>gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205638

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 142    cccccatgctgcccctagtttg 163
              ||||||||||||||||||||||
Sbjct: 182622 cccccatgctgcccctagtttg 182601

>gb|AC118676.6| Mus musculus chromosome 7, clone RP24-178N18, complete sequence
          Length = 149930

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 407    aaaggagctttacgttcaggg 427
              |||||||||||||||||||||
Sbjct: 142636 aaaggagctttacgttcaggg 142616

>gb|AC006007.1| Homo sapiens PAC clone RP5-819O4 from 7, complete sequence
          Length = 124293

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 589   tgtttctatatatttacaaat 609
             |||||||||||||||||||||
Sbjct: 67845 tgtttctatatatttacaaat 67825

>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence
          Length = 214373

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   aaaggagctttacgttcaggg 427
             |||||||||||||||||||||
Sbjct: 84012 aaaggagctttacgttcaggg 83992

>emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on chromosome 4, complete
              sequence
          Length = 193847

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 571    aaatctgtctacatgttttgtttct 595
              ||||||||||||||||||| |||||
Sbjct: 130291 aaatctgtctacatgttttttttct 130267

>gb|AC134839.3| Mus musculus BAC clone RP24-362O23 from chromosome 19, complete
             sequence
          Length = 178560

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   ccttcttcctgggacctact 525
             ||||||||||||||||||||
Sbjct: 76270 ccttcttcctgggacctact 76251

>gb|AY100533.1| Uncultured bacterium clone cvf74038 16S ribosomal RNA gene, partial
           sequence
          Length = 686

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 tgacaccgaagagcaagccc 388
           ||||||||||||||||||||
Sbjct: 70  tgacaccgaagagcaagccc 51

>gb|AY555590.1| Uncultured alpha proteobacterium clone Alph-16 16S ribosomal RNA
           gene, partial sequence
          Length = 508

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 tgacaccgaagagcaagccc 388
           ||||||||||||||||||||
Sbjct: 129 tgacaccgaagagcaagccc 110

>gb|DQ129317.1| Uncultured bacterium clone AKIW558 16S ribosomal RNA gene, partial
           sequence
          Length = 1426

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 tgacaccgaagagcaagccc 388
           ||||||||||||||||||||
Sbjct: 793 tgacaccgaagagcaagccc 774

>gb|DQ129305.1| Uncultured bacterium clone AKIW867 16S ribosomal RNA gene, partial
           sequence
          Length = 1455

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 799 cgacaccgaagagcaagccc 780

>emb|X04658.1|CERVDNA Carnation etched ring virus (CERV) DNA
          Length = 7932

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 591  tttctatatatttacaaata 610
            ||||||||||||||||||||
Sbjct: 6152 tttctatatatttacaaata 6171

>emb|AJ853858.1| Carnation etched ring virus, complete genome, Indian isolate
          Length = 7924

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 591  tttctatatatttacaaata 610
            ||||||||||||||||||||
Sbjct: 6144 tttctatatatttacaaata 6163

>emb|CR376829.10| Zebrafish DNA sequence from clone CH211-218I18 in linkage group 8,
             complete sequence
          Length = 197983

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 580   tacatgttttgtttctatatattt 603
             |||||||||| |||||||||||||
Sbjct: 59294 tacatgttttttttctatatattt 59271

>emb|BX548251.5| Zebrafish DNA sequence from clone BUSM1-127I14, complete sequence
          Length = 115316

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   catgttttgtttctatatat 601
             ||||||||||||||||||||
Sbjct: 66874 catgttttgtttctatatat 66893

>gb|DQ413109.1| Uncultured bacterium clone 50 16S ribosomal RNA gene, partial
           sequence
          Length = 1415

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 778 cgacaccgaagagcaagccc 759

>gb|DQ413102.1| Uncultured bacterium clone 43 16S ribosomal RNA gene, partial
           sequence
          Length = 1418

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 780 cgacaccgaagagcaagccc 761

>emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 in linkage group 23,
              complete sequence
          Length = 171113

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 572    aatctgtctacatgttttgt 591
              ||||||||||||||||||||
Sbjct: 149677 aatctgtctacatgttttgt 149696



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   aatctgtctacatgttttgt 591
             ||||||||||||||||||||
Sbjct: 90949 aatctgtctacatgttttgt 90968

>dbj|AB231419.1| Uncultured bacterium gene for 16S ribosomal RNA, partial sequence,
           clone: SBR-Sludge-33
          Length = 560

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 492 cgacaccgaagagcaagccc 473

>dbj|AB231392.1| Uncultured bacterium gene for 16S ribosomal RNA, partial sequence,
           clone: High-Density-68
          Length = 536

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 468 cgacaccgaagagcaagccc 449

>dbj|AB231376.1| Uncultured bacterium gene for 16S ribosomal RNA, partial sequence,
           clone: High-Density-15
          Length = 560

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 492 cgacaccgaagagcaagccc 473

>emb|CR925804.8| Zebrafish DNA sequence from clone CH211-151M7 in linkage group 14,
             complete sequence
          Length = 144393

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   aatctgtctacatgttttgt 591
             ||||||||||||||||||||
Sbjct: 36239 aatctgtctacatgttttgt 36258

>emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 in linkage group 16,
              complete sequence
          Length = 166747

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    aatctgtctacatgttttgt 591
              ||||||||||||||||||||
Sbjct: 125853 aatctgtctacatgttttgt 125834

>emb|AL929235.10| Mouse DNA sequence from clone RP23-82L23 on chromosome 2, complete
             sequence
          Length = 189012

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   gaccaaaaattttacaaatc 575
             ||||||||||||||||||||
Sbjct: 10103 gaccaaaaattttacaaatc 10084

>gb|AC123806.4| Mus musculus BAC clone RP24-152B7 from 10, complete sequence
          Length = 160167

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   tgttttgtttctatatattt 603
             ||||||||||||||||||||
Sbjct: 61125 tgttttgtttctatatattt 61144

>gb|AC141428.4| Mus musculus BAC clone RP23-127I7 from 10, complete sequence
          Length = 164381

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    tgttttgtttctatatattt 603
              ||||||||||||||||||||
Sbjct: 143768 tgttttgtttctatatattt 143787

>gb|DQ250537.1| Uncultured bacterium clone TFOc8 16S ribosomal RNA gene, partial
           sequence
          Length = 924

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 796 cgacaccgaagagcaagccc 777

>gb|DQ250533.1| Uncultured bacterium clone TFOb23 16S ribosomal RNA gene, partial
           sequence
          Length = 906

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgacaccgaagagcaagccc 301
           ||||||||||||||||||||
Sbjct: 778 cgacaccgaagagcaagccc 759


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,292,924
Number of Sequences: 3902068
Number of extensions: 5292924
Number of successful extensions: 111103
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111041
Number of HSP's gapped (non-prelim): 62
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)