290 gctcacatttatcactcacgttttcagaagattgt 1324
>emb|AJ635581.1| Medicago sativa subsp. falcata mRNA for Mob1-like protein (mob1 gene), allele mutant Length = 444 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 11 atgactgcaggcccaaagtatgagtaccgatgggctga 48 ||||||||||| || ||||||||||| ||||||||||| Sbjct: 262 atgactgcaggacccaagtatgagtatcgatgggctga 299
>emb|AJ319713.2|MSA319713 Medicago sativa subsp. falcata mRNA for Mob1-like protein (mob1 gene), allele wild-type Length = 648 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 11 atgactgcaggcccaaagtatgagtaccgatgggctga 48 ||||||||||| || ||||||||||| ||||||||||| Sbjct: 262 atgactgcaggacccaagtatgagtatcgatgggctga 299 Score = 42.1 bits (21), Expect = 0.87 Identities = 76/95 (80%) Strand = Plus / Plus Query: 170 tttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttat 229 ||||||||||| |||| ||||||| || ||||| | ||||| || || ||||| ||| Sbjct: 421 tttccacccaatttcagagatgttgtcaagacaatatttaagcgattattccgtgtatat 480 Query: 230 gcccacatataccattcccattttcagaagattgt 264 || ||| | || || || ||||||||||||||||| Sbjct: 481 gctcacgtttatcactcacattttcagaagattgt 515
>emb|AM161645.1| Medicago sativa subsp. falcata mRNA for Mob1-like protein (mob1-B gene) Length = 880 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 11 atgactgcaggcccaaagtatgagtaccgatgggctga 48 ||||||||||| || ||||||||||| ||||||||||| Sbjct: 494 atgactgcaggacccaagtatgagtatcgatgggctga 531 Score = 50.1 bits (25), Expect = 0.004 Identities = 77/95 (81%) Strand = Plus / Plus Query: 170 tttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttat 229 ||||||||||| |||| ||||||| || ||||| | ||||| || || ||||| ||| Sbjct: 653 tttccacccaatttcagagatgttgtcaagacaatatttaagcgattattccgtgtatat 712 Query: 230 gcccacatataccattcccattttcagaagattgt 264 || ||||| || || || ||||||||||||||||| Sbjct: 713 gctcacatttatcactcacattttcagaagattgt 747
>ref|NM_118023.1| Arabidopsis thaliana unknown protein AT4G19050 mRNA, complete cds Length = 4218 Score = 46.1 bits (23), Expect = 0.056 Identities = 50/59 (84%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaa 66 ||||||||||| || || ||||| || ||| ||||||| ||||||||||| || ||||| Sbjct: 3826 acaatgactgctggtcccaagtacgaatacagatgggccgatggtgtacaaatcaagaa 3884
>gb|BT017780.1| Zea mays clone EL01N0503E06.c mRNA sequence Length = 873 Score = 46.1 bits (23), Expect = 0.056 Identities = 35/39 (89%) Strand = Plus / Plus Query: 77 gtgtcagcaccaaaatacgtggagtacctaatggactgg 115 ||||| ||||| || |||||||||||||| ||||||||| Sbjct: 313 gtgtctgcacccaagtacgtggagtacctgatggactgg 351
>gb|BT006214.1| Arabidopsis thaliana At4g19050 gene, complete cds Length = 648 Score = 46.1 bits (23), Expect = 0.056 Identities = 50/59 (84%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaa 66 ||||||||||| || || ||||| || ||| ||||||| ||||||||||| || ||||| Sbjct: 256 acaatgactgctggtcccaagtacgaatacagatgggccgatggtgtacaaatcaagaa 314
>dbj|AK117341.1| Arabidopsis thaliana At4g19050 mRNA for unknown protein, complete cds, clone: RAFL16-90-M13 Length = 945 Score = 46.1 bits (23), Expect = 0.056 Identities = 50/59 (84%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtatgagtaccgatgggctgatggtgtacagataaagaa 66 ||||||||||| || || ||||| || ||| ||||||| ||||||||||| || ||||| Sbjct: 364 acaatgactgctggtcccaagtacgaatacagatgggccgatggtgtacaaatcaagaa 422
>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19 Length = 85020 Score = 46.1 bits (23), Expect = 0.056 Identities = 65/79 (82%) Strand = Plus / Plus Query: 39 gatgggctgatggtgtacagataaagaaacccatagaagtgtcagcaccaaaatacgtgg 98 ||||||| |||||||||||||| ||||| ||||| || || || || ||||| || || | Sbjct: 83551 gatgggcagatggtgtacagatcaagaagcccatcgaggtttctgctccaaagtatgtcg 83610 Query: 99 agtacctaatggactggat 117 ||||| | ||||| ||||| Sbjct: 83611 agtacttgatggattggat 83629 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 acaatgactgcaggcccaaagtat 31 ||||||||||| |||||||||||| Sbjct: 83087 acaatgactgctggcccaaagtat 83110
>ref|XM_468620.1| Oryza sativa (japonica cultivar-group), mRNA Length = 654 Score = 44.1 bits (22), Expect = 0.22 Identities = 49/58 (84%) Strand = Plus / Plus Query: 75 aagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggccagcttga 132 ||||||| || ||||| |||||||||||||| ||||| ||| | || |||||||||| Sbjct: 326 aagtgtctgctccaaagtacgtggagtacctgatggattgggtggagagccagcttga 383
>gb|AC113433.8| Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence Length = 129167 Score = 44.1 bits (22), Expect = 0.22 Identities = 49/58 (84%) Strand = Plus / Minus Query: 75 aagtgtcagcaccaaaatacgtggagtacctaatggactggattgaaggccagcttga 132 ||||||| || ||||| |||||||||||||| ||||| ||| | || |||||||||| Sbjct: 20630 aagtgtctgctccaaagtacgtggagtacctgatggattgggtggagagccagcttga 20573
>emb|AJ635582.1| Medicago sativa subsp. falcata mob1 gene for Mob1-like protein, exons 1-3, allele wild-type Length = 1627 Score = 42.1 bits (21), Expect = 0.87 Identities = 76/95 (80%) Strand = Plus / Plus Query: 170 tttccacccaacttcaaggatgttgnaaacacaatttncaagcgcttgtttcgtgtttat 229 ||||||||||| |||| ||||||| || ||||| | ||||| || || ||||| ||| Sbjct: 1164 tttccacccaatttcagagatgttgtcaagacaatatttaagcgattattccgtgtatat 1223 Query: 230 gcccacatataccattcccattttcagaagattgt 264 || ||| | || || || ||||||||||||||||| Sbjct: 1224 gctcacgtttatcactcacattttcagaagattgt 1258
>gb|AC011065.6| Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone BACR37P12, complete sequence Length = 181103 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 cccacatataccattcccatt 251 ||||||||||||||||||||| Sbjct: 61649 cccacatataccattcccatt 61669
>gb|AE003634.2| Drosophila melanogaster chromosome 2L, section 43 of 83 of the complete sequence Length = 265341 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 cccacatataccattcccatt 251 ||||||||||||||||||||| Sbjct: 96418 cccacatataccattcccatt 96438
>gb|AC006240.1|AC006240 Drosophila melanogaster, chromosome 2L, region 33A3-33B2, P1 clones DS06189, DS04362, and DS07071, complete sequence Length = 170056 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 cccacatataccattcccatt 251 ||||||||||||||||||||| Sbjct: 43360 cccacatataccattcccatt 43340
>gb|U66061.1| Human germline T-cell receptor beta chain TCRBV17S1A1T, TCRBV2S1, TCRBV10S1P, TCRBV29S1P, TCRBV19S1P, TCRBV15S1, TCRBV11S1A1T, HVB relic, TCRBV28S1P, TCRBV34S1, TCRBV14S1, TCRBV3S1, TCRBV4S1A1T, TRY4, TRY5, TRY6, TRY7, TRY8, TCRBD1, TCRBJ1S1, TCRBJ1S2, TCRBJ1S3, TCRBJ1S4, TCRBJ1S5, TCRBJ1S6, TCRBC1, TCRBD2, TCRBJ2S1, TCRBJ2S2, TCRBJ2S3, TCRBJ2S4, TCRBJ2S5, TCRBJ2S6, TCRBJ2S7, TCRBC2, TCRBV20S1A1N2 genes from bases 452324 to 684973 (section 3 of 3) Length = 232650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 attcccattttcagaagatt 262 |||||||||||||||||||| Sbjct: 73305 attcccattttcagaagatt 73286
>gb|AC146317.3| Microcebus murinus clone CH257-477O8, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 ctgatggtgtacagataaagaaac 68 |||||||| ||||||||||||||| Sbjct: 127897 ctgatggtctacagataaagaaac 127920
>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7 Length = 684973 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 attcccattttcagaagatt 262 |||||||||||||||||||| Sbjct: 525628 attcccattttcagaagatt 525609
>gb|AC146433.3| Pan troglodytes BAC clone RP43-19C19 from 7, complete sequence Length = 180951 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 attcccattttcagaagatt 262 |||||||||||||||||||| Sbjct: 73254 attcccattttcagaagatt 73235
>emb|CR954296.5| Zebrafish DNA sequence from clone DKEY-114K23 in linkage group 8, complete sequence Length = 72443 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccacccaacttcaaggatgt 192 |||||||||||||||||||| Sbjct: 70125 ccacccaacttcaaggatgt 70144
>emb|BX005025.16| Zebrafish DNA sequence from clone DKEY-67K20 in linkage group 8, complete sequence Length = 196375 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acaatgaatccttatttcct 151 |||||||||||||||||||| Sbjct: 89077 acaatgaatccttatttcct 89096
>emb|BX005020.7| Zebrafish DNA sequence from clone DKEY-237D7 in linkage group 8, complete sequence Length = 202747 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 acaatgaatccttatttcct 151 |||||||||||||||||||| Sbjct: 113671 acaatgaatccttatttcct 113652
>gb|AC138024.2| Homo sapiens chromosome 1 clone RP5-1099E6, complete sequence Length = 163815 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 cccacatataccattcccattttc 254 ||||||||||||| |||||||||| Sbjct: 17798 cccacatataccactcccattttc 17775
>gb|AC119429.3| Homo sapiens chromosome 1 clone RP4-723P6, complete sequence Length = 115940 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 cccacatataccattcccattttc 254 ||||||||||||| |||||||||| Sbjct: 33266 cccacatataccactcccattttc 33243
>gb|AC149201.2| Macaca mulatta Try4 (try4) gene, complete cds; trypsinogen (try5) and trypsinogen (try6) pseudogenes, complete sequence; trypsinogen (try7) pseudogene, partial sequence; trypsinogen (try8) pseudogene, complete sequence; try9 (try9) and try10 (try10) genes, complete cds; trypsinogen (try11) pseudogene, complete sequence; try12 (try12), try13 (try13), and try14 (try14) genes, complete cds; trypsinogen (try15) pseudogene, complete sequence; and try16 (try16) gene, complete cds Length = 188583 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 attcccattttcagaagatt 262 |||||||||||||||||||| Sbjct: 2283 attcccattttcagaagatt 2264
>emb|AL928845.10| Zebrafish DNA sequence from clone CH211-103N10, complete sequence Length = 72192 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acaatgaatccttatttcct 151 |||||||||||||||||||| Sbjct: 57748 acaatgaatccttatttcct 57767
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 ctgatggtgtacagataaagaaac 68 |||||||| ||||||||||||||| Sbjct: 1259052 ctgatggtctacagataaagaaac 1259075
>emb|AL929282.5| Zebrafish DNA sequence from clone CH211-163L21, complete sequence Length = 131005 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccacccaacttcaaggatgt 192 |||||||||||||||||||| Sbjct: 81345 ccacccaacttcaaggatgt 81364 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,146,988 Number of Sequences: 3902068 Number of extensions: 2146988 Number of successful extensions: 41917 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41723 Number of HSP's gapped (non-prelim): 190 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)