ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baale02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC127433.1| Mus musculus BAC clone RP23-151I7 from 1, complet... 42 2.1
2emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j2... 42 2.1
3gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, comp... 42 2.1
4gb|AC021694.8| Homo sapiens, clone RP11-24F3, complete sequence 42 2.1
5ref|XM_395197.2| PREDICTED: Apis mellifera similar to ENSANGP000... 42 2.1
6ref|NM_130057.2| Arabidopsis thaliana unknown protein AT2G44920 ... 40 8.5
7ref|NM_130056.4| Arabidopsis thaliana unknown protein AT2G44920 ... 40 8.5
8ref|XM_642128.1| Dictyostelium discoideum RGS domain-containing ... 40 8.5
9gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, c... 40 8.5
10ref|XM_716931.1| Candida albicans SC5314 putative cytoplasmic me... 40 8.5
11ref|XM_716771.1| Candida albicans SC5314 putative cytoplasmic me... 40 8.5
12gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, c... 40 8.5
13gb|AC105052.3| Homo sapiens BAC clone RP11-577H5 from 7, complet... 40 8.5
14gb|AC006477.4| Homo sapiens PAC clone RP4-802G15 from 7, complet... 40 8.5
15gb|AC144808.2| Mus musculus BAC clone RP24-434O1 from chromosome... 40 8.5
16gb|BT000902.1| Arabidopsis thaliana clone C105048 unknown protei... 40 8.5
17gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete seq... 40 8.5
18emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chro... 40 8.5
19gb|AY050941.2| Arabidopsis thaliana At2g44920 mRNA sequence 40 8.5
20gb|AC152419.2| Pan troglodytes BAC clone RP43-4P10 from chromoso... 40 8.5
21emb|AL596167.1| Listeria innocua Clip11262 complete genome, segm... 40 8.5
22emb|BX950214.7| Zebrafish DNA sequence from clone CH211-214C2 in... 40 8.5
23gb|AC002388.3| Arabidopsis thaliana chromosome 2 clone T13E15 ma... 40 8.5
24gb|AC005925.1| Homo sapiens 12p13.3 PAC RPCI1-41B7 (Roswell Park... 40 8.5
25ref|XM_688698.1| PREDICTED: Danio rerio similar to Shaw-related ... 40 8.5
26ref|XM_628231.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 8.5
27gb|AY033393.1| Ovis aries estrogen receptor alpha mRNA, partial cds 40 8.5
28gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome... 40 8.5
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
31emb|BX822009.1|CNS0AA4Z Arabidopsis thaliana Full-length cDNA Co... 40 8.5
32gb|AC010900.12| Homo sapiens BAC clone RP11-544H14 from 2, compl... 40 8.5
33gb|AC107057.5| Homo sapiens BAC clone RP11-554B4 from 2, complet... 40 8.5
34emb|BX571811.5| Zebrafish DNA sequence from clone CH211-194P6, c... 40 8.5
35dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
36dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
37emb|BX649532.7| Zebrafish DNA sequence from clone CH211-260H3 in... 40 8.5
38dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
39emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in... 40 8.5
40emb|AL749527.1| Zebrafish DNA sequence from clone XX-180I15 in l... 40 8.5
41gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, comp... 40 8.5
42gb|AC172110.2| Rhesus Macaque CHR7 BAC CH250-119L7 (Children's H... 40 8.5 
>gb|AC127433.1| Mus musculus BAC clone RP23-151I7 from 1, complete sequence
          Length = 228489

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 293    tgcagcagcctgcacactgctcagc 317
              |||| ||||||||||||||||||||
Sbjct: 121379 tgcaacagcctgcacactgctcagc 121403
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>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE
          Length = 126498

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 348   agtgatgatgatggttttaccaaca 372
             |||||||||| ||||||||||||||
Sbjct: 99130 agtgatgatgctggttttaccaaca 99106
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>gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, complete sequence
          Length = 191786

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 295   cagcagcctgcacactgctcagcac 319
             |||||||| ||||||||||||||||
Sbjct: 14655 cagcagccagcacactgctcagcac 14631
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>gb|AC021694.8| Homo sapiens, clone RP11-24F3, complete sequence
          Length = 149179

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 401  aatggaatttgctatttgcta 421
            |||||||||||||||||||||
Sbjct: 8999 aatggaatttgctatttgcta 9019
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>ref|XM_395197.2| PREDICTED: Apis mellifera similar to ENSANGP00000021370
           (LOC411729), mRNA
          Length = 3004

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 104 atccaccggcggccagctggg 124
           |||||||||||||||||||||
Sbjct: 951 atccaccggcggccagctggg 971
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>ref|NM_130057.2| Arabidopsis thaliana unknown protein AT2G44920 transcript variant
           AT2G44920.1 mRNA, complete cds
          Length = 1050

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 caactttgcacccttgaagt 480
           ||||||||||||||||||||
Sbjct: 398 caactttgcacccttgaagt 379
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>ref|NM_130056.4| Arabidopsis thaliana unknown protein AT2G44920 transcript variant
           AT2G44920.2 mRNA, complete cds
          Length = 1014

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 caactttgcacccttgaagt 480
           ||||||||||||||||||||
Sbjct: 398 caactttgcacccttgaagt 379
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>ref|XM_642128.1| Dictyostelium discoideum RGS domain-containing protein (DDB0229847),
            partial mRNA
          Length = 6693

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  tattaagtgatgatgatggt 362
            ||||||||||||||||||||
Sbjct: 1735 tattaagtgatgatgatggt 1716
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>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence
          Length = 203811

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ggtgttgtcttgaagccttg 48
             ||||||||||||||||||||
Sbjct: 37419 ggtgttgtcttgaagccttg 37438
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>ref|XM_716931.1| Candida albicans SC5314 putative cytoplasmic methionyl tRNA
           synthetase (CaO19_11437), mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 427 atatatttttgaaattgcac 446
           ||||||||||||||||||||
Sbjct: 872 atatatttttgaaattgcac 891
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>ref|XM_716771.1| Candida albicans SC5314 putative cytoplasmic methionyl tRNA
           synthetase (CaO19_3955), mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 427 atatatttttgaaattgcac 446
           ||||||||||||||||||||
Sbjct: 872 atatatttttgaaattgcac 891
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>gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, complete sequence
          Length = 197574

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 303   tgcacactgctcagcactgtctgc 326
             ||||||| ||||||||||||||||
Sbjct: 91038 tgcacaccgctcagcactgtctgc 91015
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>gb|AC105052.3| Homo sapiens BAC clone RP11-577H5 from 7, complete sequence
          Length = 186465

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    tgcccaactttgcacccttg 476
              ||||||||||||||||||||
Sbjct: 177621 tgcccaactttgcacccttg 177602
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>gb|AC006477.4| Homo sapiens PAC clone RP4-802G15 from 7, complete sequence
          Length = 121520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   tgcccaactttgcacccttg 476
             ||||||||||||||||||||
Sbjct: 53535 tgcccaactttgcacccttg 53516
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>gb|AC144808.2| Mus musculus BAC clone RP24-434O1 from chromosome 5, complete sequence
          Length = 152463

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tgcagcagcctgcacactgc 312
             ||||||||||||||||||||
Sbjct: 45063 tgcagcagcctgcacactgc 45082
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>gb|BT000902.1| Arabidopsis thaliana clone C105048 unknown protein (At2g44920)
           mRNA, complete cds
          Length = 664

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 caactttgcacccttgaagt 480
           ||||||||||||||||||||
Sbjct: 384 caactttgcacccttgaagt 365
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>gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete sequence
          Length = 46437

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    ttgaaggggaagaagacaca 65
             ||||||||||||||||||||
Sbjct: 41621 ttgaaggggaagaagacaca 41602
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>emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chromosome X Contains a
             MYST histone acetyltransferase 2 (MYST2) pseudogene, a
             zinc finger protein 265 (ZNF265) pseudogene and a CpG
             island, complete sequence
          Length = 116457

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    gccttgaaggggaagaagacacag 66
             ||||||||||||| ||||||||||
Sbjct: 21119 gccttgaaggggaggaagacacag 21142
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>gb|AY050941.2| Arabidopsis thaliana At2g44920 mRNA sequence
          Length = 612

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 caactttgcacccttgaagt 480
           ||||||||||||||||||||
Sbjct: 415 caactttgcacccttgaagt 396
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>gb|AC152419.2| Pan troglodytes BAC clone RP43-4P10 from chromosome 7, complete sequence
          Length = 154622

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    tgcccaactttgcacccttg 476
              ||||||||||||||||||||
Sbjct: 139671 tgcccaactttgcacccttg 139652
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>emb|AL596167.1| Listeria innocua Clip11262 complete genome, segment 5/12
          Length = 253050

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 360    ggttttaccaacaaagaaattagt 383
              |||||||| |||||||||||||||
Sbjct: 209287 ggttttacaaacaaagaaattagt 209310
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>emb|BX950214.7| Zebrafish DNA sequence from clone CH211-214C2 in linkage group 5,
              complete sequence
          Length = 197499

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    atttgctactcctatatatt 433
              ||||||||||||||||||||
Sbjct: 131378 atttgctactcctatatatt 131397
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>gb|AC002388.3| Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete
             sequence
          Length = 85534

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   caactttgcacccttgaagt 480
             ||||||||||||||||||||
Sbjct: 27691 caactttgcacccttgaagt 27710
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>gb|AC005925.1| Homo sapiens 12p13.3 PAC RPCI1-41B7 (Roswell Park Cancer Institute
            Human PAC Library) complete sequence
          Length = 40446

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  ttgcagcagcctgcacactg 311
            ||||||||||||||||||||
Sbjct: 6548 ttgcagcagcctgcacactg 6529
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>ref|XM_688698.1| PREDICTED: Danio rerio similar to Shaw-related potassium channel
           protein Raw1 (LOC565419), mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 18  tgaagccttgaggtgttgtcttga 41
           |||| |||||||||||||||||||
Sbjct: 167 tgaaaccttgaggtgttgtcttga 144
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>ref|XM_628231.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_420),
            partial mRNA
          Length = 6129

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  aatttccaagtatttctatt 346
            ||||||||||||||||||||
Sbjct: 5554 aatttccaagtatttctatt 5535
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>gb|AY033393.1| Ovis aries estrogen receptor alpha mRNA, partial cds
          Length = 5653

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  tatatatttttgaaattgca 445
            ||||||||||||||||||||
Sbjct: 3341 tatatatttttgaaattgca 3360
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>gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome 14, complete sequence
          Length = 211666

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 559    tggacatcagttggaggatt 578
              ||||||||||||||||||||
Sbjct: 148318 tggacatcagttggaggatt 148299
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 409      ttgctatttgctactcctatatat 432
                |||||| |||||||||||||||||
Sbjct: 19842952 ttgctaattgctactcctatatat 19842975
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 97       cccatcgatccaccggcggc 116
                ||||||||||||||||||||
Sbjct: 25993945 cccatcgatccaccggcggc 25993926
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>emb|BX822009.1|CNS0AA4Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL91ZH02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 971

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 caactttgcacccttgaagt 480
           ||||||||||||||||||||
Sbjct: 357 caactttgcacccttgaagt 338
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>gb|AC010900.12| Homo sapiens BAC clone RP11-544H14 from 2, complete sequence
          Length = 208024

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 419    ctactcctatatatttttgaaatt 442
              |||||||| |||||||||||||||
Sbjct: 127411 ctactcctgtatatttttgaaatt 127388
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>gb|AC107057.5| Homo sapiens BAC clone RP11-554B4 from 2, complete sequence
          Length = 87560

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    gaaggggaagaagacacagc 67
             ||||||||||||||||||||
Sbjct: 85112 gaaggggaagaagacacagc 85093
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>emb|BX571811.5| Zebrafish DNA sequence from clone CH211-194P6, complete sequence
          Length = 219044

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     tgaagccttgaggtgttgtcttga 41
              |||| |||||||||||||||||||
Sbjct: 187722 tgaaaccttgaggtgttgtcttga 187745
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>dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0506F02
          Length = 151612

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    cccatcgatccaccggcggc 116
             ||||||||||||||||||||
Sbjct: 70957 cccatcgatccaccggcggc 70938
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>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0011H09
          Length = 147992

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    cccatcgatccaccggcggc 116
             ||||||||||||||||||||
Sbjct: 27507 cccatcgatccaccggcggc 27488
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>emb|BX649532.7| Zebrafish DNA sequence from clone CH211-260H3 in linkage group 20,
             complete sequence
          Length = 159939

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    tgaagccttgaggtgttgtcttga 41
             |||| |||||||||||||||||||
Sbjct: 62321 tgaaaccttgaggtgttgtcttga 62298
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>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0034B12
          Length = 124083

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttgctatttgctactcctatatat 432
             |||||| |||||||||||||||||
Sbjct: 67392 ttgctaattgctactcctatatat 67415
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>emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in linkage group 25,
             complete sequence
          Length = 236784

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    tgaagccttgaggtgttgtcttga 41
             |||| |||||||||||||||||||
Sbjct: 21388 tgaaaccttgaggtgttgtcttga 21365
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>emb|AL749527.1| Zebrafish DNA sequence from clone XX-180I15 in linkage group 9,
             complete sequence
          Length = 61817

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   cttccggattttcagagaca 522
             ||||||||||||||||||||
Sbjct: 18241 cttccggattttcagagaca 18222
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>gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, complete sequence
          Length = 235239

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    ttttaccaacaaagaaatta 381
              ||||||||||||||||||||
Sbjct: 138947 ttttaccaacaaagaaatta 138928
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>gb|AC172110.2| Rhesus Macaque CHR7 BAC CH250-119L7 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 219949

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    aatttccaagtatttctatt 346
              ||||||||||||||||||||
Sbjct: 219130 aatttccaagtatttctatt 219111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,847,388
Number of Sequences: 3902068
Number of extensions: 5847388
Number of successful extensions: 109881
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109762
Number of HSP's gapped (non-prelim): 119
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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