ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baale15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E07, full insert sequence Length = 2082 Score = 541 bits (273), Expect = e-151 Identities = 526/606 (86%), Gaps = 4/606 (0%) Strand = Plus / Plus Query: 1 tcattgttgtctctgcggnatgatggcgttcagccacaaacaaatgaggcaattgcgcat 60 |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||| Sbjct: 332 tcattgttgtctctgcgg-atgatggtgttcgtccacaaacaaatgaggcaattgcacat 390 Query: 61 gcaaaggcagccagnagtccctattgtaatagctataaataaggtagacaaggnagggtg 120 ||||||||||| | |||||||||||| ||||| ||||| ||| ||||||||| ||| | Sbjct: 391 gcaaaggcagct-ggagtccctattgtgatagccataaacaagatagacaaggaagga-g 448 Query: 121 ctaatccagaacgagtcatgcaagaactttcccagnattggacttatgccagagatgtgg 180 ||||| | ||||| |||||||||| |||||||| |||||||||||||||||| |||| Sbjct: 449 ctaatgctgaacgggtcatgcaagggctttccca-aattggacttatgccagaggcgtgg 507 Query: 181 ggtggtgacaccccgatggttcagataagtgctcttaagggagagaatgttgatgagcta 240 |||||||| | ||| ||| ||||||||||||||||||| |||||| ||| ||||| ||| Sbjct: 508 ggtggtgatatcccaatgattcagataagtgctcttaatggagagggtgtagatgaacta 567 Query: 241 ttagagaccgtcatgcttgttgctgagttgctagaattaaaagcgaaccctcatagaaat 300 || ||||| |||| |||||||||||| ||| ||||||||| || || |||||||||||| Sbjct: 568 ttggagactatcattcttgttgctgagctgcaagaattaaaggccaatcctcatagaaat 627 Query: 301 gcaaagggtacggttattgaagcatgtcttgacaaggccagaggacctcttgccacccta 360 ||||||||||| |||||||||||||| |||||||| || | |||| |||||||||||||| Sbjct: 628 gcaaagggtacagttattgaagcatgccttgacaaagctaaaggatctcttgccacccta 687 Query: 361 gttgtacagaatggaaccttgaataagggcgatattcttgtttgcggtgaagcttttgga 420 |||||||||||||||||| | || ||||| |||||| |||| || ||||| ||||||||| Sbjct: 688 gttgtacagaatggaaccctaaacaagggtgatattgttgtgtgtggtgaggcttttgga 747 Query: 421 aagatccgtgcaatgtatgatgaccgtggaagtctcgtagaccaagcaacgccatccaac 480 ||||||||||||||||||||||| |||||| || | || | || ||||||||| Sbjct: 748 aagatccgtgcaatgtatgatgatggtggaaagcttatcgataaggctgggccatccaat 807 Query: 481 gccgtgcagattattggcttgaacaatgtaccccttgctggtgacgaatttgagtctgtc 540 ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 808 gccgtgcaggttattggcttgaataatgtaccccttgctggtgatgaatttgagtctgtg 867 Query: 541 gatgaccttgatgttgcacgcgaaagggcaaacgcacgtgccgatgcaatgagaattgaa 600 || |||||||||||||||| |||||||||||||||||||| || ||| ||||||||||| Sbjct: 868 gacaaccttgatgttgcacgtgaaagggcaaacgcacgtgctgaagcactgagaattgaa 927 Query: 601 aggata 606 |||||| Sbjct: 928 aggata 933
>gb|AY103661.1| Zea mays PCO126844 mRNA sequence Length = 1594 Score = 270 bits (136), Expect = 5e-69 Identities = 337/404 (83%) Strand = Plus / Plus Query: 166 atgccagagatgtggggtggtgacaccccgatggttcagataagtgctcttaagggagag 225 |||||||| |||||||||||||| ||||| ||||| ||||||||||||||| || || Sbjct: 10 atgccagaaatgtggggtggtgataccccaatggtcgagataagtgctcttactggggat 69 Query: 226 aatgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaattaaaagcg 285 ||||||||||| || | || || |||||||||||||| ||||||| ||||||||| || Sbjct: 70 aatgttgatgaacttctggaaactgtcatgcttgttgcagagttgcaagaattaaaggca 129 Query: 286 aaccctcatagaaatgcaaagggtacggttattgaagcatgtcttgacaaggccagagga 345 || || ||||| ||||| ||||| || |||||||||||||| ||||||||||||| ||| Sbjct: 130 aatccacataggaatgcgaagggcactgttattgaagcatgccttgacaaggccaaaggg 189 Query: 346 cctcttgccaccctagttgtacagaatggaaccttgaataagggcgatattcttgtttgc 405 |||||||| ||| ||||||| |||||||||||| | || || | |||||| |||| || Sbjct: 190 cctcttgctaccttagttgttcagaatggaaccctaaacaaagctgatattattgtgtgt 249 Query: 406 ggtgaagcttttggaaagatccgtgcaatgtatgatgaccgtggaagtctcgtagaccaa 465 |||||||||| |||||||||||||||| ||||||||||| |||| | ||||| ||| || Sbjct: 250 ggtgaagcttatggaaagatccgtgcattgtatgatgactgtgggaagctcgttgacaaa 309 Query: 466 gcaacgccatccaacgccgtgcagattattggcttgaacaatgtaccccttgctggtgac 525 ||| |||||||| || |||||| |||||||| | || || || |||||||| ||||| Sbjct: 310 gcaggaccatccaatgcagtgcaggttattggcctcaataacgttccccttgccggtgat 369 Query: 526 gaatttgagtctgtcgatgaccttgatgttgcacgcgaaagggc 569 ||||||||| ||| || |||||||||||||||| |||||||| Sbjct: 370 gaatttgaggttgttgacaaccttgatgttgcacgtgaaagggc 413
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 165 bits (83), Expect = 2e-37 Identities = 134/151 (88%) Strand = Plus / Plus Query: 273 agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 332 ||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 72293 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 72352 Query: 333 caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 392 ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 72353 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 72412 Query: 393 tattcttgtttgcggtgaagcttttggaaag 423 |||| |||| || ||||| |||||||||||| Sbjct: 72413 tattgttgtgtgtggtgaggcttttggaaag 72443 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Plus Query: 491 ttattggcttgaacaatgtaccccttgctggtgacgaatttgagtctgtcgatgaccttg 550 ||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 73999 ttattggcttgaataatgtaccccttgctggtgatgaatttgagtctgtggacaaccttg 74058 Query: 551 atgttgcacgcgaaagggcaaacgcacgtgccgatgcaatgagaattgaaaggata 606 |||||||||| |||||||||||||||||||| || ||| ||||||||||||||||| Sbjct: 74059 atgttgcacgtgaaagggcaaacgcacgtgctgaagcactgagaattgaaaggata 74114 Score = 107 bits (54), Expect = 4e-20 Identities = 94/105 (89%), Gaps = 2/105 (1%) Strand = Plus / Plus Query: 1 tcattgttgtctctgcggnatgatggcgttcagccacaaacaaatgaggcaattgcgcat 60 |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||| Sbjct: 71740 tcattgttgtctctgcgg-atgatggtgttcgtccacaaacaaatgaggcaattgcacat 71798 Query: 61 gcaaaggcagccagnagtccctattgtaatagctataaataaggt 105 |||||||||| | | |||||||||||| ||||| ||||| ||||| Sbjct: 71799 gcaaaggcag-ctggagtccctattgtgatagccataaacaaggt 71842 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 120 gctaatccagaacgagtcatgcaagaactttcccagnattggacttatgccagagatgtg 179 |||||| | ||||| ||||||||||| |||||||| |||||||||||||||||| ||| Sbjct: 71943 gctaatgctgaacgggtcatgcaagagctttccca-aattggacttatgccagaggcgtg 72001 Query: 180 gggtggtga 188 ||||||||| Sbjct: 72002 gggtggtga 72010 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 201 tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 260 |||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||| ||||| Sbjct: 72141 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 72200 Query: 261 tgctgag 267 ||||||| Sbjct: 72201 tgctgag 72207 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 agatccgtgcaatgtatgatga 443 |||||||||||||||||||||| Sbjct: 72572 agatccgtgcaatgtatgatga 72593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 165 bits (83), Expect = 2e-37 Identities = 134/151 (88%) Strand = Plus / Plus Query: 273 agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 332 ||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 28437369 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 28437428 Query: 333 caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 392 ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 28437429 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 28437488 Query: 393 tattcttgtttgcggtgaagcttttggaaag 423 |||| |||| || ||||| |||||||||||| Sbjct: 28437489 tattgttgtgtgtggtgaggcttttggaaag 28437519 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Plus Query: 491 ttattggcttgaacaatgtaccccttgctggtgacgaatttgagtctgtcgatgaccttg 550 ||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 28439075 ttattggcttgaataatgtaccccttgctggtgatgaatttgagtctgtggacaaccttg 28439134 Query: 551 atgttgcacgcgaaagggcaaacgcacgtgccgatgcaatgagaattgaaaggata 606 |||||||||| |||||||||||||||||||| || ||| ||||||||||||||||| Sbjct: 28439135 atgttgcacgtgaaagggcaaacgcacgtgctgaagcactgagaattgaaaggata 28439190 Score = 107 bits (54), Expect = 4e-20 Identities = 94/105 (89%), Gaps = 2/105 (1%) Strand = Plus / Plus Query: 1 tcattgttgtctctgcggnatgatggcgttcagccacaaacaaatgaggcaattgcgcat 60 |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||| Sbjct: 28436816 tcattgttgtctctgcgg-atgatggtgttcgtccacaaacaaatgaggcaattgcacat 28436874 Query: 61 gcaaaggcagccagnagtccctattgtaatagctataaataaggt 105 |||||||||| | | |||||||||||| ||||| ||||| ||||| Sbjct: 28436875 gcaaaggcag-ctggagtccctattgtgatagccataaacaaggt 28436918 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 120 gctaatccagaacgagtcatgcaagaactttcccagnattggacttatgccagagatgtg 179 |||||| | ||||| ||||||||||| |||||||| |||||||||||||||||| ||| Sbjct: 28437019 gctaatgctgaacgggtcatgcaagagctttccca-aattggacttatgccagaggcgtg 28437077 Query: 180 gggtggtga 188 ||||||||| Sbjct: 28437078 gggtggtga 28437086 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 201 tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 260 |||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||| ||||| Sbjct: 28437217 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 28437276 Query: 261 tgctgag 267 ||||||| Sbjct: 28437277 tgctgag 28437283 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 agatccgtgcaatgtatgatga 443 |||||||||||||||||||||| Sbjct: 28437648 agatccgtgcaatgtatgatga 28437669
>gb|AF324244.1|AF324244 Phaseolus vulgaris translation initiation factor 2 (IF2) gene, complete cds; nuclear gene for chloroplast product Length = 4499 Score = 93.7 bits (47), Expect = 6e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 178 tggggtggtgacaccccgatggttcagataagtgctcttaagggagagaatgttgatgag 237 |||||||| ||||||| ||||||| ||||||||||||||| || ||||||| ||||| Sbjct: 2067 tggggtggcaacaccccaatggttccgataagtgctcttaaagggaagaatgtggatgat 2126 Query: 238 ctattagagaccgtcatgcttgttgctgagttgctagaattaaaagcgaaccctcataga 297 || ||||| || || ||||||||||||||||||| ||| | ||||| || ||| ||||| Sbjct: 2127 ctcttagaaactgttatgcttgttgctgagttgcaagagctgaaagctaatcctgataga 2186 Query: 298 aatgcaaaggg 308 | ||||||||| Sbjct: 2187 agtgcaaaggg 2197 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 546 ccttgatgttgcacgcgaaagggca 570 |||||||| |||||||||||||||| Sbjct: 2435 ccttgatgctgcacgcgaaagggca 2459
>ref|NM_101583.2| Arabidopsis thaliana GTP binding / translation initiation factor AT1G17220 mRNA, complete cds Length = 3633 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Plus Query: 196 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 255 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 2230 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2289 Query: 256 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 308 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 2290 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2342
>gb|BT001007.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds Length = 3081 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Plus Query: 196 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 255 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 1930 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 1989 Query: 256 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 308 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 1990 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2042
>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete sequence Length = 176947 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 294 tagaaatgcaaagggtacggttatt 318 |||||||||||||| |||||||||| Sbjct: 102571 tagaaatgcaaaggatacggttatt 102595
>dbj|AB206848.1| Prunus persica DNA, microsatellite marker MA053a Length = 530 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gtaatagctataaataaggta 106 ||||||||||||||||||||| Sbjct: 69 gtaatagctataaataaggta 49
>gb|AF367343.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds Length = 3631 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Plus Query: 196 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 255 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 2229 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2288 Query: 256 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 308 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 2289 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2341
>gb|AC124751.4| Mus musculus BAC clone RP23-274P18 from chromosome 13, complete sequence Length = 160979 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 ggttattgaagcatgtcttgacaa 335 ||||||| |||||||||||||||| Sbjct: 63376 ggttatttaagcatgtcttgacaa 63399
>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175262 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cagaatggaaccttgaataa 386 |||||||||||||||||||| Sbjct: 55109 cagaatggaaccttgaataa 55128
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 caatgtaccccttgctggtgacga 527 |||||| ||||||||||||||||| Sbjct: 901371 caatgtcccccttgctggtgacga 901394
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cagaatggaaccttgaataa 386 |||||||||||||||||||| Sbjct: 262912 cagaatggaaccttgaataa 262931
>emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1 Length = 44352 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cagaatggaaccttgaataa 386 |||||||||||||||||||| Sbjct: 4566 cagaatggaaccttgaataa 4585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,308,823 Number of Sequences: 3902068 Number of extensions: 4308823 Number of successful extensions: 69735 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69639 Number of HSP's gapped (non-prelim): 86 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
