>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1|
          Length = 1909

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = +1

Query: 211  KQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLK 390
            K A++V MT T AA  R+   Q+  +   +++EE+A++LE  T I TL +         +
Sbjct: 969  KDAEVVGMTTTGAAKYRQILQQVEPRI--VIVEEAAEVLEAHT-IATLSKA-------CQ 1018

Query: 391  RCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAQLYNW 570
              ILIGDH QL P        K  +++ SLF R V++ +P++ LN Q R RP IA+L   
Sbjct: 1019 HLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTP 1078

Query: 571  R-YRELGDLPYV 603
              Y++L + P V
Sbjct: 1079 HIYQDLENHPSV 1090

>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1|
          Length = 1918

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
 Frame = +1

Query: 211  KQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLK 390
            K A++V MT T AA K R  LQ   +   +++EE+A++LE  T I TL +         +
Sbjct: 976  KDAQVVGMTTTGAA-KYRQILQK-VEPRIVIVEEAAEVLEAHT-IATLSKA-------CQ 1025

Query: 391  RCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAQLYNW 570
              ILIGDH QL P        K  +++ SLF R V++ +P++ LN Q R  P IA+L   
Sbjct: 1026 HLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTP 1085

Query: 571  R-YRELGDLPYV 603
              Y++L + P V
Sbjct: 1086 HIYQDLENHPSV 1097

>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
           (ATP-dependent helicase UPF1)
          Length = 1254

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 43/134 (32%), Positives = 69/134 (51%)
 Frame = +1

Query: 157 RAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 336
           + ++ LK   ER    +T+ A ++  TC  AA    D     F++  +L++ES Q  E E
Sbjct: 613 KKYKNLKRATERE---ITQSADVICCTCVGAA----DLRLSNFRFRQVLIDESTQATEPE 665

Query: 337 TFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI 516
             IP +L         +K+ +L+GDH QL PV+      + + + QSLF R V LG+  I
Sbjct: 666 CLIPLVLG--------VKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVTLGIKPI 716

Query: 517 ELNAQGRARPSIAQ 558
            L  Q R  P++++
Sbjct: 717 RLQVQYRMHPALSE 730

>RENT1_NEUCR (Q9HEH1) Regulator of nonsense transcripts 1 homolog|
          Length = 1093

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 45/134 (33%), Positives = 67/134 (50%)
 Frame = +1

Query: 157 RAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 336
           + F+ L   AER    + + A +V  TC  A   R   +    K+ N+L++ES Q  E E
Sbjct: 578 KRFKQLTRQAERE---ILQNADVVCCTCVGAGDPRLSKM----KFRNVLIDESTQSAEPE 630

Query: 337 TFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI 516
             IP +L          K+ +L+GDH QL PV+ N    K + ++QSLF R V+L    I
Sbjct: 631 CMIPLVLG--------CKQVVLVGDHKQLGPVIMNKKAAK-AGLNQSLFERLVKLQFTPI 681

Query: 517 ELNAQGRARPSIAQ 558
            L  Q R  P +++
Sbjct: 682 RLKVQYRMHPCLSE 695

>RENT1_MOUSE (Q9EPU0) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (mUpf1)
          Length = 1113

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 45/133 (33%), Positives = 66/133 (49%)
 Frame = +1

Query: 157 RAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 336
           + +  LK TAER    +   A ++  TC  A   R   +Q    + ++L++ES Q  E E
Sbjct: 588 KRYRALKRTAERE---LLMNADVICCTCVGAGDPRLAKMQ----FRSILIDESTQATEPE 640

Query: 337 TFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI 516
             +P +L          K+ IL+GDH QL PVV      K + + QSLF R V LG+  I
Sbjct: 641 CMVPVVLGA--------KQLILVGDHCQLGPVVMCKKAAK-AGLSQSLFERLVVLGIRPI 691

Query: 517 ELNAQGRARPSIA 555
            L  Q R  P+++
Sbjct: 692 RLQVQYRMHPALS 704

>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (hUpf1)
          Length = 1129

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 45/133 (33%), Positives = 66/133 (49%)
 Frame = +1

Query: 157 RAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 336
           + +  LK TAER    +   A ++  TC  A   R   +Q    + ++L++ES Q  E E
Sbjct: 604 KRYRALKRTAERE---LLMNADVICCTCVGAGDPRLAKMQ----FRSILIDESTQATEPE 656

Query: 337 TFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI 516
             +P +L          K+ IL+GDH QL PVV      K + + QSLF R V LG+  I
Sbjct: 657 CMVPVVLGA--------KQLILVGDHCQLGPVVMCKKAAK-AGLSQSLFERLVVLGIRPI 707

Query: 517 ELNAQGRARPSIA 555
            L  Q R  P+++
Sbjct: 708 RLQVQYRMHPALS 720

>SEN1_YEAST (Q00416) Helicase SEN1 (EC 3.6.1.-) (tRNA-splicing endonuclease|
            positive effector)
          Length = 2231

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
 Frame = +1

Query: 214  QAKIVAMT---CTHAALKRRDFLQ-LGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYA 381
            QA I+A++   C+  +    D L  +G K+D ++++E+ Q  E+ + IP           
Sbjct: 1555 QAHILAVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGG------ 1608

Query: 382  RLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAQ 558
              KRCI++GD +QLPP V + A   + + +QSLF R  +   PY+ L+ Q R  PSI++
Sbjct: 1609 --KRCIMVGDPNQLPPTVLSGAASNFKY-NQSLFVRMEKNSSPYL-LDVQYRMHPSISK 1663

>RENT1_SCHPO (Q09820) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
           (ATP-dependent helicase SPAC16C9.06c)
          Length = 925

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 40/138 (28%), Positives = 68/138 (49%)
 Frame = +1

Query: 145 LEECRAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQI 324
           +++ +   +L + AE+    + + A ++  TC  A  +R       +K+ ++L++E+ Q 
Sbjct: 517 IQDEKKLRILVAAAEKE---LLRAAHVICCTCVGAGDRRIS----KYKFRSVLIDEATQA 569

Query: 325 LEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLG 504
            E E  IP +L          K+ +L+GDH QL PVV N      S + QSLF R + LG
Sbjct: 570 SEPECMIPLVLGA--------KQVVLVGDHQQLGPVVMNKKVALAS-LSQSLFERLIILG 620

Query: 505 VPYIELNAQGRARPSIAQ 558
                L  Q R  P +++
Sbjct: 621 NSPFRLVVQYRMHPCLSE 638

>RENT1_DROME (Q9VYS3) Regulator of nonsense transcripts 1 homolog|
          Length = 1180

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 42/134 (31%), Positives = 64/134 (47%)
 Frame = +1

Query: 157 RAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 336
           + +  LK  AE     + + A ++  TC  A   R   +    K+ ++L++ES Q  E E
Sbjct: 574 KRYRNLKRAAENQ---LLEAADVICCTCVGAGDGRLSRV----KFTSILIDESMQSTEPE 626

Query: 337 TFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI 516
             +P +L          K+ IL+GDH QL PVV      + + + QSLF R V LG+   
Sbjct: 627 CMVPVVLGA--------KQLILVGDHCQLGPVVMCKKAAR-AGLSQSLFERLVVLGIRPF 677

Query: 517 ELNAQGRARPSIAQ 558
            L  Q R  P ++Q
Sbjct: 678 RLEVQYRMHPELSQ 691

>NAM7_YEAST (P30771) ATP-dependent helicase NAM7 (EC 3.6.1.-) (Nuclear|
           accomodation of mitochondria 7 protein)
           (Nonsense-mediated mRNA decay protein 1) (Up-frameshift
           suppressor 1)
          Length = 971

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 39/115 (33%), Positives = 55/115 (47%)
 Frame = +1

Query: 214 QAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLKR 393
           +A +V  TC  A  KR D      K+  +L++ES Q  E E  IP +           K+
Sbjct: 546 KADVVCCTCVGAGDKRLDT-----KFRTVLIDESTQASEPECLIPIV--------KGAKQ 592

Query: 394 CILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAQ 558
            IL+GDH QL PV+        + + QSLF R + LG   I L  Q R  P +++
Sbjct: 593 VILVGDHQQLGPVILERKAAD-AGLKQSLFERLISLGHVPIRLEVQYRMNPYLSE 646

>SETX_HUMAN (Q7Z333) Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog)|
          Length = 2677

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
 Frame = +1

Query: 274  QLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQ 453
            Q G  +  ++++E+ Q  EIET  P +         R  + IL+GD  QLPP V +M  Q
Sbjct: 2170 QGGVPFSCVIVDEAGQSCEIETLTPLI--------HRCNKLILVGDPKQLPPTVISMKAQ 2221

Query: 454  KYSHMDQSLFTRFVRL-----------GVPYIELNAQGRARPSI 552
            +Y + DQS+  RF RL            +P ++L  Q R  P I
Sbjct: 2222 EYGY-DQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDI 2264

>PR285_HUMAN (Q9BYK8) Peroxisomal proliferator-activated receptor A-interacting|
            complex 285 kDa protein (EC 3.6.1.-) (ATP-dependent
            helicase PRIC285) (PPAR-alpha-interacting complex protein
            285) (PPAR-gamma DBD-interacting protein 1) (PDIP1)
          Length = 2649

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 39/120 (32%), Positives = 59/120 (49%)
 Frame = +1

Query: 133  YSKXLEECRAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEE 312
            Y K L E R FEL              + +++  TC+ AA      L +      +L++E
Sbjct: 2319 YKKVLWEARKFEL-------------DRHEVILCTCSCAASASLKILDVR----QILVDE 2361

Query: 313  SAQILEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRF 492
            +    E ET IP L+Q     + + ++ +L+GDH QL PVVKN   Q    +D+SLF R+
Sbjct: 2362 AGMATEPETLIP-LVQ-----FPQAEKVVLLGDHKQLRPVVKNERLQNLG-LDRSLFERY 2414

>SEN1_SCHPO (Q92355) Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1)|
          Length = 1687

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
 Frame = +1

Query: 136  SKXLEECRAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEES 315
            S+   + +  +LL+  A++A   + KQA +V  T + +         L F    ++++E+
Sbjct: 1326 SQSFTKNKEVDLLRKKAQKA---ILKQADVVCATLSGSGHDLVAHSSLNFS--TVIIDEA 1380

Query: 316  AQILEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVV--KNMAFQKYSHMDQSLFTR 489
            AQ +E++T IP             K+CIL+GD +QLPP V  K  A   YS   QSLF R
Sbjct: 1381 AQAVELDTIIPLRYGA--------KKCILVGDPNQLPPTVLSKKAASLNYS---QSLFVR 1429

Query: 490  FVR-LGVPYIELNAQGRARPSIA 555
              +        L+ Q R  P I+
Sbjct: 1430 IQKNFSNQMCLLSIQYRMHPDIS 1452

>CWF11_SCHPO (O94508) Cell cycle control protein cwf11|
          Length = 1284

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 40/139 (28%), Positives = 64/139 (46%)
 Frame = +1

Query: 145  LEECRAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQI 324
            LEE R F LL+   ++  Y + +Q++I+  T T  + +     + GF ++NL++  S  I
Sbjct: 925  LEEIRPFGLLRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLIVMNSQNI 984

Query: 325  LEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLG 504
             E       L   +  G+ RL   +L+G+ +       N      S+   SLF R   L 
Sbjct: 985  SESSITSILLSNCEPTGFDRL---VLLGNQYLTSG---NQDINNTSN--GSLFKRLRYLK 1036

Query: 505  VPYIELNAQGRARPSIAQL 561
               I+LN Q   R SI+ L
Sbjct: 1037 SRIIDLNTQYNVRESISSL 1055

>RENT1_CAEEL (O76512) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase smg-2) (Nonsense mRNA reducing
           factor 1) (Up-frameshift suppressor 1 homolog)
          Length = 1069

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
 Frame = +1

Query: 217 AKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLKRC 396
           A ++  TC+ AA  R   ++       +L++ES Q  E E  +  +          +++ 
Sbjct: 584 ADVICCTCSSAADARLSKIRTR----TVLIDESTQATEPEILVSIM--------RGVRQL 631

Query: 397 ILIGDHHQLPPVV--KNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAQ 558
           +L+GDH QL PVV  K  A    + + QSLF R V LG+    L  Q R  P +++
Sbjct: 632 VLVGDHCQLGPVVICKKAAI---AGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSE 684

>DNA2L_HUMAN (P51530) DNA2-like homolog (EC 3.6.1.-) (DNA replication|
            ATP-dependent helicase-like homolog) (Fragment)
          Length = 1077

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
 Frame = +1

Query: 223  IVAMTC---THAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLKR 393
            IVA TC    H    R+ F       D  +++E++QI +     P    R         R
Sbjct: 755  IVATTCMGINHPIFSRKIF-------DFCIVDEASQISQPICLGPLFFSR---------R 798

Query: 394  CILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAQLYN 567
             +L+GDH QLPP+V N   +    M +SLF R  +     ++L  Q R    I  L N
Sbjct: 799  FVLVGDHQQLPPLVLNREARALG-MSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSN 855

>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
           helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
           (SMUBP-2) (Glial factor 1) (GF-1)
          Length = 993

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 29/86 (33%), Positives = 40/86 (46%)
 Frame = +1

Query: 172 LKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPT 351
           LK   E A       A +V  T T A+      L     +D ++++E AQ LE   +IP 
Sbjct: 330 LKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPL 389

Query: 352 LLQRQEDGYARLKRCILIGDHHQLPP 429
           L         + ++CIL GDH QLPP
Sbjct: 390 L---------KARKCILAGDHKQLPP 406

>DNA2_YEAST (P38859) DNA replication ATP-dependent helicase DNA2 (EC 3.6.1.-)|
          Length = 1522

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
 Frame = +1

Query: 223  IVAMTCTHA-----ALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARL 387
            +VA TC         L  +DF       D ++++E++QI      +P  L     G    
Sbjct: 1160 VVATTCLGINDILFTLNEKDF-------DYVILDEASQIS-----MPVALGPLRYG---- 1203

Query: 388  KRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI-ELNAQGRARPSIAQLY 564
             R I++GDH+QLPP+VKN A  +   +++SLF  F       + EL  Q R    I  L 
Sbjct: 1204 NRFIMVGDHYQLPPLVKNDA-ARLGGLEESLFKTFCEKHPESVAELTLQYRMCGDIVTLS 1262

Query: 565  NW 570
            N+
Sbjct: 1263 NF 1264

>YKB7_YEAST (P34243) Hypothetical ATP-dependent helicase YKL017C (EC 3.6.1.-)|
          Length = 683

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
 Frame = +1

Query: 133 YSKXLEECRAFELLKSTAERANYLMTKQAKI---VAMTCTHAALKR------RDFLQLGF 285
           Y +  E     +LL+   ++  +   K   I   + +T  H +  R      RD      
Sbjct: 329 YKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQL 388

Query: 286 KYDNLLMEESAQILEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSH 465
            +D L+++E +Q +E + +IP +  + +       + +L GD+ QLPP +K    +   H
Sbjct: 389 -FDTLIIDEVSQAMEPQCWIPLIAHQNQ-----FHKLVLAGDNKQLPPTIKTEDDKNVIH 442

Query: 466 -MDQSLFTRFVRL 501
            ++ +LF R +++
Sbjct: 443 NLETTLFDRIIKI 455

>SMBP2_MESAU (Q60560) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
           helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
           (SMUBP-2) (Insulin II gene enhancer-binding protein)
           (RIPE3B-binding complex 3B2 p110 subunit) (RIP-1)
          Length = 989

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 29/86 (33%), Positives = 39/86 (45%)
 Frame = +1

Query: 172 LKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPT 351
           LK   E A       A +V  T T A+      L     +D ++++E AQ LE   +IP 
Sbjct: 329 LKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPL 388

Query: 352 LLQRQEDGYARLKRCILIGDHHQLPP 429
           L         +  +CIL GDH QLPP
Sbjct: 389 L---------KAPKCILAGDHRQLPP 405

>SMBP2_MOUSE (P40694) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
           helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
           (SMUBP-2) (Cardiac transcription factor 1) (CATF1)
          Length = 993

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 29/86 (33%), Positives = 39/86 (45%)
 Frame = +1

Query: 172 LKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPT 351
           LK   E A       A +V  T T A+      L     +D ++++E AQ LE   +IP 
Sbjct: 329 LKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPL 388

Query: 352 LLQRQEDGYARLKRCILIGDHHQLPP 429
           L         +  +CIL GDH QLPP
Sbjct: 389 L---------KAPKCILAGDHRQLPP 405

>Y104_METJA (Q57568) Hypothetical ATP-dependent helicase MJ0104 (EC 3.6.1.-)|
          Length = 663

 Score = 36.6 bits (83), Expect = 0.068
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = +1

Query: 280 GFKYDNLLMEESAQILEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKY 459
           G+++D ++++E +Q +E    IP +  R         + I+ GDH QLPP V      + 
Sbjct: 392 GWEFDVIVIDEGSQAMEPSCLIPIVKGR---------KLIMAGDHKQLPPTV----LSEN 438

Query: 460 SHMDQSLFTRFVR 498
             + ++LF R ++
Sbjct: 439 EELKKTLFERLIK 451

>RENT1_FUGRU (Q98TR3) Putative regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1)
          Length = 1097

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 35/133 (26%), Positives = 59/133 (44%)
 Frame = +1

Query: 157 RAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 336
           + +  LK TAER    +   A ++  TC  A   R   +Q    + ++L++ES Q  E +
Sbjct: 575 KRYRALKRTAERE---LLMNADVIWCTCVRAGDPRLAKMQ----FRSILIDESTQATEPK 627

Query: 337 TFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYI 516
              P  L  ++         +++G+       V      K + + QSLF R V LG+  I
Sbjct: 628 CIGPVELGAKQ---------LILGEITASWSCVMCKKAAK-AGLSQSLFERLVVLGIRPI 677

Query: 517 ELNAQGRARPSIA 555
            L  Q R  P+++
Sbjct: 678 RLQVQYRMHPALS 690

>YHHX_ECOLI (P46853) Putative oxidoreductase yhhX (EC 1.-.-.-)|
          Length = 345

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = +1

Query: 112 VSNIFLRYSKXLEECRAFELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKY 291
           V++IF R++K  E+   +  +  T++    L     K+V + CTHA           F+Y
Sbjct: 31  VAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVV-CTHA--------DSHFEY 81

Query: 292 DNLLMEESAQILEIETFIPTLLQRQE 369
               +E    +L  + F PTL Q +E
Sbjct: 82  AKRALEAGKNVLVEKPFTPTLAQAKE 107

>DNA2_SCHPO (Q9URU2) DNA replication ATP-dependent helicase dna2 (EC 3.6.1.-)|
          Length = 1398

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 286  KYDNLLMEESAQILEIETFIPTLLQRQEDGYARL-KRCILIGDHHQLPPVVKNMAFQK 456
            K+D  +++E++QI      +P  L     G  +L ++ +L+GDH+QLPP+VKN    K
Sbjct: 1059 KFDYCIIDEASQIP-----LPICL-----GPLQLAEKFVLVGDHYQLPPLVKNSRTSK 1106

>UCR7_ASHGO (Q751U4) Ubiquinol-cytochrome c reductase complex 14 kDa protein|
           (EC 1.10.2.2) (Complex III subunit VII)
          Length = 126

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +1

Query: 226 VAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPTLLQR--QEDGYARLKRCI 399
           +A+      +K   + QLG K+D+L+ EE+         + T L+R  +E+ YAR+ R I
Sbjct: 24  IAVPVAQQFVKLSGYRQLGLKFDDLIAEEN-------DIVQTALRRLPEEESYARVFRII 76

Query: 400 ----LIGDHHQLP 426
               L   HH LP
Sbjct: 77  QAHQLELTHHLLP 89

>UPPS_AQUAE (O67291) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 231

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
 Frame = +1

Query: 133 YSKXLEECRA-FELLKSTAERANYLMTKQAKIVAMTCTHAALKRRDFLQLGFKYDNLLME 309
           +++  EE +A FEL++      NY+ +K+ K+ ++      + RRD L  G    NL+ E
Sbjct: 63  WNRPKEEVKALFELME------NYIRSKREKLYSLGVRVRLIGRRDRLSRGLV--NLMEE 114

Query: 310 ESAQILEIETFIPTLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTR 489
             +   + +                L   I  G    +   VK +   + S +D+  F++
Sbjct: 115 LESDSKDFKNLF-------------LNVAIDYGGRDDILRAVKKIMEVQPSKLDEETFSQ 161

Query: 490 FVRLGV---PYIELNAQGRARPSIAQLYNWRYREL 585
           F+ L     P + +   G  R S   L+N  Y EL
Sbjct: 162 FLDLSCSPDPDLLIRTAGEKRISNFLLWNLAYTEL 196

>PHYK3_SOYBN (Q2N2K0) Probable phytol kinase 3, chloroplast precursor (EC|
           2.7.-.-)
          Length = 319

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 2   PLLL----RTVFHFPSSLRXTPQPVFTGESFEXRYACSQRLFQTS 124
           PLLL    R  FHFPS     P+P +   SF    + S   F ++
Sbjct: 28  PLLLAPTTRPTFHFPSPFLSKPKPTYLFTSFSSSSSSSSSFFSST 72

>NIFJ_ENTAG (P19543) Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)|
          Length = 1173

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 535 DPEH*VQYKGHQGEQTL*RDSGPCGCTSEKPYSSRQGVTDGDHQLKCN 392
           +P++    KG Q EQ L   SG CG   E PY+       GD  +  N
Sbjct: 787 NPQNKFTVKGSQFEQPLLEFSGACGGCGETPYAKLVTQLFGDRMMIAN 834


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,827,632
Number of Sequences: 219361
Number of extensions: 1696478
Number of successful extensions: 4384
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4379
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)