Clone Information

BLAST Search Result

Clone Name	baale11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC103551.7\| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom...	700	0.0
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	700	0.0
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	700	0.0
4	dbj\|AK110991.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	700	0.0
5	ref\|NM_179966.1\| Arabidopsis thaliana unknown protein AT2G38770 ...	262	1e-66
6	gb\|AY099864.1\| Arabidopsis thaliana unknown protein (At2g38770) ...	262	1e-66
7	gb\|AC005499.3\| Arabidopsis thaliana chromosome 2 clone T6A23 map...	262	1e-66
8	gb\|AC151709.9\| Medicago truncatula clone mth2-31g22, complete se...	155	2e-34
9	ref\|XM_535425.2\| PREDICTED: Canis familiaris similar to aquarius...	56	2e-04
10	dbj\|AK110425.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
11	ref\|XM_617610.2\| PREDICTED: Bos taurus similar to aquarius (LOC5...	48	0.037
12	ref\|XM_777841.1\| PREDICTED: Strongylocentrotus purpuratus simila...	48	0.037
13	gb\|AC102417.11\| Mus musculus chromosome 3, clone RP24-499J8, com...	42	2.3
14	gb\|AC121148.8\| Mus musculus chromosome 3, clone RP24-369K4, comp...	42	2.3
15	ref\|XM_691807.1\| PREDICTED: Danio rerio similar to aquarius (LOC...	42	2.3
16	gb\|AC107839.14\| Mus musculus chromosome 7, clone RP23-284K1, com...	40	9.0
17	gb\|AY740030.1\| Saccharomyces kudriavzevii IFO 1802 SUR7 gene, co...	40	9.0
18	gb\|AC146094.2\| Pan troglodytes BAC clone RP43-48M18 from 7, comp...	40	9.0
19	gb\|DQ329283.1\| Rattus norvegicus placental lactogen I beta mRNA,...	40	9.0
20	gb\|DQ329282.1\| Rattus norvegicus placental lactogen I alpha mRNA...	40	9.0
21	gb\|AC117670.15\| Mus musculus chromosome 7, clone RP23-383P11, co...	40	9.0
22	emb\|AL360170.23\| Human DNA sequence from clone RP11-131N13 on ch...	40	9.0
23	emb\|AL356261.23\| Human DNA sequence from clone RP11-49J3 on chro...	40	9.0
24	emb\|AL353136.21\| Human DNA sequence from clone RP11-133K18 on ch...	40	9.0
25	emb\|AL121930.13\|HS1046E21 Human DNA sequence from clone RP5-1046...	40	9.0
26	gb\|AC183687.3\| Pan troglodytes BAC clone CH251-25N14 from chromo...	40	9.0
27	emb\|CR589902.3\| Human DNA sequence from clone WI2-1896O14 on chr...	40	9.0
28	gb\|AC120104.4\| Homo sapiens 12 BAC RP11-638F21 (Roswell Park Can...	40	9.0
29	gb\|AC105026.4\| Homo sapiens chromosome 8, clone CTD-2152D24, com...	40	9.0
30	gb\|AC091967.3\| Homo sapiens chromosome 5 clone RP11-489I4, compl...	40	9.0
31	gb\|AC012607.8\| Homo sapiens chromosome 5 clone CTC-501N16, compl...	40	9.0
32	gb\|AC016620.7\| Homo sapiens chromosome 5 clone CTD-2318A17, comp...	40	9.0
33	dbj\|AK040648.1\| Mus musculus adult male aorta and vein cDNA, RIK...	40	9.0
34	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
35	gb\|AC073533.19\| Homo sapiens X BAC RP11-589J20 (Roswell Park Can...	40	9.0
36	ref\|XM_345418.2\| PREDICTED: Rattus norvegicus aquarius (predicte...	40	9.0
37	emb\|AL954172.9\| Zebrafish DNA sequence from clone CH211-220D9 in...	40	9.0
38	dbj\|AP005465.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
39	emb\|AL845360.10\| Mouse DNA sequence from clone RP23-421L7 on chr...	40	9.0
40	emb\|AJ012381.1\|FRU012381 Fugu rubripes partial rara gene, exon 3...	40	9.0
41	emb\|AL158059.3\|CNS01RGK Human chromosome 14 DNA sequence BAC C-2...	40	9.0
42	dbj\|AP001091.5\| Homo sapiens genomic DNA, chromosome 18p clone:R...	40	9.0

>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
             sequence
          Length = 137709

 Score =  700 bits (353), Expect = 0.0
 Identities = 532/589 (90%), Gaps = 2/589 (0%)
 Strand = Plus / Minus

                                                                         
Query: 68    actggtgagtccttcgagnaaagatatgcatgcagccaacggttgtttcaaacatctttc 127
             |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 81907 actggtgagtcctttgag-aaagatatgcatgcagccaaaggttgtttcaaacatctttt 81849

                                                                         
Query: 128   tacgatattccaagnagctggaagagtgcagggcttttgagttacttaagtcaacagctg 187
              || ||||| |||| |||||||||| || |||||||||||| |||||||||||||||| |
Sbjct: 81848 gacaatatttcaag-agctggaagaatgtagggcttttgagctacttaagtcaacagcag 81790

                                                                         
Query: 188   agcgagcaaattatctaatgactaaacaagctaagattgttgccatgacttgtactcatg 247
             || | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 81789 agagggcaaattatctaatgaccaaacaagccaagattgttgccatgacttgtactcatg 81730

                                                                         
Query: 248   cagccttgaagagaagagactttcttcaattgggtttcaaatatgataatttactgatgg 307
             | || |||||||| |||||||||||||| || || |||||||| |||||||| |||||||
Sbjct: 81729 cggcattgaagaggagagactttcttcagttagggttcaaatacgataatttgctgatgg 81670

                                                                         
Query: 308   aagaaagtgcacagatattggagatagagacttttataccaactctcctgcaacggcagg 367
             ||||||||||||||||||| |||||||||||||| ||||| |  || |||||||||||||
Sbjct: 81669 aagaaagtgcacagatattagagatagagactttcataccgatgctgctgcaacggcagg 81610

                                                                         
Query: 368   aagatggttatgctcgtctcaaacgttgcattttaattggtgatcaccatcagttacccc 427
             ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81609 aagatggctatgctcgtctgaaacgttgcattttaattggtgatcaccatcagttacccc 81550

                                                                         
Query: 428   ctgtcgtgaagaatatggcttttcagaagtacagccacatggaccagagtctcttcacaa 487
             ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 81549 ctgtcgtgaagaacatggcttttcagaagtacagccacatggaccaaagtctctttacaa 81490

                                                                         
Query: 488   ggtttgttcgccttggtgtcccttatattgaactcaatgctcagggtcgtgccagaccta 547
             | |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 81489 gatttgttcgtcttggtgtcccttacattgagctcaatgctcaggggcgtgccagaccta 81430

                                                                         
Query: 548   gtattgctcagctttataattggagatacagagaactgggagatctgccttatgtacatg 607
             | || ||  | || ||||| ||||||||||||||||| |||||||| ||||| || | ||
Sbjct: 81429 gcatcgccgaactatataactggagatacagagaacttggagatctaccttacgtccgtg 81370

                                                              
Query: 608   aggaagctatattccataaagctaattctgggttctcttatgagtatca 656
             |||| ||||| ||||| |||||||||||||| ||||||||||| |||||
Sbjct: 81369 aggaggctatcttccacaaagctaattctggcttctcttatgactatca 81321

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  700 bits (353), Expect = 0.0
 Identities = 532/589 (90%), Gaps = 2/589 (0%)
 Strand = Plus / Plus

                                                                            
Query: 68       actggtgagtccttcgagnaaagatatgcatgcagccaacggttgtttcaaacatctttc 127
                |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 15255441 actggtgagtcctttgag-aaagatatgcatgcagccaaaggttgtttcaaacatctttt 15255499

                                                                            
Query: 128      tacgatattccaagnagctggaagagtgcagggcttttgagttacttaagtcaacagctg 187
                 || ||||| |||| |||||||||| || |||||||||||| |||||||||||||||| |
Sbjct: 15255500 gacaatatttcaag-agctggaagaatgtagggcttttgagctacttaagtcaacagcag 15255558

                                                                            
Query: 188      agcgagcaaattatctaatgactaaacaagctaagattgttgccatgacttgtactcatg 247
                || | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 15255559 agagggcaaattatctaatgaccaaacaagccaagattgttgccatgacttgtactcatg 15255618

                                                                            
Query: 248      cagccttgaagagaagagactttcttcaattgggtttcaaatatgataatttactgatgg 307
                | || |||||||| |||||||||||||| || || |||||||| |||||||| |||||||
Sbjct: 15255619 cggcattgaagaggagagactttcttcagttagggttcaaatacgataatttgctgatgg 15255678

                                                                            
Query: 308      aagaaagtgcacagatattggagatagagacttttataccaactctcctgcaacggcagg 367
                ||||||||||||||||||| |||||||||||||| ||||| |  || |||||||||||||
Sbjct: 15255679 aagaaagtgcacagatattagagatagagactttcataccgatgctgctgcaacggcagg 15255738

                                                                            
Query: 368      aagatggttatgctcgtctcaaacgttgcattttaattggtgatcaccatcagttacccc 427
                ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15255739 aagatggctatgctcgtctgaaacgttgcattttaattggtgatcaccatcagttacccc 15255798

                                                                            
Query: 428      ctgtcgtgaagaatatggcttttcagaagtacagccacatggaccagagtctcttcacaa 487
                ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 15255799 ctgtcgtgaagaacatggcttttcagaagtacagccacatggaccaaagtctctttacaa 15255858

                                                                            
Query: 488      ggtttgttcgccttggtgtcccttatattgaactcaatgctcagggtcgtgccagaccta 547
                | |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 15255859 gatttgttcgtcttggtgtcccttacattgagctcaatgctcaggggcgtgccagaccta 15255918

                                                                            
Query: 548      gtattgctcagctttataattggagatacagagaactgggagatctgccttatgtacatg 607
                | || ||  | || ||||| ||||||||||||||||| |||||||| ||||| || | ||
Sbjct: 15255919 gcatcgccgaactatataactggagatacagagaacttggagatctaccttacgtccgtg 15255978

                                                                 
Query: 608      aggaagctatattccataaagctaattctgggttctcttatgagtatca 656
                |||| ||||| ||||| |||||||||||||| ||||||||||| |||||
Sbjct: 15255979 aggaggctatcttccacaaagctaattctggcttctcttatgactatca 15256027

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  700 bits (353), Expect = 0.0
 Identities = 532/589 (90%), Gaps = 2/589 (0%)
 Strand = Plus / Plus

                                                                            
Query: 68       actggtgagtccttcgagnaaagatatgcatgcagccaacggttgtttcaaacatctttc 127
                |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 15249975 actggtgagtcctttgag-aaagatatgcatgcagccaaaggttgtttcaaacatctttt 15250033

                                                                            
Query: 128      tacgatattccaagnagctggaagagtgcagggcttttgagttacttaagtcaacagctg 187
                 || ||||| |||| |||||||||| || |||||||||||| |||||||||||||||| |
Sbjct: 15250034 gacaatatttcaag-agctggaagaatgtagggcttttgagctacttaagtcaacagcag 15250092

                                                                            
Query: 188      agcgagcaaattatctaatgactaaacaagctaagattgttgccatgacttgtactcatg 247
                || | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 15250093 agagggcaaattatctaatgaccaaacaagccaagattgttgccatgacttgtactcatg 15250152

                                                                            
Query: 248      cagccttgaagagaagagactttcttcaattgggtttcaaatatgataatttactgatgg 307
                | || |||||||| |||||||||||||| || || |||||||| |||||||| |||||||
Sbjct: 15250153 cggcattgaagaggagagactttcttcagttagggttcaaatacgataatttgctgatgg 15250212

                                                                            
Query: 308      aagaaagtgcacagatattggagatagagacttttataccaactctcctgcaacggcagg 367
                ||||||||||||||||||| |||||||||||||| ||||| |  || |||||||||||||
Sbjct: 15250213 aagaaagtgcacagatattagagatagagactttcataccgatgctgctgcaacggcagg 15250272

                                                                            
Query: 368      aagatggttatgctcgtctcaaacgttgcattttaattggtgatcaccatcagttacccc 427
                ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15250273 aagatggctatgctcgtctgaaacgttgcattttaattggtgatcaccatcagttacccc 15250332

                                                                            
Query: 428      ctgtcgtgaagaatatggcttttcagaagtacagccacatggaccagagtctcttcacaa 487
                ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 15250333 ctgtcgtgaagaacatggcttttcagaagtacagccacatggaccaaagtctctttacaa 15250392

                                                                            
Query: 488      ggtttgttcgccttggtgtcccttatattgaactcaatgctcagggtcgtgccagaccta 547
                | |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 15250393 gatttgttcgtcttggtgtcccttacattgagctcaatgctcaggggcgtgccagaccta 15250452

                                                                            
Query: 548      gtattgctcagctttataattggagatacagagaactgggagatctgccttatgtacatg 607
                | || ||  | || ||||| ||||||||||||||||| |||||||| ||||| || | ||
Sbjct: 15250453 gcatcgccgaactatataactggagatacagagaacttggagatctaccttacgtccgtg 15250512

                                                                 
Query: 608      aggaagctatattccataaagctaattctgggttctcttatgagtatca 656
                |||| ||||| ||||| |||||||||||||| ||||||||||| |||||
Sbjct: 15250513 aggaggctatcttccacaaagctaattctggcttctcttatgactatca 15250561

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>dbj|AK110991.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D10, full
           insert sequence
          Length = 2358

 Score =  700 bits (353), Expect = 0.0
 Identities = 532/589 (90%), Gaps = 2/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 68  actggtgagtccttcgagnaaagatatgcatgcagccaacggttgtttcaaacatctttc 127
           |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 239 actggtgagtcctttgag-aaagatatgcatgcagccaaaggttgtttcaaacatctttt 297

                                                                       
Query: 128 tacgatattccaagnagctggaagagtgcagggcttttgagttacttaagtcaacagctg 187
            || ||||| |||| |||||||||| || |||||||||||| |||||||||||||||| |
Sbjct: 298 gacaatatttcaag-agctggaagaatgtagggcttttgagctacttaagtcaacagcag 356

                                                                       
Query: 188 agcgagcaaattatctaatgactaaacaagctaagattgttgccatgacttgtactcatg 247
           || | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 357 agagggcaaattatctaatgaccaaacaagccaagattgttgccatgacttgtactcatg 416

                                                                       
Query: 248 cagccttgaagagaagagactttcttcaattgggtttcaaatatgataatttactgatgg 307
           | || |||||||| |||||||||||||| || || |||||||| |||||||| |||||||
Sbjct: 417 cggcattgaagaggagagactttcttcagttagggttcaaatacgataatttgctgatgg 476

                                                                       
Query: 308 aagaaagtgcacagatattggagatagagacttttataccaactctcctgcaacggcagg 367
           ||||||||||||||||||| |||||||||||||| ||||| |  || |||||||||||||
Sbjct: 477 aagaaagtgcacagatattagagatagagactttcataccgatgctgctgcaacggcagg 536

                                                                       
Query: 368 aagatggttatgctcgtctcaaacgttgcattttaattggtgatcaccatcagttacccc 427
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aagatggctatgctcgtctgaaacgttgcattttaattggtgatcaccatcagttacccc 596

                                                                       
Query: 428 ctgtcgtgaagaatatggcttttcagaagtacagccacatggaccagagtctcttcacaa 487
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 597 ctgtcgtgaagaacatggcttttcagaagtacagccacatggaccaaagtctctttacaa 656

                                                                       
Query: 488 ggtttgttcgccttggtgtcccttatattgaactcaatgctcagggtcgtgccagaccta 547
           | |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 657 gatttgttcgtcttggtgtcccttacattgagctcaatgctcaggggcgtgccagaccta 716

                                                                       
Query: 548 gtattgctcagctttataattggagatacagagaactgggagatctgccttatgtacatg 607
           | || ||  | || ||||| ||||||||||||||||| |||||||| ||||| || | ||
Sbjct: 717 gcatcgccgaactatataactggagatacagagaacttggagatctaccttacgtccgtg 776

                                                            
Query: 608 aggaagctatattccataaagctaattctgggttctcttatgagtatca 656
           |||| ||||| ||||| |||||||||||||| ||||||||||| |||||
Sbjct: 777 aggaggctatcttccacaaagctaattctggcttctcttatgactatca 825

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>ref|NM_179966.1| Arabidopsis thaliana unknown protein AT2G38770 mRNA, complete cds
          Length = 4837

 Score =  262 bits (132), Expect = 1e-66
 Identities = 324/388 (83%)
 Strand = Plus / Plus

                                                                        
Query: 143  agctggaagagtgcagggcttttgagttacttaagtcaacagctgagcgagcaaattatc 202
            |||| |||||||| ||||| |||||  |||| |||||||| |||||  ||||||||||||
Sbjct: 3288 agctagaagagtgtagggcctttgaactactcaagtcaactgctgatagagcaaattatc 3347

                                                                        
Query: 203  taatgactaaacaagctaagattgttgccatgacttgtactcatgcagccttgaagagaa 262
            | ||||| |||||||| |||||||| || ||||| ||||||||||| || || ||||| |
Sbjct: 3348 tgatgaccaaacaagcaaagattgtagcaatgacgtgtactcatgctgcattaaagagga 3407

                                                                        
Query: 263  gagactttcttcaattgggtttcaaatatgataatttactgatggaagaaagtgcacaga 322
            |||| |||||||| || || |||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 3408 gagattttcttcagttagggttcaaatatgataacttattgatggaagaaagtgctcaga 3467

                                                                        
Query: 323  tattggagatagagacttttataccaactctcctgcaacggcaggaagatggttatgctc 382
            | ||||| || |||||||| |||||||  || || ||  |||| ||||||||| |||| |
Sbjct: 3468 ttttggaaattgagactttcataccaatgctgcttcagaggcaagaagatggtcatgcac 3527

                                                                        
Query: 383  gtctcaaacgttgcattttaattggtgatcaccatcagttaccccctgtcgtgaagaata 442
            | ||||| || || || || |||||||||||||| ||| | || || || ||||||||||
Sbjct: 3528 gactcaagcgctgtatattgattggtgatcaccaccagctgcctcccgtggtgaagaata 3587

                                                                        
Query: 443  tggcttttcagaagtacagccacatggaccagagtctcttcacaaggtttgttcgccttg 502
            ||||||| ||||| || || |||||||| |||||| | || || ||||||||||| ||||
Sbjct: 3588 tggctttccagaaatatagtcacatggatcagagtttgtttacgaggtttgttcgtcttg 3647

                                        
Query: 503  gtgtcccttatattgaactcaatgctca 530
            || | ||||||||||| |||||||||||
Sbjct: 3648 gtattccttatattgagctcaatgctca 3675

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>gb|AY099864.1| Arabidopsis thaliana unknown protein (At2g38770) mRNA, complete cds
          Length = 4828

 Score =  262 bits (132), Expect = 1e-66
 Identities = 324/388 (83%)
 Strand = Plus / Plus

                                                                        
Query: 143  agctggaagagtgcagggcttttgagttacttaagtcaacagctgagcgagcaaattatc 202
            |||| |||||||| ||||| |||||  |||| |||||||| |||||  ||||||||||||
Sbjct: 3288 agctagaagagtgtagggcctttgaactactcaagtcaactgctgatagagcaaattatc 3347

                                                                        
Query: 203  taatgactaaacaagctaagattgttgccatgacttgtactcatgcagccttgaagagaa 262
            | ||||| |||||||| |||||||| || ||||| ||||||||||| || || ||||| |
Sbjct: 3348 tgatgaccaaacaagcaaagattgtagcaatgacgtgtactcatgctgcattaaagagga 3407

                                                                        
Query: 263  gagactttcttcaattgggtttcaaatatgataatttactgatggaagaaagtgcacaga 322
            |||| |||||||| || || |||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 3408 gagattttcttcagttagggttcaaatatgataacttattgatggaagaaagtgctcaga 3467

                                                                        
Query: 323  tattggagatagagacttttataccaactctcctgcaacggcaggaagatggttatgctc 382
            | ||||| || |||||||| |||||||  || || ||  |||| ||||||||| |||| |
Sbjct: 3468 ttttggaaattgagactttcataccaatgctgcttcagaggcaagaagatggtcatgcac 3527

                                                                        
Query: 383  gtctcaaacgttgcattttaattggtgatcaccatcagttaccccctgtcgtgaagaata 442
            | ||||| || || || || |||||||||||||| ||| | || || || ||||||||||
Sbjct: 3528 gactcaagcgctgtatattgattggtgatcaccaccagctgcctcccgtggtgaagaata 3587

                                                                        
Query: 443  tggcttttcagaagtacagccacatggaccagagtctcttcacaaggtttgttcgccttg 502
            ||||||| ||||| || || |||||||| |||||| | || || ||||||||||| ||||
Sbjct: 3588 tggctttccagaaatatagtcacatggatcagagtttgtttacgaggtttgttcgtcttg 3647

                                        
Query: 503  gtgtcccttatattgaactcaatgctca 530
            || | ||||||||||| |||||||||||
Sbjct: 3648 gtattccttatattgagctcaatgctca 3675

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>gb|AC005499.3| Arabidopsis thaliana chromosome 2 clone T6A23 map ve018, complete
             sequence
          Length = 107541

 Score =  262 bits (132), Expect = 1e-66
 Identities = 324/388 (83%)
 Strand = Plus / Plus

                                                                         
Query: 143   agctggaagagtgcagggcttttgagttacttaagtcaacagctgagcgagcaaattatc 202
             |||| |||||||| ||||| |||||  |||| |||||||| |||||  ||||||||||||
Sbjct: 12337 agctagaagagtgtagggcctttgaactactcaagtcaactgctgatagagcaaattatc 12396

                                                                         
Query: 203   taatgactaaacaagctaagattgttgccatgacttgtactcatgcagccttgaagagaa 262
             | ||||| |||||||| |||||||| || ||||| ||||||||||| || || ||||| |
Sbjct: 12397 tgatgaccaaacaagcaaagattgtagcaatgacgtgtactcatgctgcattaaagagga 12456

                                                                         
Query: 263   gagactttcttcaattgggtttcaaatatgataatttactgatggaagaaagtgcacaga 322
             |||| |||||||| || || |||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 12457 gagattttcttcagttagggttcaaatatgataacttattgatggaagaaagtgctcaga 12516

                                                                         
Query: 323   tattggagatagagacttttataccaactctcctgcaacggcaggaagatggttatgctc 382
             | ||||| || |||||||| |||||||  || || ||  |||| ||||||||| |||| |
Sbjct: 12517 ttttggaaattgagactttcataccaatgctgcttcagaggcaagaagatggtcatgcac 12576

                                                                         
Query: 383   gtctcaaacgttgcattttaattggtgatcaccatcagttaccccctgtcgtgaagaata 442
             | ||||| || || || || |||||||||||||| ||| | || || || ||||||||||
Sbjct: 12577 gactcaagcgctgtatattgattggtgatcaccaccagctgcctcccgtggtgaagaata 12636

                                                                         
Query: 443   tggcttttcagaagtacagccacatggaccagagtctcttcacaaggtttgttcgccttg 502
             ||||||| ||||| || || |||||||| |||||| | || || ||||||||||| ||||
Sbjct: 12637 tggctttccagaaatatagtcacatggatcagagtttgtttacgaggtttgttcgtcttg 12696

                                         
Query: 503   gtgtcccttatattgaactcaatgctca 530
             || | ||||||||||| |||||||||||
Sbjct: 12697 gtattccttatattgagctcaatgctca 12724

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>gb|AC151709.9| Medicago truncatula clone mth2-31g22, complete sequence
          Length = 116699

 Score =  155 bits (78), Expect = 2e-34
 Identities = 375/474 (79%)
 Strand = Plus / Plus

                                                                          
Query: 148    gaagagtgcagggcttttgagttacttaagtcaacagctgagcgagcaaattatctaatg 207
              ||||||||| |||||||||| ||||| ||||||||||| ||  |||| || ||  |||||
Sbjct: 104155 gaagagtgccgggcttttgaattactgaagtcaacagcagacagagctaactacttaatg 104214

                                                                          
Query: 208    actaaacaagctaagattgttgccatgacttgtactcatgcagccttgaagagaagagac 267
              ||||| || ||||||||||| || ||||||||||| ||||| ||  | ||||| | ||| 
Sbjct: 104215 actaagcaggctaagattgtggcaatgacttgtacccatgccgctctaaagaggaaagat 104274

                                                                          
Query: 268    tttcttcaattgggtttcaaatatgataatttactgatggaagaaagtgcacagatattg 327
              || |||||  | ||||| || |||||||| ||  |||||||||||||||| || || || 
Sbjct: 104275 ttccttcagctaggttttaagtatgataacttgttgatggaagaaagtgcccaaatttta 104334

                                                                          
Query: 328    gagatagagacttttataccaactctcctgcaacggcaggaagatggttatgctcgtctc 387
              || || |||||||| || ||||   | || ||  ||||||| |||||  | || || || 
Sbjct: 104335 gaaattgagactttcattccaatgttactccagaggcaggaggatggccacgcacggctt 104394

                                                                          
Query: 388    aaacgttgcattttaattggtgatcaccatcagttaccccctgtcgtgaagaatatggct 447
              ||||| |||||| ||||||||||||| || ||  | || ||||| ||||| |||||||||
Sbjct: 104395 aaacgctgcattctaattggtgatcatcaccaactgcctcctgttgtgaaaaatatggct 104454

                                                                          
Query: 448    tttcagaagtacagccacatggaccagagtctcttcacaaggtttgttcgccttggtgtc 507
              || || |||||||||||||||||||||||  | || || |||||||| || || ||  | 
Sbjct: 104455 ttccaaaagtacagccacatggaccagagcttatttaccaggtttgtccgtctgggcatt 104514

                                                                          
Query: 508    ccttatattgaactcaatgctcagggtcgtgccagacctagtattgctcagctttataat 567
              ||||| |||||||| |||||||| ||  | ||||| || ||||| ||  | ||||| || 
Sbjct: 104515 ccttacattgaactaaatgctcaaggaagagccaggccaagtatagccaaactttacaac 104574

                                                                    
Query: 568    tggagatacagagaactgggagatctgccttatgtacatgaggaagctatattc 621
              ||||||||||||||  ||||||| || |||| | || | |||||||| ||||||
Sbjct: 104575 tggagatacagagacttgggagaccttccttttctaaaggaggaagcaatattc 104628

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>ref|XM_535425.2| PREDICTED: Canis familiaris similar to aquarius (LOC478251), mRNA
          Length = 2272

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                    
Query: 403  attggtgatcaccatcagttaccccctgtcgtgaagaatatggcttttcagaagta 458
            ||||||||||| || |||||||| || ||| | ||||||||||| |||||||||||
Sbjct: 1029 attggtgatcatcaccagttacctccagtcattaagaatatggcctttcagaagta 1084



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 304 atggaagaaagtgcacagatattggagatagagacttttatacc 347
           |||||||||  |||||||||  |||||||||| |||||||||||
Sbjct: 930 atggaagaagctgcacagattctggagatagaaacttttatacc 973

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>dbj|AK110425.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-A12, full
            insert sequence
          Length = 2754

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                        
Query: 403  attggtgatcaccatcagttaccccctgtcgtgaagaatatggcttttcagaagtacagc 462
            |||||||| ||||| ||| | ||||| || ||| |||| ||||| || ||||||||||||
Sbjct: 931  attggtgaccaccaccagctgcccccggtggtgcagaacatggccttccagaagtacagc 990

                       
Query: 463  cacatggacca 473
            ||| |||||||
Sbjct: 991  cacctggacca 1001

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>ref|XM_617610.2| PREDICTED: Bos taurus similar to aquarius (LOC537445), mRNA
          Length = 4202

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 403  attggtgatcaccatcagttaccccctgtcgtgaagaatatggcttttcagaagta 458
            ||||||||||| || |||||||| || ||| | ||||| ||||| |||||||||||
Sbjct: 2784 attggtgatcatcaccagttacctccagtcattaagaacatggcctttcagaagta 2839

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>ref|XM_777841.1| PREDICTED: Strongylocentrotus purpuratus similar to aquarius
            (LOC577627), mRNA
          Length = 4546

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 406  ggtgatcaccatcagttaccccctgtcgtgaagaatatggcttttcagaagt 457
            ||||||||||||||| | || |||||| | ||||| ||||| ||||||||||
Sbjct: 3235 ggtgatcaccatcagcttccacctgtcatcaagaacatggcctttcagaagt 3286

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>gb|AC102417.11| Mus musculus chromosome 3, clone RP24-499J8, complete sequence
          Length = 161101

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     gttttccattttccaagttct 40
              |||||||||||||||||||||
Sbjct: 119495 gttttccattttccaagttct 119475

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>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    gttttccattttccaagttct 40
             |||||||||||||||||||||
Sbjct: 73764 gttttccattttccaagttct 73744

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>ref|XM_691807.1| PREDICTED: Danio rerio similar to aquarius (LOC568477), mRNA
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 403 attggtgatcaccatcagttaccccctgtcgtgaagaatatggcttttcagaa 455
           ||||| |||||||||||| | || |||||| | ||||| ||||| ||||||||
Sbjct: 460 attggagatcaccatcagcttcctcctgtcattaagaacatggcctttcagaa 512

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>gb|AC107839.14| Mus musculus chromosome 7, clone RP23-284K1, complete sequence
          Length = 170751

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gaagagaagagactttcttc 274
             ||||||||||||||||||||
Sbjct: 11254 gaagagaagagactttcttc 11235

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>gb|AY740030.1| Saccharomyces kudriavzevii IFO 1802 SUR7 gene, complete cds; GAL80
            pseudogene, complete sequence; and YML050W gene, complete
            cds
          Length = 3639

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   ttttccattttccaagttct 40
            ||||||||||||||||||||
Sbjct: 3508 ttttccattttccaagttct 3489

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>gb|AC146094.2| Pan troglodytes BAC clone RP43-48M18 from 7, complete sequence
          Length = 192766

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aagatatgcatgcagccaac 107
              ||||||||||||||||||||
Sbjct: 179557 aagatatgcatgcagccaac 179576

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>gb|DQ329283.1| Rattus norvegicus placental lactogen I beta mRNA, complete cds
          Length = 921

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 agaagagactttcttcaatt 278
           ||||||||||||||||||||
Sbjct: 895 agaagagactttcttcaatt 876

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>gb|DQ329282.1| Rattus norvegicus placental lactogen I alpha mRNA, complete cds
          Length = 921

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 agaagagactttcttcaatt 278
           ||||||||||||||||||||
Sbjct: 895 agaagagactttcttcaatt 876

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>gb|AC117670.15| Mus musculus chromosome 7, clone RP23-383P11, complete sequence
          Length = 219661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gaagagaagagactttcttc 274
             ||||||||||||||||||||
Sbjct: 55884 gaagagaagagactttcttc 55903

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>emb|AL360170.23| Human DNA sequence from clone RP11-131N13 on chromosome 10 Contains the
             5' end of the gene for Ste20-related serine/threonine
             kinase (SLK) and a CpG island, complete sequence
          Length = 60252

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aagatatgcatgcagccaac 107
             ||||||||||||||||||||
Sbjct: 17465 aagatatgcatgcagccaac 17484

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>emb|AL356261.23| Human DNA sequence from clone RP11-49J3 on chromosome 1 Contains part
             of the  NPHP4 gene for nephronophthisis 4, complete
             sequence
          Length = 100302

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   gagtgcagggcttttgagtt 170
             ||||||||||||||||||||
Sbjct: 30050 gagtgcagggcttttgagtt 30031

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>emb|AL353136.21| Human DNA sequence from clone RP11-133K18 on chromosome X Contains a
              pyruvate kinase muscle (PKM2) pseudogene and the gene for
              ectodysplasin A2 isoform receptor (XEDAR), complete
              sequence
          Length = 192505

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     aagatatgcatgcagccaac 107
              ||||||||||||||||||||
Sbjct: 185500 aagatatgcatgcagccaac 185481

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>emb|AL121930.13|HS1046E21 Human DNA sequence from clone RP5-1046E21 on chromosome 6q14.1-14.3,
             complete sequence
          Length = 135434

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   aattggagatacagagaact 584
             ||||||||||||||||||||
Sbjct: 50706 aattggagatacagagaact 50725

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>gb|AC183687.3| Pan troglodytes BAC clone CH251-25N14 from chromosome 1, complete
            sequence
          Length = 192054

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 619  ttccataaagctaattctgggttctctt 646
            ||||||| |||| |||||||||||||||
Sbjct: 1110 ttccatacagctgattctgggttctctt 1083

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>emb|CR589902.3| Human DNA sequence from clone WI2-1896O14 on chromosome 1, complete
             sequence
          Length = 38311

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 619   ttccataaagctaattctgggttctctt 646
             ||||||| |||| |||||||||||||||
Sbjct: 18437 ttccatacagctgattctgggttctctt 18410

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>gb|AC120104.4| Homo sapiens 12 BAC RP11-638F21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   aagctaattctgggttctct 645
             ||||||||||||||||||||
Sbjct: 39922 aagctaattctgggttctct 39903

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>gb|AC105026.4| Homo sapiens chromosome 8, clone CTD-2152D24, complete sequence
          Length = 121171

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    aagatatgcatgcagccaac 107
             ||||||||||||||||||||
Sbjct: 74209 aagatatgcatgcagccaac 74190

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>gb|AC091967.3| Homo sapiens chromosome 5 clone RP11-489I4, complete sequence
          Length = 187245

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gaagagaagagactttcttc 274
             ||||||||||||||||||||
Sbjct: 15400 gaagagaagagactttcttc 15419

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>gb|AC012607.8| Homo sapiens chromosome 5 clone CTC-501N16, complete sequence
          Length = 106013

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gaagagaagagactttcttc 274
             ||||||||||||||||||||
Sbjct: 53531 gaagagaagagactttcttc 53512

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>gb|AC016620.7| Homo sapiens chromosome 5 clone CTD-2318A17, complete sequence
          Length = 129856

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tttcaaatatgataatttac 301
             ||||||||||||||||||||
Sbjct: 59020 tttcaaatatgataatttac 59001

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>dbj|AK040648.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530006E07
            product:unclassifiable, full insert sequence
          Length = 3450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  tatggcttttcagaagtaca 460
            ||||||||||||||||||||
Sbjct: 2793 tatggcttttcagaagtaca 2774

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 238      tgtactcatgcagccttgaa 257
                ||||||||||||||||||||
Sbjct: 17650407 tgtactcatgcagccttgaa 17650426

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>gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 182056

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 275   aattgggtttcaaatatgataatttact 302
             |||||||||| ||||| |||||||||||
Sbjct: 64080 aattgggttttaaataagataatttact 64107

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>ref|XM_345418.2| PREDICTED: Rattus norvegicus aquarius (predicted) (Aqr_predicted),
            mRNA
          Length = 6843

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 403  attggtgatcaccatcagttaccccctgtcgtgaagaatatggcttttcagaagta 458
            |||||||||||||| || || || || ||| | ||||| ||||| |||||||||||
Sbjct: 5668 attggtgatcaccaccaattgcctccagtcattaagaacatggcctttcagaagta 5723

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>emb|AL954172.9| Zebrafish DNA sequence from clone CH211-220D9 in linkage group 8,
            complete sequence
          Length = 201525

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tcatgcagccttgaagagaa 262
            ||||||||||||||||||||
Sbjct: 2401 tcatgcagccttgaagagaa 2420

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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   tgtactcatgcagccttgaa 257
             ||||||||||||||||||||
Sbjct: 54440 tgtactcatgcagccttgaa 54459

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>emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chromosome 2, complete
             sequence
          Length = 196651

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   tatggcttttcagaagtaca 460
             ||||||||||||||||||||
Sbjct: 45024 tatggcttttcagaagtaca 45043

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>emb|AJ012381.1|FRU012381 Fugu rubripes partial rara gene, exon 3 (and joined CDS alpha-2
            isoform)
          Length = 6401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 429  tgtcgtgaagaatatggctt 448
            ||||||||||||||||||||
Sbjct: 2953 tgtcgtgaagaatatggctt 2972

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>emb|AL158059.3|CNS01RGK Human chromosome 14 DNA sequence BAC C-2007A10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 148515

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aagatatgcatgcagccaac 107
             ||||||||||||||||||||
Sbjct: 72748 aagatatgcatgcagccaac 72767

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>dbj|AP001091.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-713N19, complete
             sequences
          Length = 207785

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   cttttgagttacttaagtcaacag 184
             ||||||||||||| ||||||||||
Sbjct: 98395 cttttgagttactgaagtcaacag 98372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,282,671
Number of Sequences: 3902068
Number of extensions: 6282671
Number of successful extensions: 105177
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104957
Number of HSP's gapped (non-prelim): 207
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result