>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  328 bits (840), Expect(2) = 4e-97
 Identities = 161/161 (100%), Positives = 161/161 (100%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT
Sbjct: 267 RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 326

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY
Sbjct: 327 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 386

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG
Sbjct: 387 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427



 Score = 47.0 bits (110), Expect(2) = 4e-97
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 531 GKGAQQGTLPVPEGCTDQNA 590
           GKGAQQGTLPVPEGCTDQNA
Sbjct: 427 GKGAQQGTLPVPEGCTDQNA 446

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  295 bits (755), Expect = 7e-80
 Identities = 138/161 (85%), Positives = 153/161 (95%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TDNV DE +VKIVD+
Sbjct: 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDS 326

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EKL+EY
Sbjct: 327 FPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEY 386

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           G+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG
Sbjct: 387 GYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  295 bits (755), Expect = 7e-80
 Identities = 138/161 (85%), Positives = 153/161 (95%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV DE+VV++VDT
Sbjct: 264 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDT 323

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EY
Sbjct: 324 FPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 383

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           GHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG
Sbjct: 384 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  279 bits (714), Expect(2) = 2e-78
 Identities = 130/161 (80%), Positives = 149/161 (92%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV+D+ +VK+VDT
Sbjct: 277 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDT 336

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVY DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++KLL Y
Sbjct: 337 FPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGY 396

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           G MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG
Sbjct: 397 GGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437



 Score = 33.1 bits (74), Expect(2) = 2e-78
 Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 528 GGKGAQQ-GTLPVPEGCTDQNA 590
           GG+ AQQ G +PVPEGCTD  A
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQA 458

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  270 bits (690), Expect(2) = 2e-76
 Identities = 128/161 (79%), Positives = 145/161 (90%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+ TGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD + DE +V +VD 
Sbjct: 277 RVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQ 336

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EKL+EY
Sbjct: 337 FPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEY 396

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           G+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+  G+FYG
Sbjct: 397 GNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437



 Score = 35.8 bits (81), Expect(2) = 2e-76
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 531 GKGAQQGTLPVPEGCTD 581
           GKGAQQ  LPVPEGCTD
Sbjct: 437 GKGAQQVNLPVPEGCTD 453

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  282 bits (722), Expect = 4e-76
 Identities = 131/161 (81%), Positives = 151/161 (93%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++DNV+ E +VK+VDT
Sbjct: 277 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDT 336

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EKLLEY
Sbjct: 337 FPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEY 396

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           G+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG
Sbjct: 397 GNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  281 bits (720), Expect = 8e-76
 Identities = 130/160 (81%), Positives = 151/160 (94%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V +E VV++VDT
Sbjct: 273 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDT 332

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EKLLEY
Sbjct: 333 FPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEY 392

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 480
           GHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+
Sbjct: 393 GHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  281 bits (718), Expect = 1e-75
 Identities = 134/159 (84%), Positives = 149/159 (93%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+V+KIVDT
Sbjct: 281 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDT 340

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEKLLEY
Sbjct: 341 FPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEY 400

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 477
           G+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F
Sbjct: 401 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  271 bits (693), Expect(2) = 3e-75
 Identities = 127/161 (78%), Positives = 146/161 (90%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TD V  E VVK+VD 
Sbjct: 275 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDA 334

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++KL+EY
Sbjct: 335 FPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEY 394

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 483
           G+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+  G+F+G
Sbjct: 395 GNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435



 Score = 30.8 bits (68), Expect(2) = 3e-75
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 531 GKGAQQGTLPVPEGCTDQNA 590
           GK AQQ +LPV +GCTD  A
Sbjct: 435 GKAAQQVSLPVAQGCTDPEA 454

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  279 bits (714), Expect = 4e-75
 Identities = 133/157 (84%), Positives = 149/157 (94%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+VVKIVD+
Sbjct: 276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDS 335

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EKLLEY
Sbjct: 336 FPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEY 395

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 471
           G+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG
Sbjct: 396 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  279 bits (713), Expect = 5e-75
 Identities = 129/159 (81%), Positives = 149/159 (93%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E +VK+VD 
Sbjct: 277 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQ 336

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++KLL+Y
Sbjct: 337 FPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQY 396

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 477
           G+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F
Sbjct: 397 GNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  275 bits (703), Expect = 7e-74
 Identities = 132/160 (82%), Positives = 144/160 (90%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV  E VVKIVD 
Sbjct: 281 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDN 340

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EKLLEY
Sbjct: 341 FPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEY 400

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 480
           G+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+  GSF+
Sbjct: 401 GNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  270 bits (691), Expect = 2e-72
 Identities = 122/160 (76%), Positives = 149/160 (93%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TD V +E + K+VDT
Sbjct: 279 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDT 338

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++KLL+Y
Sbjct: 339 FPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQY 398

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 480
           G+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 399 GNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  262 bits (669), Expect = 6e-70
 Identities = 119/160 (74%), Positives = 147/160 (91%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V ++ +V++VD 
Sbjct: 281 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDK 340

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
            PGQSIDFFGALRARVYDDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++KLL Y
Sbjct: 341 HPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLY 400

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 480
             MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 401 ASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  229 bits (585), Expect = 3e-60
 Identities = 106/136 (77%), Positives = 122/136 (89%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTR+DRIG+C GIF+TD V  E +VK+VDT
Sbjct: 274 RVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDT 333

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EKLLEY
Sbjct: 334 FPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEY 393

Query: 361 GHMLVQEQDNVKRVQL 408
           G+MLV EQ+NVKRV+L
Sbjct: 394 GNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  201 bits (512), Expect = 1e-51
 Identities = 99/146 (67%), Positives = 115/146 (78%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPIV TGNDFSTLYAPLIRDGRMEK+YW PTR+DRIGVC GIFQ DNV    V  +VDT
Sbjct: 250 RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDT 309

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FPGQSIDFFGALRARVYDD VR+W+  TG++ IG++LVN+R   V   +  M +  L++Y
Sbjct: 310 FPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKY 368

Query: 361 GHMLVQEQDNVKRVQLADTYMSQAAL 438
           G  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 369 GKSLVDEQENVKRVQLADAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  171 bits (434), Expect = 1e-42
 Identities = 77/140 (55%), Positives = 103/140 (73%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RD+++G+  GIF  D +S   V K+VD+
Sbjct: 150 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDS 209

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FP QSIDFF ALR+R+YD+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E 
Sbjct: 210 FPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIES 269

Query: 361 GHMLVQEQDNVKRVQLADTY 420
            + +V EQ  ++  QL D Y
Sbjct: 270 ANFMVAEQKRIETSQLVDEY 289

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  166 bits (420), Expect = 5e-41
 Identities = 76/140 (54%), Positives = 101/140 (72%)
 Frame = +1

Query: 1   RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 180
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RDD++G+  GIF  D +S   + ++VDT
Sbjct: 150 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDT 209

Query: 181 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 360
           FP QSIDFF ALR+R+YD ++R ++   G E I  R+VNS + P  F++P  ++  L+E 
Sbjct: 210 FPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIES 269

Query: 361 GHMLVQEQDNVKRVQLADTY 420
           G++++ EQ  V   QL D Y
Sbjct: 270 GNLVLGEQQRVDNSQLVDEY 289

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 27/60 (45%), Positives = 30/60 (50%)
 Frame = +1

Query: 169 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 348
           +VDTFPGQSIDFFGAL                            R+GP TFEQP MT+EK
Sbjct: 1   LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32

>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 868

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
 Frame = -1

Query: 480  VEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVXXXXXXXXXXXLEGHGPVP 301
            VEG+  HR L  + +   AHVG     +LDI  L DE   V            +  G   
Sbjct: 671  VEGS--HRFLRRVWRLAQAHVGQGASGSLDIAALTDEQKAVRRSIHQAIKQASQDIGQNQ 728

Query: 300  RVHQPLANVLDSGRADPLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRL--VTDIVGLE- 130
            + +  +A V        +  + V+  + Q+T +   L  EG++ +   L  +T  +  E 
Sbjct: 729  KFNTAVAQV--------MTLMNVLEKAPQATPQDRALLQEGLETVTLLLAPITPHISHEL 780

Query: 129  -DTLADTDTVVTGGSPVELLHTTITD 55
               L   + V+  G PV   H  + D
Sbjct: 781  WTQLGHNEPVIDAGWPVFDAHALVQD 806

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = +1

Query: 313 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 468
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 469 GSFYG*KILHTHPPSLAA 522
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>LEPA_HELPY (O25122) GTP-binding protein lepA|
          Length = 602

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +1

Query: 166 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 345
           KI+ T P  S DF   L+A +YD     ++G+         LV   DG +  EQ  + + 
Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232

Query: 346 KLLEYGHMLVQEQDNVKRV 402
              ++G + +   + +K++
Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251

>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 252 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 127
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +1

Query: 313 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 468
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 469 GSFYG*KILHTHPPSLAA 522
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 416 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 312
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -1

Query: 165 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 31
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 30  IV 25
           I+
Sbjct: 585 IL 586

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 250 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 357
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -1

Query: 165 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 31
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 30  IV 25
           I+
Sbjct: 585 IL 586

>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -1

Query: 165 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 31
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 30  IV 25
           I+
Sbjct: 585 IL 586

>LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA|
          Length = 616

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
 Frame = -1

Query: 288 PLANVLDSGRADP------LAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDI---VG 136
           P+ N +D   ADP      LA LI   P      +V+G +  GVDDL DR+V +I   VG
Sbjct: 142 PVLNKIDLPAADPDKYAAELAGLIGGKPG--DVLRVSGKTGVGVDDLLDRVVQEIPAPVG 199

Query: 135 LEDTLA 118
             D  A
Sbjct: 200 AADAPA 205

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = +1

Query: 313 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 468
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 469 GSFYG*KILHTHPPSLAA 522
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

>RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3|
          Length = 209

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 142 NVSDESVVKIVDTFP-GQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 318
           NV DE  +K VDTF  G  +D  G  + + +   +++W  S G  + G +   +      
Sbjct: 92  NVGDE--IK-VDTFEIGDKVDVSGVSKGKGFQGTIKRWNASRGPMSHGSKFHRAPGSMGA 148

Query: 319 FEQPKMTVEKLLEYGHM 369
              P  T +     GHM
Sbjct: 149 ASDPSRTFKNKRMPGHM 165

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 154 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFE 324
           + +V  V+T    S D   A+ ARV  D+++ ++GS  +E   ++ V+  +G + ++
Sbjct: 224 DRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYD 280

>PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 135 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 25
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369

>PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 135 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 25
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,954,097
Number of Sequences: 219361
Number of extensions: 1673930
Number of successful extensions: 5518
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 5305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5515
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)