Clone Name	baald10
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr...	283	3e-73
2	gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c...	256	8e-65
3	emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur...	204	3e-49
4	emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp...	200	4e-48
5	dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bis...	165	2e-37
6	dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bis...	141	3e-30
7	emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur...	94	7e-16
8	dbj|AK099574.1| Oryza sativa (japonica cultivar-group) cDNA clon...	88	4e-14
9	gb|AF192780.1|AF192780 Avena maroccana clone Ma7 ribulose-1,5-bi...	80	1e-11
10	gb|AF192775.1|AF192775 Avena strigosa clone Str5 ribulose-1,5-bi...	80	1e-11
11	gb|AF192774.1|AF192774 Avena strigosa clone Str3 ribulose-1,5-bi...	80	1e-11
12	gb|AF097360.1|AF097360 Avena strigosa ribulose-1,5-bisphosphate ...	80	1e-11
13	gb|AF104250.1|AF104250 Avena maroccana ribulose-1,5-bisphosphate...	80	1e-11
14	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
15	gb|AF097361.1|AF097361 Avena clauda ribulose-1,5-bisphosphate ca...	78	4e-11
16	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	78	4e-11
17	emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523...	78	4e-11
18	emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical pr...	76	2e-10
19	gb|AF192779.1|AF192779 Avena maroccana clone Ma4 ribulose-1,5-bi...	76	2e-10
20	gb|AF192777.1|AF192777 Avena clauda clone Cl9 ribulose-1,5-bisph...	76	2e-10
21	gb|AF192776.1|AF192776 Avena clauda clone Cl5 ribulose-1,5-bisph...	76	2e-10
22	dbj|AB020952.1| Aegilops searsii DNA for ribulose-1,5-bisphospha...	76	2e-10
23	gb|AF096617.1|AF096617 Avena sterilis subsp. ludoviciana ribulos...	74	6e-10
24	dbj|AB020945.1| Avena sativa DNA for ribulose-1,5-bisphosphate c...	74	6e-10
25	emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putat...	72	2e-09
26	gb|AF202646.1|AF202646 Avena clauda clone ClG4 ribulose-1,5-bisp...	68	4e-08
27	gb|AF192773.1|AF192773 Avena agadiriana ribulose-1,5-bisphosphat...	68	4e-08
28	gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carbo...	68	4e-08
29	dbj|AB020955.1| Triticum timopheevii subsp. armeniacum DNA for r...	68	4e-08
30	dbj|AB020954.1| Triticum urartu DNA for ribulose-1,5-bisphosphat...	68	4e-08
31	dbj|AB020953.1| Aegilops squarrosa DNA for ribulose-1,5-bisphosp...	68	4e-08
32	dbj|AB020935.1| Aegilops sharonensis DNA for ribulose-1,5-bispho...	68	4e-08
33	gb|AF202645.1|AF202645 Avena clauda clone ClG2 ribulose-1,5-bisp...	66	2e-07
34	gb|AF200303.1|AF200303 Avena clauda ribulose-1,5-bisphosphate ca...	66	2e-07
35	gb|AF097359.1|AF097359 Avena agadiriana ribulose-1,5-bisphosphat...	66	2e-07
36	dbj|AB020958.1| Triticum aestivum DNA for ribulose-1,5-bisphosph...	66	2e-07
37	dbj|AB020960.1| Bromus catharticus DNA for ribulose-1,5-bisphosp...	66	2e-07
38	gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carbo...	64	6e-07
39	dbj|AB020946.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	64	6e-07
40	dbj|AB020944.1| Agropyron intermedium DNA for ribulose-1,5-bisph...	64	6e-07
41	dbj|AB020943.1| Hordeum vulgare DNA for ribulose-1,5-bisphosphat...	64	6e-07
42	gb|AF202648.1|AF202648 Avena maroccana ribulose-1,5-bisphosphate...	62	2e-06
43	dbj|AB020938.1| Aegilops squarrosa DNA for ribulose-1,5-bisphosp...	62	2e-06
44	dbj|AB020937.1| Aegilops searsii DNA for ribulose-1,5-bisphospha...	62	2e-06
45	dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bis...	62	2e-06
46	dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bis...	62	2e-06
47	gb|AF192778.1|AF192778 Avena sterilis subsp. ludoviciana ribulos...	60	9e-06
48	dbj|AB020950.1| Aegilops sharonensis DNA for ribulose-1,5-bispho...	60	9e-06
49	dbj|AB020949.1| Aegilops longissima DNA for ribulose-1,5-bisphos...	60	9e-06
50	dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bis...	60	9e-06
51	gb|AF104249.1|AF104249 Avena vaviloviana ribulose-1,5-bisphospha...	58	4e-05
52	gb|AF039015.1|AF039015 Fritillaria agrestis clone TA1 ribulose 1...	58	4e-05
53	gb|AF039013.1|AF039013 Fritillaria agrestis clone TA26 ribulose ...	58	4e-05
54	gb|AF024574.1|AF024574 Fritillaria agrestis ribulose 1,5 bisphos...	58	4e-05
55	dbj|AB020934.1| Aegilops longissima DNA for ribulose-1,5-bisphos...	58	4e-05
56	dbj|AB020959.1| Secale cereale DNA for ribulose-1,5-bisphosphate...	56	1e-04
57	dbj|AB020936.1| Aegilops bicornis DNA for ribulose-1,5-bisphosph...	56	1e-04
58	dbj|AB020933.1| Aegilops longissima DNA for ribulose-1,5-bisphos...	56	1e-04
59	dbj|AB020932.1| Aegilops longissima DNA for ribulose-1,5-bisphos...	56	1e-04
60	gb|AY445627.1| Oryza sativa (japonica cultivar-group) ribulose-1...	54	6e-04
61	emb|X06535.1|ZMRUBSSU Maize mRNA for ribulose-1,5-bisphosphate c...	54	6e-04
62	dbj|AK068555.1| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
63	gb|AY103730.1| Zea mays PCO095823 mRNA sequence	54	6e-04
64	gb|AF017363.1|AF017363 Oryza sativa ribulose 1,5-bisphosphate ca...	54	6e-04
65	dbj|D00170.1|MZEPCSSU Zea mays mRNA for ribulose 1,5-bisphosphat...	54	6e-04
66	dbj|AB020942.1| Secale cereale DNA for ribulose-1,5-bisphosphate...	54	6e-04
67	dbj|D00644.1|RICRUBPC2 Oryza sativa (japonica cultivar-group) mR...	54	6e-04
68	dbj|AK121444.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
69	dbj|AK119219.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
70	gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp...	52	0.002
71	dbj|AK070556.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
72	dbj|AK061611.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
73	gb|AF052305.1|AF052305 Oryza sativa ribulose 1,5-bisphosphate ca...	52	0.002
74	gb|AF039004.1|AF039004 Fritillaria agrestis clone TA9 rbcS pseud...	52	0.002
75	gb|AF017364.1|AF017364 Oryza sativa ribulose 1,5-bisphosphate ca...	52	0.002
76	gb|L22155.1|RICCPRBCLA Oryza sativum mitochondrial ribulose bisp...	52	0.002
77	dbj|AB020951.1| Aegilops bicornis DNA for ribulose-1,5-bisphosph...	52	0.002
78	dbj|D00643.1|RICRUBPC1 Oryza sativa (japonica cultivar-group) mR...	52	0.002
79	gb|DQ418485.1| Zingiber officinale ribulose-1,5-bisphosphate car...	50	0.009
80	gb|AF039012.1|AF039012 Fritillaria agrestis clone TA27 ribulose ...	50	0.009
81	gb|AF039010.1|AF039010 Fritillaria agrestis clone TA24 ribulose ...	50	0.009
82	gb|AF039009.1|AF039009 Fritillaria agrestis clone TA23 ribulose ...	50	0.009
83	gb|AF039007.1|AF039007 Fritillaria agrestis clone TA10 rbcS pseu...	50	0.009
84	gb|AF039006.1|AF039006 Fritillaria agrestis clone TA17 rbcS pseu...	50	0.009
85	gb|AF039005.1|AF039005 Fritillaria agrestis clone TA13 rbcS pseu...	50	0.009
86	dbj|AB020956.1| Triticum turgidum subsp. dicoccoides DNA for rib...	50	0.009
87	dbj|AB020948.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	50	0.009
88	dbj|AB020947.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	50	0.009
89	dbj|AB020939.1| Triticum timopheevii subsp. armeniacum DNA for r...	50	0.009
90	emb|Y00322.1|ZMRBCS Maize rbcS gene for ribulose-1,5-bisphosphat...	48	0.036
91	gb|AF031543.1|AF031543 Fritillaria agrestis ribulose 1,5 bisphos...	48	0.036
92	gb|AF024572.1|AF024572 Fritillaria agrestis ribulose 1,5 bisphos...	48	0.036
93	dbj|AB020931.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	48	0.036
94	dbj|AB020930.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	48	0.036
95	dbj|AB020928.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	48	0.036
96	gb|AF202647.1|AF202647 Avena agadiriana ribulose-1,5-bisphosphat...	46	0.14
97	dbj|AB020929.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	46	0.14
98	dbj|AB020927.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	46	0.14
99	dbj|AB020926.1| Aegilops speltoides DNA for ribulose-1,5-bisphos...	46	0.14
100	dbj|AB020941.1| Triticum aestivum DNA for ribulose-1,5-bisphosph...	44	0.56
101	dbj|AB020940.1| Triticum turgidum subsp. dicoccoides DNA for rib...	44	0.56
102	dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bis...	44	0.56
103	emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 ...	42	2.2
104	gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome	42	2.2
105	emb|Y09214.1|ZMRUBSMSU Z.mays rubisco small subunit gene	42	2.2
106	emb|AJ428877.1|ROB428877 Rumex obtusifolius mRNA for putative ri...	42	2.2
107	gb|AF039014.1|AF039014 Fritillaria agrestis clone TA8 ribulose 1...	42	2.2
108	gb|AF039011.1|AF039011 Fritillaria agrestis clone TA22 ribulose ...	42	2.2
109	gb|AF039008.1|AF039008 Fritillaria agrestis clone TA15 ribulose ...	42	2.2
110	gb|AF031544.1|AF031544 Fritillaria agrestis ribulose 1,5 bisphos...	42	2.2
111	gb|AF024573.1|AF024573 Fritillaria agrestis ribulose 1,5 bisphos...	42	2.2
112	dbj|AB020957.1| Triticum aestivum DNA for ribulose-1,5-bisphosph...	42	2.2
113	gb|BC036690.1| Homo sapiens lemur tyrosine kinase 3, mRNA (cDNA ...	40	8.7
114	gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, com...	40	8.7
115	gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, c...	40	8.7
116	gb|AC009219.7| Drosophila melanogaster clone BACR32N16, complete...	40	8.7
117	gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, com...	40	8.7
118	gb|AC125097.3| Mus musculus BAC clone RP24-188J11 from chromosom...	40	8.7
119	dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ...	40	8.7
120	ref|XM_936372.1| PREDICTED: Homo sapiens lemur tyrosine kinase 3...	40	8.7
121	ref|XM_055866.7| PREDICTED: Homo sapiens lemur tyrosine kinase 3...	40	8.7
122	gb|AC016157.2|AC016157 Drosophila melanogaster, chromosome 3R, r...	40	8.7
123	gb|AC008403.8| Homo sapiens chromosome 19 clone CTC-273B12, comp...	40	8.7
124	dbj|AK070257.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.7
125	dbj|AK068266.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.7
126	gb|M86717.1|SCFBCS1A Saccharum hybrid cultivar H32-8560 ribulose...	40	8.7
127	gb|AE003689.2| Drosophila melanogaster chromosome 3R, section 27...	40	8.7
128	emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...	40	8.7
129	gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Can...	40	8.7
130	dbj|AB067470.1| Homo sapiens mRNA for KIAA1883 protein, partial cds	40	8.7
131	dbj|AB067656.1| Oryza sativa (japonica cultivar-group) OsrbcS ge...	40	8.7

---

>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  283 bits (143), Expect = 3e-73
 Identities = 467/528 (88%), Gaps = 46/528 (8%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagtnccaccgccg 79
           |||||||||| ||||||||| |||| |||||||||||||||| ||||||| |||||||||
Sbjct: 102 atggcctcgt-cggccacct-ccgt-cgctcctttccagggg-ctcaagt-ccaccgccg 156

                                                                       
Query: 80  gcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaacggtggn 139
           ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| 
Sbjct: 157 gcctccccgtcagccgccgctc-caacggcgctagcctcggcagcgtcagcaacggtgg- 214

                                                                       
Query: 140 aaggnatcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgagnaccc 199
           |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||   ||
Sbjct: 215 aagg-atcaggtgcatgcaggtgtggcccatcga-gggcatcaag-aagttcgaga--cc 269

                                                                       
Query: 200 ctgtctttacttgccaccacttcagcacgggaggccctcctttaagcagggtcgactacc 259
           ||||| |||||||||||| | ||| ||| ||||||||||| | ||||| |||||||||||
Sbjct: 270 ctgtc-ttacttgccaccgc-tcaccac-ggaggccctcc-tcaagca-ggtcgactacc 324

                                                                       
Query: 260 ttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtttgggtttcattc 319
            |||||||| |||||||||||||| ||||| |||||||||||||||||  || |||||  
Sbjct: 325 -tgatccgc-tccaagtgggtgcc-ttgcc-tcgagttcagcaaggtt--gggttcat-- 376

                                                                       
Query: 320 tttccgtgagcacaacgcattctccctgggtactacgatgggcccggtactggacaatgt 379
            |||||||||||||||||  |||||| ||||||||||||||  |||||||||||||||||
Sbjct: 377 cttccgtgagcacaacgc-gtctccc-gggtactacgatgg--ccggtactggacaatgt 432

                                                                       
Query: 380 gggaagctgcccttatgtttcgggatgcacccgacgcccaccacaggtgctcaacgaggt 439
            ||||||||||  |||| |||||| |||| ||||||||   |||||||| ||||||||||
Sbjct: 433 -ggaagctgcc--tatg-ttcggg-tgca-ccgacgcc--acacaggtgatcaacgaggt 484

                                                                       
Query: 440 ggagggagggtcaagnaagggagtaccctggacgcgtatgtccgcatcattcggattcga 499
           |||||   ||||||| |  |||||||||| |||||||| |||||||||| ||||||||||
Sbjct: 485 ggagg--aggtcaagaa--ggagtaccct-gacgcgtacgtccgcatca-tcggattcga 538

                                                           
Query: 500 caacatggcgtcagggtgcagtgcgtcagcttcattcgccttcaagcc 547
           |||||| ||| || |||||||||||||||||||| |||||||||||||
Sbjct: 539 caacat-gcgcca-ggtgcagtgcgtcagcttca-tcgccttcaagcc 583

---

>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  256 bits (129), Expect = 8e-65
 Identities = 443/503 (88%), Gaps = 48/503 (9%)
 Strand = Plus / Plus

                                                                       
Query: 46  cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaa 105
           |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||  ||
Sbjct: 62  cgctcctttccagggg-ctcaagt-ccaccgccggccttcccgtcagccgccgctc-caa 118

                                                                       
Query: 106 cggtgctagcctcggc-agcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtg 164
           ||   ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 119 cg---ctagc-tcggccagcgtcagcaacggtgg-aagg-atcaggtgcatgcaggtgtg 172

                                                                       
Query: 165 gcccatcgaggggcatcaagnaagttcgagnacccctgtctttacttgccaccacttcag 224
           ||||||||| |||||||||| |||||||||   ||||||| |||| | ||||||| ||||
Sbjct: 173 gcccatcga-gggcatcaag-aagttcgaga--ccctgtc-ttaccttccaccac-tcag 226

                                                                       
Query: 225 cacgggaggccctcctttaagcagggtcgactaccttgatccgcttccaagtgggtgcct 284
           ||| ||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||| 
Sbjct: 227 cac-ggaggccctcc-ttaagca-ggtcgactacc-tgatccgc-tccaagtgggtgcc- 280

                                                                       
Query: 285 ttgccttcgagttcagcaaggtttgggtttcattctttccgtgagcacaacgcattctcc 344
           ||||| |||||||||||||||||  || |||||   |||||||||||||||||| ||| |
Sbjct: 281 ttgcc-tcgagttcagcaaggtt--gggttcat--cttccgtgagcacaacgca-tct-c 333

                                                                       
Query: 345 ctgggtactacgatgggcccggtactggacaatgtgggaagctgcccttatgtttcggga 404
           ||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||   |||
Sbjct: 334 ctgggtactacgatgg--ccggtactggacaatgt-ggaagctgcc--tatgtt--cgga 386

                                                                       
Query: 405 tgcacccgacgcccaccacaggtgctcaacgaggtggagggagggtcaagnaagggagta 464
           |||| ||||||||   ||||||||||||||||||||||||   ||||||| |  ||||||
Sbjct: 387 tgca-ccgacgcc--acacaggtgctcaacgaggtggagg--aggtcaagaa--ggagta 439

                                                                       
Query: 465 ccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgcagtgcg 524
           |||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct: 440 ccct-gacgcgtatgtccgcatca-tcggattcgacaacat-gcgtca-ggtgcagtgcg 495

                                  
Query: 525 tcagcttcattcgccttcaagcc 547
           ||||||||| |||| ||||||||
Sbjct: 496 tcagcttca-tcgctttcaagcc 517

---

>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  204 bits (103), Expect = 3e-49
 Identities = 264/294 (89%), Gaps = 22/294 (7%)
 Strand = Plus / Plus

                                                                       
Query: 46  cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaa 105
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||  ||
Sbjct: 4   cgctcctttccagggg-ctcaagt-ccaccgccggcctccccgtcagccgccgctc-caa 60

                                                                       
Query: 106 cggtgctagcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtgg 165
           ||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 61  cggcgctagcctcggcagcgtcagcaacggtgg-aagg-atcaggtgcatgcaggtgtgg 118

                                                                       
Query: 166 cccatcgaggggcatcaagnaagttcgagnacccctgtctttacttgccaccacttcagc 225
           |||||||| |||||||||| |||||||||   ||||||| |||| ||||||| | |||||
Sbjct: 119 cccatcga-gggcatcaag-aagttcgaga--ccctgtc-ttacctgccaccgc-tcagc 172

                                                                       
Query: 226 acgggaggccctcctttaagcagggtcgactaccttgatccgcttccaagtgggtgcctt 285
           || ||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 173 ac-ggaggccctcc-tcaagca-ggtcgactacc-tgatccgc-tccaagtgggtgcc-t 226

                                                                 
Query: 286 tgccttcgagttcagcaaggtttgggtttcattctttccgtgagcacaacgcat 339
           |||| |||||||||||||||||  || |||||   |||||||||||||||||||
Sbjct: 227 tgcc-tcgagttcagcaaggtt--gggttcat--cttccgtgagcacaacgcat 275



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 84/89 (94%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||
Sbjct: 379 ggagtaccctg-acgcgtatgtccgcatcat-cggattcgacaacatg-cgtcagg-tgc 434

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 435 agtgcgtcagcttca-tcgccttcaagcc 462

---

>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  200 bits (101), Expect = 4e-48
 Identities = 329/374 (87%), Gaps = 30/374 (8%)
 Strand = Plus / Plus

                                                                       
Query: 8   cccccaccgtgnatggcctcgtncggccacctnccgtncgctcctttccaggggnctcaa 67
           ||||||||||| |||||||||| ||||||||| |||| |||||||||||||||| |||||
Sbjct: 51  cccccaccgtg-atggcctcgt-cggccacct-ccgt-cgctcctttccagggg-ctcaa 105

                                                                       
Query: 68  gtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtc 127
           || |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||
Sbjct: 106 gt-ccaccgccggcctccccgtcagccgccgctc-caacggcgctagcctcggcagcgtc 163

                                                                       
Query: 128 agcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaa 187
           ||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct: 164 agcaacggtgg-aagg-atcaggtgcatgcaggtgtggcccatcga-gggtatcaag-aa 219

                                                                       
Query: 188 gttcgagnacccctgtctttacttgccaccacttcagcacgggaggccctcctttaagca 247
           |||||||   |||||||  ||||||||||| | ||||||| ||||| ||||| |||||||
Sbjct: 220 gttcgaga--ccctgtc-ctacttgccaccgc-tcagcac-ggagggcctcc-ttaagca 273

                                                                       
Query: 248 gggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
            ||||||||||| |||||||| ||||||||||||||  |||| ||||||| || ||||||
Sbjct: 274 -ggtcgactacc-tgatccgc-tccaagtgggtgcc-ctgcc-tcgagtttagaaaggtt 328

                                                                       
Query: 308 tgggtttcattctttccgtgagcacaacgcattctccctgggtactacgatgggcccggt 367
             || |||||   |||||||| ||||||| ||   ||||||||||||||||||  |||||
Sbjct: 329 --gggttcat--cttccgtgaacacaacgtat--cccctgggtactacgatgg--ccggt 380

                         
Query: 368 actggacaatgtgg 381
           ||||||||||||||
Sbjct: 381 actggacaatgtgg 394



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 61/67 (91%), Gaps = 4/67 (5%)
 Strand = Plus / Plus

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| |||||||||||||||| ||||||| |||||| ||||||||||| ||||||
Sbjct: 481 ccgcatcat-cggattcgacaacatg-cgtcagg-tgcagtccgtcagcttca-tcgcct 536

                  
Query: 541 tcaagcc 547
            ||||||
Sbjct: 537 ccaagcc 543

---

>dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p9-1
          Length = 739

 Score =  165 bits (83), Expect = 2e-37
 Identities = 343/393 (87%), Gaps = 38/393 (9%)
 Strand = Plus / Plus

                                                                       
Query: 155 tgcaggtgtggcccatcgaggggcatcaagnaagttcgagnacccctgtctttacttgcc 214
           |||||||||||||||||||||| ||||||| |||||||||   ||||||||| || ||||
Sbjct: 354 tgcaggtgtggcccatcgaggg-catcaag-aagttcgaga--ccctgtctt-acctgcc 408

                                                                       
Query: 215 accacttcagcacgggaggccctcctttaagcagggtcgactaccttgatccgcttccaa 274
           ||| || |||||||| ||||||||||  ||||||| |||||||||| |||||||| ||||
Sbjct: 409 accgct-cagcacgg-aggccctcctc-aagcagg-tcgactacct-gatccgct-ccaa 462

                                                                       
Query: 275 gtgggtgcctttgccttcgagttcagcaaggtttgggtttcattctttccgtgagcacaa 334
           ||||||||||| |||| |||||||||||||||| ||  |||||   ||||||||||||||
Sbjct: 463 gtgggtgcctt-gcct-cgagttcagcaaggttggg--ttcatc--ttccgtgagcacaa 516

                                                                       
Query: 335 cgcattctccctgggtactacgatgggcccggtactggacaatgtgggaagctgccctta 394
           ||||| |||| |||||||||||||||  |||||| |||||||||||| ||||||||  ||
Sbjct: 517 cgcat-ctcc-tgggtactacgatgg--ccggtattggacaatgtgg-aagctgcc--ta 569

                                                                       
Query: 395 tgtttcgggatgcacccgacgcccaccacaggtgctcaacgaggtggagggagggtcaag 454
           |||| |||| |||||  ||||||   |||||||| |||||||||||||||   |||||||
Sbjct: 570 tgtt-cggg-tgcact-gacgcca--cacaggtgatcaacgaggtggagga--ggtcaag 622

                                                                       
Query: 455 naagggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagg 514
            |  ||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 623 aa--ggagtaccctg-acgcgtatgtccgcatcat-cggattcgacaacatg-cgtcagg 677

                                            
Query: 515 gtgcagtgcgtcagcttcattcgccttcaagcc 547
            |||||||||||||||||| |||||||||||||
Sbjct: 678 -tgcagtgcgtcagcttca-tcgccttcaagcc 708



 Score =  141 bits (71), Expect = 3e-30
 Identities = 132/142 (92%), Gaps = 8/142 (5%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagtnccaccgccg 79
           |||||||||| ||||||||| |||| |||||||||||||||| ||||||| |||||||||
Sbjct: 16  atggcctcgt-cggccacct-ccgt-cgctcctttccagggg-ctcaagt-ccaccgccg 70

                                                                       
Query: 80  gcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaacggtggn 139
           ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| 
Sbjct: 71  gcctccccgtcagccgccgctc-caacggcgctagcctcggcagcgtcagcaacggtgg- 128

                                 
Query: 140 aaggnatcaggtgcatgcaggt 161
           |||| |||||||||||||||||
Sbjct: 129 aagg-atcaggtgcatgcaggt 149

---

>dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p2-1
          Length = 653

 Score =  141 bits (71), Expect = 3e-30
 Identities = 340/393 (86%), Gaps = 38/393 (9%)
 Strand = Plus / Plus

                                                                       
Query: 155 tgcaggtgtggcccatcgaggggcatcaagnaagttcgagnacccctgtctttacttgcc 214
           ||||||||||||||||||| |||||| ||| |||||||||   |||||||  ||| ||||
Sbjct: 268 tgcaggtgtggcccatcga-gggcattaag-aagttcgaga--ccctgtc-ctacctgcc 322

                                                                       
Query: 215 accacttcagcacgggaggccctcctttaagcagggtcgactaccttgatccgcttccaa 274
           ||| | |||||||  |||||||||| | ||||| ||||||||||| |||||||| |||||
Sbjct: 323 accgc-tcagcac-agaggccctcc-tcaagca-ggtcgactacc-tgatccgc-tccaa 376

                                                                       
Query: 275 gtgggtgcctttgccttcgagttcagcaaggtttgggtttcattctttccgtgagcacaa 334
           ||||||||| ||||| ||||||||||||||| |||||||| ||   ||||||||||||||
Sbjct: 377 gtgggtgcc-ttgcc-tcgagttcagcaagg-ttgggttt-at--cttccgtgagcacaa 430

                                                                       
Query: 335 cgcattctccctgggtactacgatgggcccggtactggacaatgtgggaagctgccctta 394
           |||||   ||||||||||||||||||  ||||||||||||||||| ||||||||||  ||
Sbjct: 431 cgcat--cccctgggtactacgatgg--ccggtactggacaatgt-ggaagctgcc--ta 483

                                                                       
Query: 395 tgtttcgggatgcacccgacgcccaccacaggtgctcaacgaggtggagggagggtcaag 454
           || |||||| |||| ||||||||   | |||||| |||||||||||||||   |||||||
Sbjct: 484 tg-ttcggg-tgca-ccgacgcc--acgcaggtgatcaacgaggtggagg--aggtcaag 536

                                                                       
Query: 455 naagggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagg 514
            |  |||||||||| ||||||||||||||||||| |||||||||||||||| ||| || |
Sbjct: 537 aa--ggagtaccct-gacgcgtatgtccgcatca-tcggattcgacaacat-gcgcca-g 590

                                            
Query: 515 gtgcagtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||||||| |||||||||||||
Sbjct: 591 gtgcagtgcgtcagcttca-tcgccttcaagcc 622



 Score =  133 bits (67), Expect = 8e-28
 Identities = 131/142 (92%), Gaps = 8/142 (5%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagtnccaccgccg 79
           |||||||||| ||||||||| |||| |||||||||||||||| ||||||| |||||||||
Sbjct: 16  atggcctcgt-cggccacct-ccgt-cgctcctttccagggg-ctcaagt-ccaccgccg 70

                                                                       
Query: 80  gcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaacggtggn 139
           ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| 
Sbjct: 71  gcctccccgtcagccgccgctc-caacggcgctagcctcggcagcgtcagcaacggtgg- 128

                                 
Query: 140 aaggnatcaggtgcatgcaggt 161
           |||| |||||| ||||||||||
Sbjct: 129 aagg-atcaggcgcatgcaggt 149

---

>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 246/287 (85%), Gaps = 28/287 (9%)
 Strand = Plus / Plus

                                                                       
Query: 261 tgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtttgggtttcattct 320
           ||||||||| ||||||||||||||| ||||| ||||||||||||||  ||  |||||   
Sbjct: 53  tgatccgct-ccaagtgggtgcctt-gcctt-gagttcagcaaggtcggg--ttcatc-- 105

                                                                       
Query: 321 ttccgtgagcacaacgcattctccctgggtactacgatgggcccggtactggacaatgtg 380
           |||||||||||||| || | ||||| ||||||||||| ||  ||| ||||||||||||||
Sbjct: 106 ttccgtgagcacaatgcgt-ctccc-gggtactacgacgg--ccgctactggacaatgtg 161

                                                                       
Query: 381 ggaagctgcccttatgtttcgggatgcacccgacgcccaccacaggtgctcaacgaggtg 440
           | ||||||||  |||||| |||| |||||| ||||||   |||||||| |||||||||||
Sbjct: 162 g-aagctgcc--tatgtt-cggg-tgcacc-gacgcca--cacaggtgatcaacgaggtg 213

                                                                       
Query: 441 gagggagggtcaagnaagggagtaccctggacgcgtatgtccgcatcattcggattcgac 500
           ||||   ||||||| |  ||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 214 gagga--ggtcaagaa--ggagtaccctg-acgcgtacgtccgcatcat-cggattcgac 267

                                                          
Query: 501 aacatggcgtcagggtgcagtgcgtcagcttcattcgccttcaagcc 547
           |||||| || |||| |||||||||||||||||||| |||||||||||
Sbjct: 268 aacatg-cgccagg-tgcagtgcgtcagcttcatt-gccttcaagcc 311

---

>dbj|AK099574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036G21, full
           insert sequence
          Length = 947

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 138/158 (87%), Gaps = 9/158 (5%)
 Strand = Plus / Plus

                                                                       
Query: 10  cccaccgtgnatggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagt 69
           ||||||||| |||||||||| ||||||||| ||||  ||||| ||||||||| ||||| |
Sbjct: 75  cccaccgtg-atggcctcgt-cggccacct-ccgtt-gctcccttccagggg-ctcaaat 129

                                                                       
Query: 70  nccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcag 129
            |||||||||| ||||||||||||||||||||  ||| | ||  ||||||||||||||||
Sbjct: 130 -ccaccgccgggctccccgtcagccgccgctc-caacagcgccggcctcggcagcgtcag 187

                                                 
Query: 130 caacggtggnaaggnatcaggtgcatgcaggtgtggcc 167
           ||||||||| |||| ||||| || ||||||||||||||
Sbjct: 188 caacggtgg-aagg-atcagctgtatgcaggtgtggcc 223

---

>gb|AF192780.1|AF192780 Avena maroccana clone Ma7 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 118/136 (86%), Gaps = 9/136 (6%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||  | ||   |||  |||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgca-gcaa---tgccggcctc 93

                                                                       
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggc 178
           ||||||||||||||||| || |||| ||||||||||||||||||||||| || || ||||
Sbjct: 94  ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggtgtggccaattga-gggc 150

                           
Query: 179 atcaagnaagttcgag 194
           |||||| |||||||||
Sbjct: 151 atcaag-aagttcgag 165



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 78/89 (87%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| ||||| |||||||| ||| |||||||||||  ||||| | |||
Sbjct: 399 ggagtaccctg-acgcctatgttcgcatcat-cggcttcgacaacatc-cgtcaag-tgc 454

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||| ||||||||
Sbjct: 455 agtgcgtcagcttca-tcgcattcaagcc 482

---

>gb|AF192775.1|AF192775 Avena strigosa clone Str5 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 139/162 (85%), Gaps = 12/162 (7%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||  | ||   |||  |||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgca-gcaa---tgccggcctc 93

                                                                       
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggc 178
           ||||||||||||||||| || |||| ||||||||||||||||||||||| || ||||| |
Sbjct: 94  ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggtgtggccgattgaggg-c 150

                                                     
Query: 179 atcaagnaagttcgagnacccctgtctttacttgccaccact 220
           |||||| |||||||||   |||| |||| |||||||||||||
Sbjct: 151 atcaag-aagttcgaga--ccctttctt-acttgccaccact 188



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 77/87 (88%), Gaps = 5/87 (5%)
 Strand = Plus / Plus

                                                                       
Query: 461 agtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgcag 520
           ||||||||| |||| ||||| |||||||| ||| |||| ||||||  ||||||| |||||
Sbjct: 401 agtaccctg-acgcctatgttcgcatcat-cggcttcgtcaacatc-cgtcagg-tgcag 456

                                      
Query: 521 tgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||| |||||||||||||
Sbjct: 457 tgcgtcagcttca-tcgccttcaagcc 482

---

>gb|AF192774.1|AF192774 Avena strigosa clone Str3 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 139/162 (85%), Gaps = 12/162 (7%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||  | ||   |||  |||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgca-gcaa---tgccggcctc 93

                                                                       
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggc 178
           ||||||||||||||||| || |||| ||||||||||||||||||||||| || ||||| |
Sbjct: 94  ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggtgtggccgattgaggg-c 150

                                                     
Query: 179 atcaagnaagttcgagnacccctgtctttacttgccaccact 220
           |||||| |||||||||   |||| |||| |||||||||||||
Sbjct: 151 atcaag-aagttcgaga--ccctttctt-acttgccaccact 188



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 77/87 (88%), Gaps = 5/87 (5%)
 Strand = Plus / Plus

                                                                       
Query: 461 agtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgcag 520
           ||||||||| |||| ||||| |||||||| ||| |||| ||||||  ||||||| |||||
Sbjct: 401 agtaccctg-acgcctatgttcgcatcat-cggcttcgtcaacatc-cgtcagg-tgcag 456

                                      
Query: 521 tgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||| |||||||||||||
Sbjct: 457 tgcgtcagcttca-tcgccttcaagcc 482

---

>gb|AF097360.1|AF097360 Avena strigosa ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) mRNA, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 504

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 139/162 (85%), Gaps = 12/162 (7%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||  | ||   |||  |||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgca-gcaa---tgccggcctc 93

                                                                       
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggc 178
           ||||||||||||||||| || |||| ||||||||||||||||||||||| || ||||| |
Sbjct: 94  ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggtgtggccgattgaggg-c 150

                                                     
Query: 179 atcaagnaagttcgagnacccctgtctttacttgccaccact 220
           |||||| |||||||||   |||| |||| |||||||||||||
Sbjct: 151 atcaag-aagttcgaga--ccctttctt-acttgccaccact 188



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 77/87 (88%), Gaps = 5/87 (5%)
 Strand = Plus / Plus

                                                                       
Query: 461 agtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgcag 520
           ||||||||| |||| ||||| |||||||| ||| |||| ||||||  ||||||| |||||
Sbjct: 401 agtaccctg-acgcctatgttcgcatcat-cggcttcgtcaacatc-cgtcagg-tgcag 456

                                      
Query: 521 tgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||| |||||||||||||
Sbjct: 457 tgcgtcagcttca-tcgccttcaagcc 482

---

>gb|AF104250.1|AF104250 Avena maroccana ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) mRNA, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 504

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 118/136 (86%), Gaps = 9/136 (6%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||  | ||   |||  |||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgca-gcaa---tgccggcctc 93

                                                                       
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggc 178
           ||||||||||||||||| || |||| ||||||||||||||||||||||| || || ||||
Sbjct: 94  ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggtgtggccaattga-gggc 150

                           
Query: 179 atcaagnaagttcgag 194
           |||||| |||||||||
Sbjct: 151 atcaag-aagttcgag 165



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 108/127 (85%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 365 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 419

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
            |||||||| ||| |||||||||||  ||||| | |||||||||||||||||| |||| |
Sbjct: 420 tcgcatcat-cggcttcgacaacatc-cgtcaag-tgcagtgcgtcagcttca-tcgcat 475

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 476 tcaagcc 482

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 113/129 (87%), Gaps = 7/129 (5%)
 Strand = Plus / Plus

                                                                            
Query: 10       cccaccgtgnatggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagt 69
                ||||||||| |||||||||| ||||||||| ||||  ||||| ||||||||| ||||| |
Sbjct: 11276336 cccaccgtg-atggcctcgt-cggccacct-ccgtt-gctcccttccagggg-ctcaaat 11276390

                                                                            
Query: 70       nccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcag 129
                 |||||||||| ||||||||||||||||||||  ||| | ||  ||||||||||||||||
Sbjct: 11276391 -ccaccgccgggctccccgtcagccgccgctc-caacagcgccggcctcggcagcgtcag 11276448

                         
Query: 130      caacggtgg 138
                |||||||||
Sbjct: 11276449 caacggtgg 11276457



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 50/55 (90%), Gaps = 2/55 (3%)
 Strand = Plus / Plus

                                                                       
Query: 47       gctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
                ||||| ||||||||| ||||||| |||||||||||||||| || |||||||||||
Sbjct: 11264750 gctccattccagggg-ctcaagt-ccaccgccggcctcccagtgagccgccgctc 11264802



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 71       ccaccgccggcctccccgtcagccgccgctc 101
                |||||||||| ||||||||||||||||||||
Sbjct: 11261734 ccaccgccgggctccccgtcagccgccgctc 11261764



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                      
Query: 270      tccaagtgggtgcctttgccttcgagttcagcaaggtt 307
                |||||||||||||||| |||| ||||||||||||||||
Sbjct: 11262030 tccaagtgggtgcctt-gcct-cgagttcagcaaggtt 11262065



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 49/56 (87%), Gaps = 2/56 (3%)
 Strand = Plus / Minus

                                                                        
Query: 46       cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
                |||||| ||||||||| ||||||| ||||||||||| | ||||||  |||||||||
Sbjct: 10080362 cgctcccttccagggg-ctcaagt-ccaccgccggcatgcccgtcgcccgccgctc 10080309

---

>gb|AF097361.1|AF097361 Avena clauda ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) mRNA, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 504

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 115/136 (84%), Gaps = 9/136 (6%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||    | |   || ||||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgc----agctccgccagcctc 93

                                                                       
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggc 178
           |||||||||||||||||||| |  | ||||| ||||||||||||||||| || || ||||
Sbjct: 94  ggcagcgtcagcaacggtggaa--gaatcagatgcatgcaggtgtggccgattga-gggc 150

                           
Query: 179 atcaagnaagttcgag 194
           |||||| |||||||||
Sbjct: 151 atcaag-aagttcgag 165



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 79/89 (88%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| |||||||||||  ||||| | |||
Sbjct: 399 ggagtaccctg-acgcctatgtccgcatcat-cggcttcgacaacatc-cgtcaag-tgc 454

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           |||| |||||||||| |||||||||||||
Sbjct: 455 agtgtgtcagcttca-tcgccttcaagcc 482

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 113/129 (87%), Gaps = 7/129 (5%)
 Strand = Plus / Plus

                                                                            
Query: 10       cccaccgtgnatggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagt 69
                ||||||||| |||||||||| ||||||||| ||||  ||||| ||||||||| ||||| |
Sbjct: 11276007 cccaccgtg-atggcctcgt-cggccacct-ccgtt-gctcccttccagggg-ctcaaat 11276061

                                                                            
Query: 70       nccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcag 129
                 |||||||||| ||||||||||||||||||||  ||| | ||  ||||||||||||||||
Sbjct: 11276062 -ccaccgccgggctccccgtcagccgccgctc-caacagcgccggcctcggcagcgtcag 11276119

                         
Query: 130      caacggtgg 138
                |||||||||
Sbjct: 11276120 caacggtgg 11276128



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 50/55 (90%), Gaps = 2/55 (3%)
 Strand = Plus / Plus

                                                                       
Query: 47       gctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
                ||||| ||||||||| ||||||| |||||||||||||||| || |||||||||||
Sbjct: 11264421 gctccattccagggg-ctcaagt-ccaccgccggcctcccagtgagccgccgctc 11264473



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 71       ccaccgccggcctccccgtcagccgccgctc 101
                |||||||||| ||||||||||||||||||||
Sbjct: 11261405 ccaccgccgggctccccgtcagccgccgctc 11261435



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                      
Query: 270      tccaagtgggtgcctttgccttcgagttcagcaaggtt 307
                |||||||||||||||| |||| ||||||||||||||||
Sbjct: 11261701 tccaagtgggtgcctt-gcct-cgagttcagcaaggtt 11261736



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 49/56 (87%), Gaps = 2/56 (3%)
 Strand = Plus / Minus

                                                                        
Query: 46       cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
                |||||| ||||||||| ||||||| ||||||||||| | ||||||  |||||||||
Sbjct: 10080247 cgctcccttccagggg-ctcaagt-ccaccgccggcatgcccgtcgcccgccgctc 10080194

---

>emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127267

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 113/129 (87%), Gaps = 7/129 (5%)
 Strand = Plus / Minus

                                                                         
Query: 10    cccaccgtgnatggcctcgtncggccacctnccgtncgctcctttccaggggnctcaagt 69
             ||||||||| |||||||||| ||||||||| ||||  ||||| ||||||||| ||||| |
Sbjct: 95718 cccaccgtg-atggcctcgt-cggccacct-ccgtt-gctcccttccagggg-ctcaaat 95664

                                                                         
Query: 70    nccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcag 129
              |||||||||| ||||||||||||||||||||  ||| | ||  ||||||||||||||||
Sbjct: 95663 -ccaccgccgggctccccgtcagccgccgctc-caacagcgccggcctcggcagcgtcag 95606

                      
Query: 130   caacggtgg 138
             |||||||||
Sbjct: 95605 caacggtgg 95597



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 71     ccaccgccggcctccccgtcagccgccgctc 101
              |||||||||| ||||||||||||||||||||
Sbjct: 110320 ccaccgccgggctccccgtcagccgccgctc 110290



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 50/55 (90%), Gaps = 2/55 (3%)
 Strand = Plus / Minus

                                                                     
Query: 47     gctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
              ||||| ||||||||| ||||||| |||||||||||||||| || |||||||||||
Sbjct: 107304 gctccattccagggg-ctcaagt-ccaccgccggcctcccagtgagccgccgctc 107252



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Minus

                                                    
Query: 270    tccaagtgggtgcctttgccttcgagttcagcaaggtt 307
              |||||||||||||||| |||| ||||||||||||||||
Sbjct: 110024 tccaagtgggtgcctt-gcct-cgagttcagcaaggtt 109989

---

>emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5
          Length = 845

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 200/235 (85%), Gaps = 16/235 (6%)
 Strand = Plus / Plus

                                                                       
Query: 73  accgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaa 132
           |||||||||||||||||| ||||||||||    | | ||  ||||| |||||||||||||
Sbjct: 131 accgccggcctccccgtcggccgccgctccgg-cagcgccggcctcagcagcgtcagcaa 189

                                                                       
Query: 133 cggtggnaaggnatcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcg 192
           ||| || |||| ||||| ||||||||||||||||| || || |||||||||| |||||||
Sbjct: 190 cggcgg-aagg-atcagatgcatgcaggtgtggccaattga-gggcatcaag-aagttcg 245

                                                                       
Query: 193 agnacccctgtctttacttgccaccacttcagcacgggaggccctcctttaagcagggtc 252
           ||   ||||||| |||||||||||| | ||  ||| ||||||||||| | ||||| ||||
Sbjct: 246 aga--ccctgtc-ttacttgccacc-cctctccac-ggaggccctcc-tgaagca-ggtc 298

                                                                  
Query: 253 gactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           ||||||| |||||||| ||||||||||||||  |||| |||||||||||||||||
Sbjct: 299 gactacc-tgatccgc-tccaagtgggtgcc-ctgcc-tcgagttcagcaaggtt 349



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 98/113 (86%), Gaps = 8/113 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||| ||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 449 caggtgctcaatgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 503

                                                                
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcatt 535
           || |||| ||| |||||||||||| || |||| ||||||||||||||||||||
Sbjct: 504 gcgtcat-cggcttcgacaacatg-cgccagg-tgcagtgcgtcagcttcatt 553

---

>gb|AF192779.1|AF192779 Avena maroccana clone Ma4 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 111/127 (87%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 365 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 419

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| ||| |||||||||||  ||||||| |||||||||||||||||| ||||||
Sbjct: 420 ccgcatcat-cggcttcgacaacatc-cgtcagg-tgcagtgcgtcagcttca-tcgcct 475

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 476 tcaagcc 482



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/81 (86%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           |||| |||||||||||||||||||| |  | ||| | ||||||||||||||||| || ||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggccgattga 146

                                
Query: 174 ggggcatcaagnaagttcgag 194
            |||||||||| |||||||||
Sbjct: 147 -gggcatcaag-aagttcgag 165

---

>gb|AF192777.1|AF192777 Avena clauda clone Cl9 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 75/82 (91%), Gaps = 4/82 (4%)
 Strand = Plus / Plus

                                                                       
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcg 172
           |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| || |
Sbjct: 88  agcctcggcaacgtcagcaacggtgg-aagg-atcaggtgcatgcaggtgtggccgattg 145

                                 
Query: 173 aggggcatcaagnaagttcgag 194
           | |||||||||| |||||||||
Sbjct: 146 a-gggcatcaag-aagttcgag 165



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 80/89 (89%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| |||||||||||  ||||| | |||
Sbjct: 399 ggagtaccctg-acgcctatgtccgcatcat-cggcttcgacaacatc-cgtcaag-tgc 454

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 455 agtgcgtcagcttca-tcgccttcaagcc 482

---

>gb|AF192776.1|AF192776 Avena clauda clone Cl5 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 111/127 (87%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 365 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 419

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| ||| |||||||||||  ||||||| |||||||||||||||||| ||||||
Sbjct: 420 ccgcatcat-cggcttcgacaacatc-cgtcagg-tgcagtgcgtcagcttca-tcgcct 475

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 476 tcaagcc 482



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/81 (86%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           |||| |||||||||||||||||||| |  | ||| | ||||||||||||||||| || ||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggccgattga 146

                                
Query: 174 ggggcatcaagnaagttcgag 194
            |||||||||| |||||||||
Sbjct: 147 -gggcatcaag-aagttcgag 165

---

>dbj|AB020952.1| Aegilops searsii DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Sea-B
          Length = 728

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 108/123 (87%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| |||||||||||
Sbjct: 596 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcgtatgt 650

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 651 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 706

              
Query: 541 tca 543
           |||
Sbjct: 707 tca 709



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 93/109 (85%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||    | | |  
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc----cagcggc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 444 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 498

---

>gb|AF096617.1|AF096617 Avena sterilis subsp. ludoviciana ribulose-1,5-bisphosphate
           carboxylase small subunit (rbcS) mRNA, partial cds
          Length = 504

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 81/89 (91%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| |||||||||||  ||||||| |||
Sbjct: 399 ggagtaccctg-acgcctatgtccgcatcat-cggcttcgacaacatc-cgtcagg-tgc 454

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 455 agtgcgtcagcttca-tcgccttcaagcc 482



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/81 (86%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           |||| |||||||||||||||||||| |  | ||| | ||||||||||||||||| || ||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggcctattga 146

                                
Query: 174 ggggcatcaagnaagttcgag 194
            |||||||||| |||||||||
Sbjct: 147 -gggcatcaag-aagttcgag 165

---

>dbj|AB020945.1| Avena sativa DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Ave-A
          Length = 590

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 81/89 (91%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| |||||||||||  ||||||| |||
Sbjct: 492 ggagtaccctg-acgcctatgtccgcatcat-cggtttcgacaacatc-cgtcagg-tgc 547

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 548 agtgcgtcagcttca-tcgccttcaagcc 575



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Plus

                                                           
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           ||||||||| ||||||||||||||| |||| ||||| |||||||||||
Sbjct: 90  gcctcggcaacgtcagcaacggtgg-aagg-atcagatgcatgcaggt 135

---

>emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putative rubisco small
           subunit (rbcS gene)
          Length = 518

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 168/194 (86%), Gaps = 15/194 (7%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           ||||| |||||||||||||||| || |||| ||||||||||||||||||||||| || ||
Sbjct: 94  gcctcagcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggtgtggccgattga 151

                                                                       
Query: 174 ggggcatcaagnaagttcgagnacccctgtctttacttgccaccacttcagcacgggagg 233
            |||||||||| |||||||||   ||||||| |||| ||||||| | ||  ||| |||||
Sbjct: 152 -gggcatcaag-aagttcgaga--ccctgtc-ttacctgccacc-cctctccac-ggagg 204

                                                                       
Query: 234 ccctcctttaagcagggtcgactaccttgatccgcttccaagtgggtgcctttgccttcg 293
           |||||| | ||||| ||||||||| |||||||||| ||||||||||||||  |||| |||
Sbjct: 205 ccctcc-tgaagca-ggtcgacta-cttgatccgc-tccaagtgggtgcc-ctgcc-tcg 258

                         
Query: 294 agttcagcaaggtt 307
           ||||||||||||||
Sbjct: 259 agttcagcaaggtt 272



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 107/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 370 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 424

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 425 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 480

              
Query: 541 tca 543
           |||
Sbjct: 481 tca 483

---

>gb|AF202646.1|AF202646 Avena clauda clone ClG4 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) gene, partial cds
          Length = 586

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 110/127 (86%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 447 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 501

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| ||| |||||||||||  ||||| | |||||||||||||||||| ||||||
Sbjct: 502 ccgcatcat-cggcttcgacaacatc-cgtcaag-tgcagtgcgtcagcttca-tcgcct 557

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 558 tcaagcc 564



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 46/49 (93%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct: 88  agcctcggcagcgtcagcaacggtgg-aagg-atcagatgcatgcaggt 134

---

>gb|AF192773.1|AF192773 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 110/127 (86%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 365 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 419

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| ||| |||||||||||  ||||||| ||||||| |||||||||| ||||||
Sbjct: 420 ccgcatcat-cggcttcgacaacatc-cgtcagg-tgcagtgtgtcagcttca-tcgcct 475

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 476 tcaagcc 482



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/81 (86%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           |||| |||||||||||||||||||| |  | ||| | ||||||||||||||||| || ||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggccgattga 146

                                
Query: 174 ggggcatcaagnaagttcgag 194
            |||||||||| |||||||||
Sbjct: 147 -gggcatcaag-aagttcgag 165

---

>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 107/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                        
Query: 421  cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
            ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 1361 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 1415

                                                                        
Query: 481  ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
            |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 1416 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 1471

               
Query: 541  tca 543
            |||
Sbjct: 1472 tca 1474



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 89/103 (86%), Gaps = 7/103 (6%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| |||| |||||||| |||||||||||||||||     || || ||||||
Sbjct: 746 gggtctcaagt-ccacagccggcctgcccgtcagccgccgctcca---ggggc-agcctc 800

                                                      
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           ||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 801 ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggt 841



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                       
Query: 249  ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
            |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 1209 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 1263

---

>dbj|AB020955.1| Triticum timopheevii subsp. armeniacum DNA for
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit, partial cds, clone Ara-B
          Length = 787

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 107/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 655 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 709

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 710 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 765

              
Query: 541 tca 543
           |||
Sbjct: 766 tca 768



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 93/109 (85%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| |||||||| |||||||||||||||||    | | |  
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggcctgcccgtcagccgccgctc----cagcggc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 503 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 557

---

>dbj|AB020954.1| Triticum urartu DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Ura-B
          Length = 787

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 107/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 655 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 709

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 710 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 765

              
Query: 541 tca 543
           |||
Sbjct: 766 tca 768



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 93/109 (85%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| |||||||| |||||||||||||||||    | | |  
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggcctgcccgtcagccgccgctc----cagcggc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 503 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 557

---

>dbj|AB020953.1| Aegilops squarrosa DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Squ-B
          Length = 781

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 107/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 649 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 703

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 704 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 759

              
Query: 541 tca 543
           |||
Sbjct: 760 tca 762



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 94/109 (86%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||||||||| ||||||||||||||||||||    | | |  
Sbjct: 35  ttccagggg-ctcaagt-ccaccgccggtctccccgtcagccgccgctc----cagcggc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 53/58 (91%), Gaps = 4/58 (6%)
 Strand = Plus / Plus

                                                                     
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggt 306
           |||||||||||| |||||||| ||||||||||||| | |||| |||||||||||||||
Sbjct: 497 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggt 550

---

>dbj|AB020935.1| Aegilops sharonensis DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Sha-A
          Length = 605

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 107/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 473 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 527

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||| ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 528 ccgcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 583

              
Query: 541 tca 543
           |||
Sbjct: 584 tca 586



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||| |||||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 321 ggtcgactac-ttgatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 375

---

>gb|AF202645.1|AF202645 Avena clauda clone ClG2 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) gene, partial cds
          Length = 600

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 80/89 (89%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| |||||||||||  ||||| | |||
Sbjct: 495 ggagtaccctg-acgcctatgtccgcatcat-cggcttcgacaacatc-cgtcaag-tgc 550

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 551 agtgcgtcagcttca-tcgccttcaagcc 578



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 43/49 (87%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           ||||| |||||||||||||||||||| |  | ||||| |||||||||||
Sbjct: 88  agcctgggcagcgtcagcaacggtggaa--gaatcagatgcatgcaggt 134

---

>gb|AF200303.1|AF200303 Avena clauda ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) gene, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 594

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 80/89 (89%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| |||||||||||  ||||| | |||
Sbjct: 489 ggagtaccctg-acgcctatgtccgcatcat-cggcttcgacaacatc-cgtcaag-tgc 544

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 545 agtgcgtcagcttca-tcgccttcaagcc 572



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 45/48 (93%), Gaps = 2/48 (4%)
 Strand = Plus / Plus

                                                           
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 89  gcctcggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggt 134

---

>gb|AF097359.1|AF097359 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/82 (87%), Gaps = 4/82 (4%)
 Strand = Plus / Plus

                                                                       
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcg 172
           |||||||||||||||||||||||||| |  | ||| | ||||||||||||||||| || |
Sbjct: 88  agcctcggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggccgattg 145

                                 
Query: 173 aggggcatcaagnaagttcgag 194
           | |||||||||| |||||||||
Sbjct: 146 a-gggcatcaag-aagttcgag 165



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 108/127 (85%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 365 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 419

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| ||| || ||||||||  ||||| | ||||||| |||||||||| ||||||
Sbjct: 420 ccgcatcat-cggcttagacaacatc-cgtcaag-tgcagtgtgtcagcttca-tcgcct 475

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 476 tcaagcc 482



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                               
Query: 59 gggnctcaagtnccaccgccggcctccccgtcagccg 95
          ||| ||||||| ||||||| |||||||||||||||||
Sbjct: 39 gggcctcaagt-ccaccgctggcctccccgtcagccg 74

---

>dbj|AB020958.1| Triticum aestivum DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           CS-B2
          Length = 781

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 94/109 (86%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||    | | || 
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc----cagcgcc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatgg-gggaagg-atcaggtgcatgcaggt 135



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 106/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 649 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 703

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||  ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 704 ccgtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 759

              
Query: 541 tca 543
           |||
Sbjct: 760 tca 762



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 497 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 551

---

>dbj|AB020960.1| Bromus catharticus DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Bro-B
          Length = 784

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 80/89 (89%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| |||||||||||||| ||| ||||| ||| || ||||||| |||
Sbjct: 686 ggagtaccctg-acgcctatgtccgcatcat-cggtttcgataacttg-cgtcagg-tgc 741

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 742 agtgcgtcagcttca-tcgccttcaagcc 769



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                      
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct: 40  gggtctcaagt-ccaccgccggcctgcccgtcagccgccgctc 81



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 105/123 (85%), Gaps = 11/123 (8%)
 Strand = Plus / Plus

                                                                       
Query: 259 cttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtttgggtttcatt 318
           ||||||||||| ||||||||||||| | |||| ||||||||||||||||  || ||| | 
Sbjct: 509 cttgatccgct-ccaagtgggtgccgt-gcct-cgagttcagcaaggtt--ggcttcgt- 562

                                                                       
Query: 319 ctttccgtgagcacaacgcattctccctgggtactacgatgggcccggtactggacaatg 378
             |||||||||||||| ||| ||| ||||| |||||||||||  ||| ||||||||||||
Sbjct: 563 -cttccgtgagcacaatgca-tct-cctggatactacgatgg--ccgttactggacaatg 617

              
Query: 379 tgg 381
           |||
Sbjct: 618 tgg 620

---

>gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase
           (RUBISCO) gene, complete cds
          Length = 779

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 167/194 (86%), Gaps = 15/194 (7%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           ||||| ||||||||||||| || || |||| ||||| ||||||||||||||||| || ||
Sbjct: 161 gcctcagcagcgtcagcaatggcgg-aagg-atcagatgcatgcaggtgtggccaattga 218

                                                                       
Query: 174 ggggcatcaagnaagttcgagnacccctgtctttacttgccaccacttcagcacgggagg 233
            |||||||||| |||||||||   ||||||| |||||||||||| | ||  ||| |||||
Sbjct: 219 -gggcatcaag-aagttcgaga--ccctgtc-ttacttgccacc-cctctccac-ggagg 271

                                                                       
Query: 234 ccctcctttaagcagggtcgactaccttgatccgcttccaagtgggtgcctttgccttcg 293
           |||| ||| ||||| ||||||||| |||||||||| ||||||||||||||  |||| |||
Sbjct: 272 ccct-cttgaagca-ggtcgacta-cttgatccgc-tccaagtgggtgcc-ctgcc-tcg 325

                         
Query: 294 agttcagcaaggtt 307
           ||||||||||||||
Sbjct: 326 agttcagcaaggtt 339



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 99/115 (86%), Gaps = 8/115 (6%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||| ||| |  ||||||||||| | ||||||||
Sbjct: 437 cacaggtgctcaacgaggtggagga--ggttaagaa--ggagtaccctg-atgcgtatgt 491

                                                                  
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcatt 535
           |||| |||| ||| |||||||||||| || |||| |||| |||||||||||||||
Sbjct: 492 ccgcgtcat-cggtttcgacaacatg-cgccagg-tgcaatgcgtcagcttcatt 543



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 73  accgccggcctccccgtcagccgccgctc 101
           ||||||||||||||| ||||| |||||||
Sbjct: 121 accgccggcctccccatcagctgccgctc 149

---

>dbj|AB020946.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe1-B
          Length = 787

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 94/109 (86%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||    | | || 
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc----cagcgcc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 503 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 557



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 104/123 (84%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||||||| |||||||||||   ||||||| |  |||||||||| || || |||||
Sbjct: 655 cacaggtgctcagcgaggtggagg--aggtcaagaa--ggagtaccct-gatgcctatgt 709

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||  ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 710 ccgtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 765

              
Query: 541 tca 543
           |||
Sbjct: 766 tca 768

---

>dbj|AB020944.1| Agropyron intermedium DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Agr-A
          Length = 604

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 105/121 (86%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||||
Sbjct: 474 caggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgtcc 528

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           || ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||||
Sbjct: 529 gcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgccttc 584

            
Query: 543 a 543
           |
Sbjct: 585 a 585



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 320 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 374

---

>dbj|AB020943.1| Hordeum vulgare DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Hor-A
          Length = 605

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 94/109 (86%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||    | | || 
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc----cagcgcc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 105/123 (85%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||||| |||||||||||||   ||||||| |  ||||||||||| |||| || ||
Sbjct: 473 cacaggtgcttaacgaggtggagga--ggtcaagaa--ggagtaccctg-acgcttacgt 527

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||| ||||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||
Sbjct: 528 ccgtatcat-cggcttcgacaacctg-cggcagg-tgcagtgcgtcagcttca-tcgcct 583

              
Query: 541 tca 543
           |||
Sbjct: 584 tca 586

---

>gb|AF202648.1|AF202648 Avena maroccana ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) gene, partial cds
          Length = 620

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 89/103 (86%), Gaps = 7/103 (6%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgctagcctc 118
           ||| ||||||| ||||||| |||||||||||||||||||||  | ||   |||  |||||
Sbjct: 39  gggcctcaagt-ccaccgctggcctccccgtcagccgccgca-gcaa---tgccggcctc 93

                                                      
Query: 119 ggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           ||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 94  ggcagcgtcagcaacggcgg-aagg-atcaggtgcatgcaggt 134



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 108/127 (85%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 481 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 535

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
            |||||||| ||| |||||||||||  ||||| | |||||||||||||||||| |||| |
Sbjct: 536 tcgcatcat-cggcttcgacaacatc-cgtcaag-tgcagtgcgtcagcttca-tcgcat 591

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 592 tcaagcc 598

---

>dbj|AB020938.1| Aegilops squarrosa DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Squ-A
          Length = 607

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/112 (86%), Gaps = 8/112 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||||
Sbjct: 477 caggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgtcc 531

                                                               
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
           || ||| |||| ||||||||| | ||| || |||||||||||||||||||||
Sbjct: 532 gcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttcat 580



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135

---

>dbj|AB020937.1| Aegilops searsii DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Sea-A
          Length = 611

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/112 (86%), Gaps = 8/112 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||| ||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 481 caggtgctcaatgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 535

                                                               
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
           || |||| ||| ||||||||| || ||||||| |||||||||||||||||||
Sbjct: 536 gcgtcat-cggcttcgacaacctg-cgtcagg-tgcagtgcgtcagcttcat 584



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc 81

---

>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit, complete cds,
            clone:6, subclone:16
          Length = 5980

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/112 (86%), Gaps = 8/112 (7%)
 Strand = Plus / Plus

                                                                        
Query: 423  caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
            ||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||||
Sbjct: 1117 caggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgtcc 1171

                                                                
Query: 483  gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
            || ||| |||| ||||||||| | ||| || |||||||||||||||||||||
Sbjct: 1172 gcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttcat 1220



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 671 ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc 717



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                       
Query: 249  ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
            |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 963  ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 1017



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 94/111 (84%), Gaps = 8/111 (7%)
 Strand = Plus / Plus

                                                                        
Query: 424  aggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtccg 483
            |||||||||| ||||||||||   ||||||| |  ||||||||||| |||| |||||| |
Sbjct: 4179 aggtgctcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtctg 4233

                                                               
Query: 484  catcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
            |||||| ||| ||||||||| || || |||| || ||||||||||||||||
Sbjct: 4234 catcat-cggcttcgacaacctg-cgccagg-tgtagtgcgtcagcttcat 4281



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 421  cacaggtgctcaacgaggtggagg 444
            ||||||||||||| ||||||||||
Sbjct: 5519 cacaggtgctcaaggaggtggagg 5542

---

>dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase Small subunit, complete cds,
           clone:p6-1
          Length = 638

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/112 (86%), Gaps = 8/112 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||||
Sbjct: 492 caggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgtcc 546

                                                               
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
           || ||| |||| ||||||||| | ||| || |||||||||||||||||||||
Sbjct: 547 gcgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttcat 595



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 46  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc 92



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 338 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 392

---

>gb|AF192778.1|AF192778 Avena sterilis subsp. ludoviciana ribulose-1,5-bisphosphate
           carboxylase small subunit (rbcS) mRNA, nuclear gene
           encoding chloroplast protein, partial cds
          Length = 504

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 109/127 (85%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |||  ||||||||| |||| |||||
Sbjct: 365 cacaggtgatcaaggaggtggagga--ggtcaagaaag--agtaccctg-acgcctatgt 419

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           ||||||||| ||| |||||||||||  ||||| | ||||||||||||| |||| ||||||
Sbjct: 420 ccgcatcat-cggcttcgacaacatc-cgtcaag-tgcagtgcgtcagtttca-tcgcct 475

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 476 tcaagcc 482



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 54/63 (85%), Gaps = 2/63 (3%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           |||| |||||||||||||||||||| |  | ||| | ||||||||||||||||| || ||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggcctattga 146

              
Query: 174 ggg 176
           |||
Sbjct: 147 ggg 149

---

>dbj|AB020950.1| Aegilops sharonensis DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Sha-B
          Length = 792

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 106/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 660 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 714

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||  ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 715 ccgtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 770

              
Query: 541 tca 543
           |||
Sbjct: 771 tca 773



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/86 (84%), Gaps = 6/86 (6%)
 Strand = Plus / Plus

                                                                       
Query: 76  gccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaacgg 135
           ||||| ||||||||||||||||||||    | | || |||||||||||||||||||| ||
Sbjct: 56  gccggtctccccgtcagccgccgctc----cagcgccagcctcggcagcgtcagcaatgg 111

                                     
Query: 136 tggnaaggnatcaggtgcatgcaggt 161
            || |||| ||||||| |||||||||
Sbjct: 112 cgg-aagg-atcaggtacatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 508 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 562

---

>dbj|AB020949.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Lon-B
          Length = 792

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 106/123 (86%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 660 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 714

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||  ||| |||| ||||||||| | ||| || |||||||||||||||||||| ||||||
Sbjct: 715 ccgtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttca-tcgcct 770

              
Query: 541 tca 543
           |||
Sbjct: 771 tca 773



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/86 (86%), Gaps = 6/86 (6%)
 Strand = Plus / Plus

                                                                       
Query: 76  gccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaacgg 135
           ||||| ||||||||||||||||||||    | | || |||||||||||||||||||| ||
Sbjct: 56  gccggtctccccgtcagccgccgctc----cagcgccagcctcggcagcgtcagcaatgg 111

                                     
Query: 136 tggnaaggnatcaggtgcatgcaggt 161
            || |||| |||||||||||||||||
Sbjct: 112 cgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 508 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 562

---

>dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p13-1
          Length = 985

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 99/115 (86%), Gaps = 8/115 (6%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 837 cacaggtgctcaacgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 891

                                                                  
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcatt 535
           |||| ||| |||| ||||||||| |  || || ||||||||||||||||||||||
Sbjct: 892 ccgcgtca-tcggcttcgacaacct-acgcca-ggtgcagtgcgtcagcttcatt 943



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 77/89 (86%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                       
Query: 73  accgccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaa 132
           ||||||||||| |||||||||||||||||  | | | ||  ||||| |||||||||||||
Sbjct: 64  accgccggcctgcccgtcagccgccgctc-cagcagcgccggcctcagcagcgtcagcaa 122

                                        
Query: 133 cggtggnaaggnatcaggtgcatgcaggt 161
           ||| || |||| |||||||||||||||||
Sbjct: 123 cggcgg-aagg-atcaggtgcatgcaggt 149



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||| |||||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 685 ggtcgactac-ttgatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 739

---

>gb|AF104249.1|AF104249 Avena vaviloviana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 79/89 (88%), Gaps = 5/89 (5%)
 Strand = Plus / Plus

                                                                       
Query: 459 ggagtaccctggacgcgtatgtccgcatcattcggattcgacaacatggcgtcagggtgc 518
           ||||||||||| |||| ||||| |||||||| ||| |||||||||||  ||||| | |||
Sbjct: 399 ggagtaccctg-acgcctatgttcgcatcat-cggcttcgacaacatc-cgtcaag-tgc 454

                                        
Query: 519 agtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||| |||||||||||||
Sbjct: 455 agtgcgtcagcttca-tcgccttcaagcc 482



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/81 (86%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                       
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcccatcga 173
           |||| |||||||||||||||||||| |  | ||| | ||||||||||||||||| || ||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatccgatgcatgcaggtgtggcctattga 146

                                
Query: 174 ggggcatcaagnaagttcgag 194
            |||||||||| |||||||||
Sbjct: 147 -gggcatcaag-aagttcgag 165



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/49 (91%), Gaps = 3/49 (6%)
 Strand = Plus / Plus

                                                            
Query: 259 cttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           ||||||||||| |||||||||| |||| |||| ||||||||||||||||
Sbjct: 222 cttgatccgct-ccaagtgggttcctt-gcct-cgagttcagcaaggtt 267

---

>gb|AF039015.1|AF039015 Fritillaria agrestis clone TA1 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 595

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 45/48 (93%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  |||||||||||||||| |||||||||||
Sbjct: 487 cctgggtactacgatggg--cggtactggacaatgt-ggaagctgccc 531

---

>gb|AF039013.1|AF039013 Fritillaria agrestis clone TA26 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 595

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 45/48 (93%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  |||||||||||||||| |||||||||||
Sbjct: 487 cctgggtactacgatggg--cggtactggacaatgt-ggaagctgccc 531

---

>gb|AF024574.1|AF024574 Fritillaria agrestis ribulose 1,5 bisphosphate carboxylase, small
           subunit type III (rbcS3) mRNA, nuclear gene encoding
           chloroplast protein, complete cds
          Length = 798

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 45/48 (93%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  |||||||||||||||| |||||||||||
Sbjct: 367 cctgggtactacgatggg--cggtactggacaatgt-ggaagctgccc 411

---

>dbj|AB020934.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Lon-A3
          Length = 605

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/86 (86%), Gaps = 6/86 (6%)
 Strand = Plus / Plus

                                                                       
Query: 76  gccggcctccccgtcagccgccgctcgnaacggtgctagcctcggcagcgtcagcaacgg 135
           ||||| ||||||||||||||||||||    | | || |||||||||||||||||||| ||
Sbjct: 56  gccggtctccccgtcagccgccgctc----cagcgccagcctcggcagcgtcagcaatgg 111

                                     
Query: 136 tggnaaggnatcaggtgcatgcaggt 161
            || |||| |||||||||||||||||
Sbjct: 112 cgg-aagg-atcaggtgcatgcaggt 135



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 104/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||| ||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 475 caggtgctcaacgaggttgagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 529

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           || |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 530 gcgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 585

            
Query: 543 a 543
           |
Sbjct: 586 a 586



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 321 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 375

---

>dbj|AB020959.1| Secale cereale DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Sec-B
          Length = 789

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 104/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||| ||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 659 caggtgctcaatgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 713

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           || |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 714 gcgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 769

            
Query: 543 a 543
           |
Sbjct: 770 a 770



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 93/109 (85%), Gaps = 8/109 (7%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctcgnaacggtgct 112
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||    | | |  
Sbjct: 35  ttccagggg-ctcaagt-ccacggccggtctccccgtcagccgccgctc----cagcggc 88

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 505 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 559

---

>dbj|AB020936.1| Aegilops bicornis DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Bic-A
          Length = 605

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 104/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||| ||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 475 caggtgctcaacgaggttgagga--ggtcaagaa--ggagtaccctg-acgcttatgtcc 529

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           || |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 530 gcgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 585

            
Query: 543 a 543
           |
Sbjct: 586 a 586



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 321 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 375

---

>dbj|AB020933.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Lon-A2
          Length = 605

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 104/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||| ||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 475 caggtgctcaacgaggttgagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 529

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           || |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 530 gcgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 585

            
Query: 543 a 543
           |
Sbjct: 586 a 586



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 321 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 375

---

>dbj|AB020932.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Lon-A1
          Length = 605

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 104/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||||||||| ||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 475 caggtgctcaacgaggttgagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 529

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           || |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 530 gcgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 585

            
Query: 543 a 543
           |
Sbjct: 586 a 586



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 321 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 375

---

>gb|AY445627.1| Oryza sativa (japonica cultivar-group) ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit mRNA, complete cds;
           chloroplast
          Length = 860

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||||||||| ||||||||||||||||||||
Sbjct: 113 ccaccgccgggctccccgtcagccgccgctc 143



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 270 tccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||||||| |||| ||||||||||||||||
Sbjct: 298 tccaagtgggtgcctt-gcct-cgagttcagcaaggtt 333



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 45/50 (90%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           |||| |||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 184 atcaagtgcatgcaggtgtggccaattga-gggcatcaag-aagttcgag 231

---

>emb|X06535.1|ZMRUBSSU Maize mRNA for ribulose-1,5-bisphosphate carboxylase small subunit
           (RuBPC; EC 4.1.1.39)
          Length = 830

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 50/55 (90%), Gaps = 2/55 (3%)
 Strand = Plus / Plus

                                                                  
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcc 167
           |||||||||| |||||||||||| || |||| ||| |||||||||||||||||||
Sbjct: 168 agcctcggcaacgtcagcaacggcgg-aagg-atccggtgcatgcaggtgtggcc 220



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 50/56 (89%), Gaps = 2/56 (3%)
 Strand = Plus / Plus

                                                                   
Query: 46  cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           |||||| ||||||||| ||||||| |||||||| |||||||||||  |||||||||
Sbjct: 107 cgctccgttccagggg-ctcaagt-ccaccgccagcctccccgtcgcccgccgctc 160



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 517 gcagtgcgtcagcttcattcgccttcaagccc 548
           ||||||||||||||||| |||||| |||||||
Sbjct: 533 gcagtgcgtcagcttca-tcgcctacaagccc 563

---

>dbj|AK068555.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156H12, full
           insert sequence
          Length = 899

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||||||||| ||||||||||||||||||||
Sbjct: 130 ccaccgccgggctccccgtcagccgccgctc 160



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 270 tccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||||||| |||| ||||||||||||||||
Sbjct: 315 tccaagtgggtgcctt-gcct-cgagttcagcaaggtt 350



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 45/50 (90%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           |||| |||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 201 atcaagtgcatgcaggtgtggccaattga-gggcatcaag-aagttcgag 248

---

>gb|AY103730.1| Zea mays PCO095823 mRNA sequence
          Length = 1172

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 50/55 (90%), Gaps = 2/55 (3%)
 Strand = Plus / Plus

                                                                  
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcc 167
           |||||||||| |||||||||||| || |||| ||| |||||||||||||||||||
Sbjct: 288 agcctcggcaacgtcagcaacggcgg-aagg-atccggtgcatgcaggtgtggcc 340



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 517 gcagtgcgtcagcttcattcgccttcaagccc 548
           ||||||||||||||||| |||||| |||||||
Sbjct: 653 gcagtgcgtcagcttca-tcgcctacaagccc 683

---

>gb|AF017363.1|AF017363 Oryza sativa ribulose 1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 918

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||||||||| ||||||||||||||||||||
Sbjct: 114 ccaccgccgggctccccgtcagccgccgctc 144



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 45/50 (90%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           |||| |||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 185 atcaagtgcatgcaggtgtggccaattga-gggcatcaag-aagttcgag 232

---

>dbj|D00170.1|MZEPCSSU Zea mays mRNA for ribulose 1,5-bisphosphate carboxylase small
           subunit, complete cds
          Length = 830

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 50/55 (90%), Gaps = 2/55 (3%)
 Strand = Plus / Plus

                                                                  
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggtgtggcc 167
           |||||||||| |||||||||||| || |||| ||| |||||||||||||||||||
Sbjct: 168 agcctcggcaacgtcagcaacggcgg-aagg-atccggtgcatgcaggtgtggcc 220



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 50/56 (89%), Gaps = 2/56 (3%)
 Strand = Plus / Plus

                                                                   
Query: 46  cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           |||||| ||||||||| ||||||| |||||||| |||||||||||  |||||||||
Sbjct: 107 cgctccgttccagggg-ctcaagt-ccaccgccagcctccccgtcgcccgccgctc 160



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 517 gcagtgcgtcagcttcattcgccttcaagccc 548
           ||||||||||||||||| |||||| |||||||
Sbjct: 533 gcagtgcgtcagcttca-tcgcctacaagccc 563

---

>dbj|AB020942.1| Secale cereale DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Sec-A
          Length = 591

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 96/112 (85%), Gaps = 8/112 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           ||||||||||| ||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 461 caggtgctcaatgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 515

                                                               
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
           || |||| ||| ||||||||| || || |||| |||||||||||||||||||
Sbjct: 516 gcgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttcat 564



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||| ||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcaacgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| || |||||||||||||||||
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctgcccgtcagccgccgctc 81



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 363 ccggtactggacaatgtgggaagctgcc 390
           ||||||||||||||||| ||||||||||
Sbjct: 409 ccggtactggacaatgt-ggaagctgcc 435

---

>dbj|D00644.1|RICRUBPC2 Oryza sativa (japonica cultivar-group) mRNA for the small subunit
           of ribulose-1,5-bisphosphate carboxylase, complete cds,
           clone pOSSS2106
          Length = 895

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||||||||| ||||||||||||||||||||
Sbjct: 128 ccaccgccgggctccccgtcagccgccgctc 158



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 270 tccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||||||| |||| ||||||||||||||||
Sbjct: 313 tccaagtgggtgcctt-gcct-cgagttcagcaaggtt 348

---

>dbj|AK121444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141B14, full
           insert sequence
          Length = 984

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 343 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 390

---

>dbj|AK119219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F11, full
           insert sequence
          Length = 828

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 189 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 236

---

>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 33/34 (97%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                             
Query: 514 ggtgcagtgcgtcagcttcattcgccttcaagcc 547
           |||||||||||||||||||| |||||||||||||
Sbjct: 4   ggtgcagtgcgtcagcttca-tcgccttcaagcc 36

---

>dbj|AK070556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062J10, full
           insert sequence
          Length = 2409

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 190 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 237

---

>dbj|AK061611.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F07, full
           insert sequence
          Length = 830

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 192 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 239

---

>gb|AF052305.1|AF052305 Oryza sativa ribulose 1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 835

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 178 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 225

---

>gb|AF039004.1|AF039004 Fritillaria agrestis clone TA9 rbcS pseudogene, partial sequence
          Length = 594

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/37 (94%), Gaps = 2/37 (5%)
 Strand = Plus / Plus

                                                
Query: 344 cctgggtactacgatgggcccggtactggacaatgtg 380
           ||||||||||||||||||  |||||||||||||||||
Sbjct: 487 cctgggtactacgatggg--cggtactggacaatgtg 521

---

>gb|AF017364.1|AF017364 Oryza sativa ribulose 1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 854

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 215 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 262

---

>gb|L22155.1|RICCPRBCLA Oryza sativum mitochondrial ribulose bisphosphate
           carboxylase/oxygenase (rbcS) mRNA, complete cds
          Length = 808

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 167 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 214

---

>dbj|AB020951.1| Aegilops bicornis DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Bic-B
          Length = 783

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 105/123 (85%), Gaps = 9/123 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 656 cacaggtgctcaatgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 710

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
           |||  |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||
Sbjct: 711 ccgtgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgcct 766

              
Query: 541 tca 543
           |||
Sbjct: 767 tca 769



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135

---

>dbj|D00643.1|RICRUBPC1 Oryza sativa (japonica cultivar-group) mRNA for the small subunit
           of ribulose-1,5-bisphosphate carboxylase, complete cds,
           clone pOSSS1139
          Length = 830

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand = Plus / Plus

                                                             
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggggcatcaagnaagttcgag 194
           ||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct: 187 atcaggtgcatgcaggtgtggccgattga-gggcatcaag-aagttcgag 234

---

>gb|DQ418485.1| Zingiber officinale ribulose-1,5-bisphosphate carboxylase/oxygenase
           small subunit mRNA, partial cds; chloroplast
          Length = 367

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 149 ggtgcatgcaggtgtggcccatcgagggg 177
           ||||||||||||||||||| |||||||||
Sbjct: 172 ggtgcatgcaggtgtggccgatcgagggg 200

---

>gb|AF039012.1|AF039012 Fritillaria agrestis clone TA27 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 595

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                               
Query: 344 cctgggtactacgatgggcccggtactggacaatgt 379
           ||||||||||||||||||  ||||||||||||||||
Sbjct: 487 cctgggtactacgatggg--cggtactggacaatgt 520

---

>gb|AF039010.1|AF039010 Fritillaria agrestis clone TA24 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 595

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 44/48 (91%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  || ||||||||||||| |||||||||||
Sbjct: 487 cctgggtactacgatggg--cgctactggacaatgt-ggaagctgccc 531

---

>gb|AF039009.1|AF039009 Fritillaria agrestis clone TA23 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 595

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 44/48 (91%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||| |  ||||||||||||||| |||||||||||
Sbjct: 487 cctgggtactacgatggac--ggtactggacaatgt-ggaagctgccc 531

---

>gb|AF039007.1|AF039007 Fritillaria agrestis clone TA10 rbcS pseudogene, partial sequence
          Length = 584

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 44/48 (91%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  || ||||||||||||| |||||||||||
Sbjct: 476 cctgggtactacgatggg--cgctactggacaatgt-ggaagctgccc 520

---

>gb|AF039006.1|AF039006 Fritillaria agrestis clone TA17 rbcS pseudogene, partial sequence
          Length = 584

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 44/48 (91%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  || ||||||||||||| |||||||||||
Sbjct: 476 cctgggtactacgatggg--cgctactggacaatgt-ggaagctgccc 520

---

>gb|AF039005.1|AF039005 Fritillaria agrestis clone TA13 rbcS pseudogene, partial sequence
          Length = 584

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 44/48 (91%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  || ||||||||||||| |||||||||||
Sbjct: 476 cctgggtactacgatggg--cgctactggacaatgt-ggaagctgccc 520

---

>dbj|AB020956.1| Triticum turgidum subsp. dicoccoides DNA for
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit, partial cds, clone Dic-B
          Length = 787

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 97/114 (85%), Gaps = 8/114 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||||| |||||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 655 cacaggtgctgaacgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 709

                                                                 
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
           |||  |||| ||| ||||||||| || || |||| |||||||||||||||||||
Sbjct: 710 ccgtgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttcat 760



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||| ||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcagcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135

---

>dbj|AB020948.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe3-B
          Length = 772

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 103/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           |||||||||| |||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 642 caggtgctcagcgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 696

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           |  |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 697 gtgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 752

            
Query: 543 a 543
           |
Sbjct: 753 a 753

---

>dbj|AB020947.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe2-B
          Length = 738

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 54/59 (91%), Gaps = 4/59 (6%)
 Strand = Plus / Plus

                                                                      
Query: 249 ggtcgactaccttgatccgcttccaagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||| |||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct: 488 ggtcgactacct-gatccgct-ccaagtgggtgccct-gcct-cgagttcagcaaggtt 542



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 421 cacaggtgctcaacgaggtggagg 444
           |||||||||||| |||||||||||
Sbjct: 640 cacaggtgctcagcgaggtggagg 663

---

>dbj|AB020939.1| Triticum timopheevii subsp. armeniacum DNA for
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit, partial cds, clone Ara-A
          Length = 604

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctccccgtcagccgccgctc 81



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 103/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           |||||||||| |||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 474 caggtgctcagcgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 528

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           |  |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 529 gtgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 584

            
Query: 543 a 543
           |
Sbjct: 585 a 585



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 133/155 (85%), Gaps = 13/155 (8%)
 Strand = Plus / Plus

                                                                       
Query: 153 catgcaggtgtggcccatcgaggggcatcaagnaagttcgagnacccctgtctttacttg 212
           ||||||||||||||| || || |||||||||| |||||||||   ||||||| |||||||
Sbjct: 233 catgcaggtgtggccgattga-gggcatcaag-aagttcgaga--ccctgtc-ttacttg 287

                                                                       
Query: 213 ccaccacttcagcacgggaggccctcctttaagcagggtcgactaccttgatccgcttcc 272
           ||||| | ||  ||| ||||||||||| | ||||| ||||||||||| |||||||| || 
Sbjct: 288 ccacc-cctctccac-ggaggccctcc-tgaagca-ggtcgactacc-tgatccgc-tca 341

                                              
Query: 273 aagtgggtgcctttgccttcgagttcagcaaggtt 307
           |||||||||||  |||| |||||||||||||||||
Sbjct: 342 aagtgggtgcc-ctgcc-tcgagttcagcaaggtt 374

---

>emb|Y00322.1|ZMRBCS Maize rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase
           small subunit (EC 4.1.1.39)
          Length = 1648

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 50/56 (89%), Gaps = 2/56 (3%)
 Strand = Plus / Plus

                                                                   
Query: 46  cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           |||||| ||||||||| ||||||| |||||||| |||||||||||  |||||||||
Sbjct: 532 cgctccgttccagggg-ctcaagt-ccaccgccagcctccccgtcgcccgccgctc 585



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||| |||||||||||| || |||| ||| |||||||||||||
Sbjct: 593 agcctcggcaacgtcagcaacggcgg-aagg-atccggtgcatgcaggt 639



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 517  gcagtgcgtcagcttcattcgccttcaagccc 548
            ||||||||||||||||| |||||| |||||||
Sbjct: 1118 gcagtgcgtcagcttca-tcgcctacaagccc 1148

---

>gb|AF031543.1|AF031543 Fritillaria agrestis ribulose 1,5 bisphosphate carboxylase small
           subunit type IV (rbcS4) mRNA, complete cds
          Length = 732

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 43/47 (91%), Gaps = 3/47 (6%)
 Strand = Plus / Plus

                                                          
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgcc 390
           ||||||||||||||||||  || ||||||||||||| ||||||||||
Sbjct: 362 cctgggtactacgatggg--cgctactggacaatgt-ggaagctgcc 405

---

>gb|AF024572.1|AF024572 Fritillaria agrestis ribulose 1,5 bisphosphate carboxylase, small
           subunit type I (rbcS1) mRNA, nuclear gene encoding
           chloroplast protein, complete cds
          Length = 713

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 43/47 (91%), Gaps = 3/47 (6%)
 Strand = Plus / Plus

                                                          
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgcc 390
           ||||||||||||||||||  || ||||||||||||| ||||||||||
Sbjct: 361 cctgggtactacgatggg--cgctactggacaatgt-ggaagctgcc 404

---

>dbj|AB020931.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe3-A3
          Length = 604

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 103/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           |||||||||| |||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 474 caggtgctcagcgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 528

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           |  |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 529 gtgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 584

            
Query: 543 a 543
           |
Sbjct: 585 a 585



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||| ||||| ||||||||||||||||||||
Sbjct: 51  ccacagccggtctccccgtcagccgccgctc 81

---

>dbj|AB020930.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe3-A2
          Length = 604

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 103/121 (85%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           |||||||||| |||||||||||   ||||||| |  ||||||||||| |||| |||||||
Sbjct: 474 caggtgctcagcgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgtcc 528

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           |  |||| ||| ||||||||| || || |||| |||||||||||||||||| ||||||||
Sbjct: 529 gtgtcat-cggcttcgacaacctg-cgccagg-tgcagtgcgtcagcttca-tcgccttc 584

            
Query: 543 a 543
           |
Sbjct: 585 a 585



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||| ||||| ||||||||||||||||||||
Sbjct: 51  ccacagccggtctccccgtcagccgccgctc 81

---

>dbj|AB020928.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe2-A
          Length = 604

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 96/113 (84%), Gaps = 8/113 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           ||||||||||||||||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 472 cacaggtgctcaacgaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 526

                                                                
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttca 533
           |||  |||| ||| || |||||| || || |||| ||||||||||||||||||
Sbjct: 527 ccgtgtcat-cggctttgacaacctg-cgccagg-tgcagtgcgtcagcttca 576



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||| ||||| ||||||||||||||||||||
Sbjct: 51  ccacagccggtctccccgtcagccgccgctc 81

---

>gb|AF202647.1|AF202647 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) gene, partial cds
          Length = 593

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 42/48 (87%), Gaps = 2/48 (4%)
 Strand = Plus / Plus

                                                           
Query: 114 gcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||| |||||||||||||||||||| |  | ||||| |||||||||||
Sbjct: 89  gccttggcagcgtcagcaacggtggaa--gaatcagatgcatgcaggt 134



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||| |||| ||||||||||   ||||||| |  ||||||||||| |||| |||||
Sbjct: 454 cacaggtgatcaaggaggtggagga--ggtcaagaa--ggagtaccctg-acgcctatgt 508

                                                                       
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgcct 540
            |||||||| ||| |||||||||||  || || | |||||||||||||||||| |||| |
Sbjct: 509 tcgcatcat-cggcttcgacaacatc-cgccaag-tgcagtgcgtcagcttca-tcgcat 564

                  
Query: 541 tcaagcc 547
           |||||||
Sbjct: 565 tcaagcc 571

---

>dbj|AB020929.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe3-A1
          Length = 604

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||| ||||| ||||||||||||||||||||
Sbjct: 51  ccacagccggtctccccgtcagccgccgctc 81



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                         
Query: 514 ggtgcagtgcgtcagcttcattcgccttca 543
           |||||||||||||||||||| |||||||||
Sbjct: 557 ggtgcagtgcgtcagcttca-tcgccttca 585

---

>dbj|AB020927.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Spe1-A1
          Length = 604

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||| ||||| ||||||||||||||||||||
Sbjct: 51  ccacagccggtctccccgtcagccgccgctc 81



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 102/121 (84%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           |||||||||| |||||||||||   ||||||| |  |||||||||| ||||| |||||||
Sbjct: 474 caggtgctcagcgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgtcc 528

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           |  ||| |||| ||||||||| | ||| || ||||||||||||||| |||| ||||||||
Sbjct: 529 gtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagtttca-tcgccttc 584

            
Query: 543 a 543
           |
Sbjct: 585 a 585

---

>dbj|AB020926.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds
          Length = 604

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ccaccgccggcctccccgtcagccgccgctc 101
           |||| ||||| ||||||||||||||||||||
Sbjct: 51  ccacagccggtctccccgtcagccgccgctc 81



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 102/121 (84%), Gaps = 9/121 (7%)
 Strand = Plus / Plus

                                                                       
Query: 423 caggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgtcc 482
           |||||||||| |||||||||||   ||||||| |  |||||||||| ||||| |||||||
Sbjct: 474 caggtgctcagcgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgtcc 528

                                                                       
Query: 483 gcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcattcgccttc 542
           |  ||| |||| ||||||||| | ||| || ||||||||||||||| |||| ||||||||
Sbjct: 529 gtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagtttca-tcgccttc 584

            
Query: 543 a 543
           |
Sbjct: 585 a 585

---

>dbj|AB020941.1| Triticum aestivum DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           CS-A
          Length = 605

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                         
Query: 514 ggtgcagtgcgtcagcttcattcgccttca 543
           |||||||||||||||||||| |||||||||
Sbjct: 558 ggtgcagtgcgtcagcttca-tcgccttca 586



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           ||||||||| |||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggccgcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| || |||||||||||||||||
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctgcccgtcagccgccgctc 81

---

>dbj|AB020940.1| Triticum turgidum subsp. dicoccoides DNA for
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit, partial cds, clone Dic-A
          Length = 605

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                         
Query: 514 ggtgcagtgcgtcagcttcattcgccttca 543
           |||||||||||||||||||| |||||||||
Sbjct: 558 ggtgcagtgcgtcagcttca-tcgccttca 586



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           ||||||||| |||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcggccgcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| || |||||||||||||||||
Sbjct: 35  ttccagggg-ctcaagt-ccacagccggtctgcccgtcagccgccgctc 81

---

>dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p10-1
          Length = 629

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                         
Query: 514 ggtgcagtgcgtcagcttcattcgccttca 543
           |||||||||||||||||||| |||||||||
Sbjct: 566 ggtgcagtgcgtcagcttca-tcgccttca 594



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 53  ttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
           ||||||||| ||||||| |||| ||||| || |||||||||||||||||
Sbjct: 46  ttccagggg-ctcaagt-ccacagccggtctgcccgtcagccgccgctc 92

---

>emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 in linkage group 11,
             complete sequence
          Length = 155980

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 485   atcattcggattcgacaacat 505
             |||||||||||||||||||||
Sbjct: 56963 atcattcggattcgacaacat 56983

---

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 269    ttccaagtgggtgcctttgccttcg 293
              ||||| |||||||||||||||||||
Sbjct: 267024 ttccaggtgggtgcctttgccttcg 267000

---

>emb|Y09214.1|ZMRUBSMSU Z.mays rubisco small subunit gene
          Length = 1274

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||||||| |||||||||||| || |||| ||| |||||||||||||
Sbjct: 298 agcctcggcaacgtcagcaacggcgg-aagg-atccggtgcatgcaggt 344



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 517 gcagtgcgtcagcttcattcgccttcaagccc 548
           ||||||||||||||||| |||||| |||||||
Sbjct: 781 gcagtgcgtcagcttca-tcgcctacaagccc 811

---

>emb|AJ428877.1|ROB428877 Rumex obtusifolius mRNA for putative ribulose 1,5 biphosphate
           carboxylase small subunit percursor (rbcs gene)
          Length = 686

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                            
Query: 515 gtgcagtgcgtcagcttcattcgccttcaagcc 547
           ||||||||||||||||||| |||||| ||||||
Sbjct: 550 gtgcagtgcgtcagcttca-tcgcctacaagcc 581

---

>gb|AF039014.1|AF039014 Fritillaria agrestis clone TA8 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 592

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 43/48 (89%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||| |||||||||||||  | ||||||||||||| |||||||||||
Sbjct: 484 cctggttactacgatgggc--gatactggacaatgt-ggaagctgccc 528

---

>gb|AF039011.1|AF039011 Fritillaria agrestis clone TA22 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 591

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 43/48 (89%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||| |||||||||||||  | ||||||||||||| |||||||||||
Sbjct: 483 cctggttactacgatgggc--gatactggacaatgt-ggaagctgccc 527

---

>gb|AF039008.1|AF039008 Fritillaria agrestis clone TA15 ribulose 1,5 bisphosphate
           carboxylase small subunit (rbcS) gene, partial cds
          Length = 592

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 43/48 (89%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||| |||||||||||||  | ||||||||||||| |||||||||||
Sbjct: 484 cctggttactacgatgggc--gatactggacaatgt-ggaagctgccc 528

---

>gb|AF031544.1|AF031544 Fritillaria agrestis ribulose 1,5 bisphosphate carboxylase small
           subunit type V (rbcS5) mRNA, complete cds
          Length = 728

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 43/48 (89%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  || |||||||| |||| |||||||||||
Sbjct: 389 cctgggtactacgatggg--cgctactggacgatgt-ggaagctgccc 433

---

>gb|AF024573.1|AF024573 Fritillaria agrestis ribulose 1,5 bisphosphate carboxylase, small
           subunit type II (rbcS2) mRNA, nuclear gene encoding
           chloroplast protein, complete cds
          Length = 784

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 43/48 (89%), Gaps = 3/48 (6%)
 Strand = Plus / Plus

                                                           
Query: 344 cctgggtactacgatgggcccggtactggacaatgtgggaagctgccc 391
           ||||||||||||||||||  || |||||||| |||| |||||||||||
Sbjct: 365 cctgggtactacgatggg--cgctactggacgatgt-ggaagctgccc 409

---

>dbj|AB020957.1| Triticum aestivum DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           CS-B1
          Length = 787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 96/114 (84%), Gaps = 8/114 (7%)
 Strand = Plus / Plus

                                                                       
Query: 421 cacaggtgctcaacgaggtggagggagggtcaagnaagggagtaccctggacgcgtatgt 480
           |||||||||| | |||||||||||   ||||||| |  |||||||||| ||||| |||||
Sbjct: 655 cacaggtgctgatcgaggtggagg--aggtcaagaa--ggagtaccct-gacgcctatgt 709

                                                                 
Query: 481 ccgcatcattcggattcgacaacatggcgtcagggtgcagtgcgtcagcttcat 534
           |||  ||| |||| ||||||||| | ||| || |||||||||||||||||||||
Sbjct: 710 ccgtgtca-tcggcttcgacaacct-gcgcca-ggtgcagtgcgtcagcttcat 760



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 44/49 (89%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                            
Query: 113 agcctcggcagcgtcagcaacggtggnaaggnatcaggtgcatgcaggt 161
           |||||| ||||||||||||| || || |||| |||||||||||||||||
Sbjct: 89  agcctcagcagcgtcagcaatggcgg-aagg-atcaggtgcatgcaggt 135

---

>gb|BC036690.1| Homo sapiens lemur tyrosine kinase 3, mRNA (cDNA clone
            IMAGE:5261248), partial cds
          Length = 2582

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   ccgccggcctccccgtcagccgcc 97
            ||||||||||||||| ||||||||
Sbjct: 1483 ccgccggcctccccgccagccgcc 1460

---

>gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, complete sequence
          Length = 147125

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    aggccctcctttaagcaggg 250
              ||||||||||||||||||||
Sbjct: 115537 aggccctcctttaagcaggg 115518

---

>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    gacaacatggcgtcagggtg 517
              ||||||||||||||||||||
Sbjct: 134745 gacaacatggcgtcagggtg 134726

---

>gb|AC009219.7| Drosophila melanogaster clone BACR32N16, complete sequence
          Length = 159007

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 527    agcttcattcgccttcaagcccac 550
              |||||||||||| |||||||||||
Sbjct: 155819 agcttcattcgctttcaagcccac 155796

---

>gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, complete sequence
          Length = 229632

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   caagtgggtgcctttgcctt 291
             ||||||||||||||||||||
Sbjct: 89032 caagtgggtgcctttgcctt 89013

---

>gb|AC125097.3| Mus musculus BAC clone RP24-188J11 from chromosome 3, complete
            sequence
          Length = 178057

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  caagtgggtgcctttgcctt 291
            ||||||||||||||||||||
Sbjct: 7755 caagtgggtgcctttgcctt 7774

---

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ccacttcagcacgggaggcc 235
              ||||||||||||||||||||
Sbjct: 499661 ccacttcagcacgggaggcc 499642

---

>ref|XM_936372.1| PREDICTED: Homo sapiens lemur tyrosine kinase 3 (LMTK3), mRNA
          Length = 4966

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   ccgccggcctccccgtcagccgcc 97
            ||||||||||||||| ||||||||
Sbjct: 3887 ccgccggcctccccgccagccgcc 3864

---

>ref|XM_055866.7| PREDICTED: Homo sapiens lemur tyrosine kinase 3 (LMTK3), mRNA
          Length = 4966

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   ccgccggcctccccgtcagccgcc 97
            ||||||||||||||| ||||||||
Sbjct: 3887 ccgccggcctccccgccagccgcc 3864

---

>gb|AC016157.2|AC016157 Drosophila melanogaster, chromosome 3R, region 86C-86D, BAC clone
             BACR48M22, complete sequence
          Length = 161549

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 527   agcttcattcgccttcaagcccac 550
             |||||||||||| |||||||||||
Sbjct: 51826 agcttcattcgctttcaagcccac 51803

---

>gb|AC008403.8| Homo sapiens chromosome 19 clone CTC-273B12, complete sequence
          Length = 190076

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    ccgccggcctccccgtcagccgcc 97
             ||||||||||||||| ||||||||
Sbjct: 77500 ccgccggcctccccgccagccgcc 77523

---

>dbj|AK070257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N11, full
           insert sequence
          Length = 845

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggg 176
           ||||| ||||||||||||||||| || |||||
Sbjct: 197 atcagatgcatgcaggtgtggccgattgaggg 228

---

>dbj|AK068266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149A10, full
           insert sequence
          Length = 1999

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 145 atcaggtgcatgcaggtgtggcccatcgaggg 176
           ||||| ||||||||||||||||| || |||||
Sbjct: 199 atcagatgcatgcaggtgtggccgattgaggg 230

---

>gb|M86717.1|SCFBCS1A Saccharum hybrid cultivar H32-8560 ribulose 1,5-bisphosphate
            carboxylase/oxygenase small subunit gene, complete cds
          Length = 2328

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 40/44 (90%), Gaps = 2/44 (4%)
 Strand = Plus / Plus

                                                        
Query: 47   gctcctttccaggggnctcaagtnccaccgccggcctccccgtc 90
            ||||| ||||||||| ||||||| |||||||| |||||||||||
Sbjct: 1211 gctccgttccagggg-ctcaagt-ccaccgccagcctccccgtc 1252

---

>gb|AE003689.2| Drosophila melanogaster chromosome 3R, section 27 of 118 of the
             complete sequence
          Length = 215899

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 527   agcttcattcgccttcaagcccac 550
             |||||||||||| |||||||||||
Sbjct: 62913 agcttcattcgctttcaagcccac 62890

---

>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 49/56 (87%), Gaps = 2/56 (3%)
 Strand = Plus / Plus

                                                                     
Query: 46    cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
             |||||| ||||||||| ||||||| ||||||||||| | ||||||  |||||||||
Sbjct: 82259 cgctcccttccagggg-ctcaagt-ccaccgccggcatgcccgtcgcccgccgctc 82312

---

>gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 197906

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ctagcctcggcagcgtcagc 130
             ||||||||||||||||||||
Sbjct: 70588 ctagcctcggcagcgtcagc 70607

---

>dbj|AB067470.1| Homo sapiens mRNA for KIAA1883 protein, partial cds
          Length = 4943

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   ccgccggcctccccgtcagccgcc 97
            ||||||||||||||| ||||||||
Sbjct: 3860 ccgccggcctccccgccagccgcc 3837

---

>dbj|AB067656.1| Oryza sativa (japonica cultivar-group) OsrbcS gene for small subunit
            of ribulose-1,5-bisphosphate carboxylase, promoter region
            and partial cds
          Length = 1815

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 49/56 (87%), Gaps = 2/56 (3%)
 Strand = Plus / Plus

                                                                    
Query: 46   cgctcctttccaggggnctcaagtnccaccgccggcctccccgtcagccgccgctc 101
            |||||| ||||||||| ||||||| ||||||||||| | ||||||  |||||||||
Sbjct: 1589 cgctcccttccagggg-ctcaagt-ccaccgccggcatgcccgtcgcccgccgctc 1642


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,279,884
Number of Sequences: 3902068
Number of extensions: 3279884
Number of successful extensions: 55975
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 55134
Number of HSP's gapped (non-prelim): 660
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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