ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baald13 |
|---|---|
| Clone Library Name | barley_pub |
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 87 EHRVPGQRQGEAPGDERGVRVHRGEEAEHGQVLPGR 194 +HR PG ++ + PG G R HR H PGR Sbjct: 56 QHRHPGPQRADHPGSPVGGRRHRRRNLAHPGADPGR 91
>YCF68_SACOF (Q6ENQ5) Hypothetical 14 kDa protein ycf68 (ORF 134)| Length = 134 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -2 Query: 258 PRPLLRRRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAHDALEH 79 P LL RR+ A+Q HV R ++G R G L+ R +HP +LEH Sbjct: 13 PNKLLLRRIDGAIQVRSHVDRTFYSLVGSGR-SGGGPPRLLSSRESIHPLSVYGELSLEH 71
>YCF68_SACHY (Q6L3C9) Hypothetical 14 kDa protein ycf68 (ORF 134)| Length = 134 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -2 Query: 258 PRPLLRRRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAHDALEH 79 P LL RR+ A+Q HV R ++G R G L+ R +HP +LEH Sbjct: 13 PNKLLLRRIDGAIQVRSHVDRTFYSLVGSGR-SGGGPPRLLSSRESIHPLSVYGELSLEH 71
>GLNE_STRAW (Q81ZW1) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 1000 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -2 Query: 240 RRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAH 94 RR+ E L + + V Q+ G ARL P+ ARE L PA H Sbjct: 470 RRLHEKLFYRPLLDAVAQLAPGEARLSPNAARERLVALGYADPAAALRH 518
>PCCB_BACSU (P54541) Putative propionyl-CoA carboxylase beta chain (EC 6.4.1.3)| (PCCase) (Propanoyl-CoA:carbon dioxide ligase) Length = 506 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 342 DIISSVLFMLHFLPSSERALEGDPELHGPRPLLRRRV 232 ++++ V +L +LP + R E PE RPLL R V Sbjct: 229 EVLTGVRKLLSYLPLNGRTTEPKPEKEASRPLLNRLV 265
>GLNE_STRCO (Q8CK02) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 999 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = -2 Query: 240 RRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAH 94 RR+ E L + + V Q+ G ARL P ARE L PA H Sbjct: 472 RRLHEKLFYRPLLDAVAQLAPGEARLSPEAARERLVALGYADPAAALRH 520
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 29.3 bits (64), Expect = 8.6 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 123 PGDERGVRVHRGEEAEHGQVLPGRHGGRDQ 212 P E+G R + G + + G + PGRHG DQ Sbjct: 1059 PPGEKGERGYPGPKGDPGPMGPGRHGRGDQ 1088
>PURL_CORGL (Q8NMI5) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 762 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 551 YNVTGSNLFSHSMVMGRAYVYACVRDEVGNVNPKEERNLFIL 426 YN TG + V+G V V +GNV P E+ +L++L Sbjct: 555 YNQTGDEPILPTPVVGVLGVLDNVEQSIGNVLPSEDNDLYLL 596
>NPD_VIBPA (Q87PH8) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein| SIR2 homolog) Length = 241 Score = 29.3 bits (64), Expect = 8.6 Identities = 22/88 (25%), Positives = 39/88 (44%) Frame = -2 Query: 345 IDIISSVLFMLHFLPSSERALEGDPELHGPRPLLRRRVGEALQHLDHVHRVVQVVLGHAR 166 + +I+ + LH S+ + +HG LL+ R E+ Q ++H + L H Sbjct: 89 VTVITQNIDNLHERGGSQNVIH----MHGE--LLKARCSESNQVIEHTEDIKTGELCHCC 142 Query: 165 LLPHGAREHLARRRELHPAVGRAHDALE 82 +P R H+ E+ +G + ALE Sbjct: 143 QIPSQMRPHIVWFGEMRLRMGEIYAALE 170
>YCF68_MAIZE (P03938) Hypothetical 14 kDa protein ycf68 (ORF 134)| Length = 134 Score = 29.3 bits (64), Expect = 8.6 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -2 Query: 258 PRPLLRRRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAHDALEH 79 P LL RR+ A+Q HV R ++G R G L+ R +HP +LEH Sbjct: 13 PNKLLLRRIDGAIQVRSHVDRTFYSLVGSGR-SGGGPPGLLSSRESIHPLSVYGELSLEH 71
>DIP2A_HUMAN (Q14689) Disco-interacting protein 2 homolog A| Length = 1571 Score = 29.3 bits (64), Expect = 8.6 Identities = 16/76 (21%), Positives = 36/76 (47%) Frame = +1 Query: 22 PXMPXLRALHRGTTGPTRXMFESIVCPANGRVKLPATSEVFACTVGKKPSMAKYYLDDTV 201 P + +R++ RG +G + + P N RV + K+P + ++++DD Sbjct: 240 PQVASVRSVPRGCSGSMLETADGV--PVNSRVSSKIQQLLNTLKRPKRPPLKEFFVDDFE 297 Query: 202 DVIKMLQGLANAPSQQ 249 +++++ Q N P + Sbjct: 298 ELLEVQQPDPNQPKPE 313
>TIG_NOCFA (Q5Z064) Trigger factor (TF)| Length = 465 Score = 29.3 bits (64), Expect = 8.6 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +3 Query: 60 DRSDEXHVREHRVPGQRQGEAPGDERGVRVHRGEEAEH--GQVLPGRH 197 DR+ + ++ R+PG R G+AP R+ RG E VLP R+ Sbjct: 31 DRAYKALAKQVRIPGFRPGKAPAKLLEARLGRGAILEQVVNDVLPARY 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,903,851 Number of Sequences: 219361 Number of extensions: 1230887 Number of successful extensions: 4109 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4106 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
