ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baald07 |
|---|---|
| Clone Library Name | barley_pub |
>OTUD4_HUMAN (Q01804) OTU domain-containing protein 4 (HIV-1-induced protein| HIN-1) Length = 145 Score = 37.4 bits (85), Expect = 0.036 Identities = 23/79 (29%), Positives = 36/79 (45%) Frame = +1 Query: 106 RDHFSQFMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYN 285 R+ F F+ F Y KR + + +EI A + MY + IY ++ Q + N Sbjct: 11 REKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPN--VSPSQVTEN 68 Query: 286 TDVPPVRLSYHHGNHYNSV 342 V L + +GNHY+ V Sbjct: 69 NFPEKVLLCFSNGNHYDIV 87
>OTU_DROME (P10383) Protein ovarian tumor locus| Length = 853 Score = 36.6 bits (83), Expect = 0.061 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Frame = +1 Query: 73 CVFLFSLQERERDHFSQFMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYS-YS 249 CV +L+ R F + + F Y + K K YG E++A + +Y R + +Y Y+ Sbjct: 63 CVRFMTLKRRI---FEKEIPGDFDSYMQDMSKPKTYGTMTELRAMSCLYRRNVILYEPYN 119 Query: 250 TDPINIFQGSYNTDVPPVRLSYHHGNHYNSVVD 348 +F Y + R+ +++ NH++SV D Sbjct: 120 MGTSVVFNRRYAEN---FRVFFNNENHFDSVYD 149
>OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B| Length = 294 Score = 36.2 bits (82), Expect = 0.080 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 + E F YC +G +E++A + + PI + + PI I + N + V Sbjct: 210 YTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVIQAESLPIVIGEEYSNKPITLV 269 Query: 304 --RLSYHHGNHYNSV 342 R +Y G HYNSV Sbjct: 270 YMRHAYGLGEHYNSV 284
>OTU6B_HUMAN (Q8N6M0) OTU domain-containing protein 6B| Length = 293 Score = 35.0 bits (79), Expect = 0.18 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 + E F YC+ +G +E++A + + PI I + PI + G + P + Sbjct: 207 YTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIV--GEEYSKKPLI 264 Query: 304 ----RLSYHHGNHYNSV 342 R +Y G HYNSV Sbjct: 265 LVYMRHAYGLGEHYNSV 281
>OTU6B_BRARE (Q7ZV00) OTU domain-containing protein 6B| Length = 293 Score = 34.3 bits (77), Expect = 0.30 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 + E F YC +G +E++A +++ PI + + I I + D P + Sbjct: 207 YTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPCITIGE---EYDKPKI 263 Query: 304 RLSYHH-----GNHYNSV 342 L Y G HYNSV Sbjct: 264 TLIYMRHAYGLGEHYNSV 281
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 33.5 bits (75), Expect = 0.52 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +1 Query: 100 RERDHFSQFMTEG--FTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQ 273 ++R+ F F+ + F + K + N I AFA + + I+ + P+ + Sbjct: 105 KQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNA-PLWQIR 163 Query: 274 GSYNTDVPPVRLSYHHGNHYNSV 342 G+ + V + ++Y +G HY+SV Sbjct: 164 GTEKSSVRELHIAYRYGEHYDSV 186
>ISPE_UREPA (Q9PPN9) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 265 Score = 33.1 bits (74), Expect = 0.68 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = +1 Query: 229 IHIYSYSTDPINIFQGSYNTDVPPVRLSYHHGNHYNSVVDPRRLTVGAGLGFSSLRGVSL 408 +H Y+ T+ I ++ + + +R +YH NHY + +R+ +GAGLG S ++ Sbjct: 53 VHYYN-ETNEIYVYSRLVHKTLEWIRHTYHIKNHYRINIK-KRIPIGAGLGGGSSNAAAI 110 Query: 409 RK 414 K Sbjct: 111 MK 112
>OTU6B_MOUSE (Q8K2H2) OTU domain-containing protein 6B| Length = 294 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 + E F YC +G +E++A + + PI I PI + + + V Sbjct: 208 YTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAPPIIVGEEYPRNPLVLV 267 Query: 304 --RLSYHHGNHYNSV 342 R +Y G HYNSV Sbjct: 268 YMRHAYGLGEHYNSV 282
>OTU6B_CHICK (Q5ZIP6) OTU domain-containing protein 6B| Length = 302 Score = 32.7 bits (73), Expect = 0.88 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 + E F YC +G +E++A + + PI + D +I G + P + Sbjct: 216 YSKEEFEKYCDDIANTAAWGGQLELRALSHILQTPIEVVQM--DSPSIIVGEEYSGKPII 273 Query: 304 ----RLSYHHGNHYNSV 342 R +Y G HYNSV Sbjct: 274 LVYMRHAYGLGEHYNSV 290
>OTU6B_XENTR (Q5M8L0) OTU domain-containing protein 6B| Length = 294 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 + E F YC +G +E++A + + I + + PI I + + + V Sbjct: 210 YTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAESSPIVIGEEYSSKAITLV 269 Query: 304 --RLSYHHGNHYNSV 342 R +Y G HYNSV Sbjct: 270 YMRHAYGLGEHYNSV 284
>ABRU_DROME (Q24174) Protein abrupt (Protein clueless)| Length = 904 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = -1 Query: 498 NTNSSQNHPSQNG*WGNNNHQESCPTRKFPKAYPSKGAKSQACPNCQPTRINN 340 N NSS N+ N NNN+ ES K +Y S S AC N + NN Sbjct: 212 NNNSSSNNSLSNNNNNNNNNAESSNHNKI-SSYLSPNQTSAACNNSSNSNSNN 263
>OTU6A_HUMAN (Q7L8S5) OTU domain-containing protein 6A| Length = 288 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +1 Query: 124 FMTEGFTPYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTDPINIFQGSYNTDVPPV 303 F + F YC + +G +E++A + + PI + + + I + + V Sbjct: 198 FGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQADSPTLIIGEEYVKKPIILV 257 Query: 304 RLSYHH--GNHYNSV 342 L Y + G HYNSV Sbjct: 258 YLRYAYSLGEHYNSV 272
>G3P_METMA (Q8PTD3) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)| (GAPDH) (NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase) Length = 335 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 247 STDPINIFQGSYNTDVP-PVRLSYHHGNHYNSVVDPRRLTVGA 372 +TDP +I +G N VP P++L HHG SV+ +T A Sbjct: 170 ATDPNDIKKGPINAIVPDPIKLPSHHGPDIKSVLPHINITTAA 212
>PLXC1_MOUSE (Q9QZC2) Plexin-C1 precursor (Receptor for viral-encoded semaphorin| protein) Length = 1574 Score = 31.6 bits (70), Expect = 2.0 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = -1 Query: 396 SKGAKSQACPNCQPTRINN*IIMVTVMVT*PNRRNICVITSLKNVNGICTVRIYVNWTIV 217 S G K CP Q R VT++ + R + CV+ + +C R +NWT Sbjct: 500 SSGPKK--CPKIQILRSLRERTTVTIVGSISARHSECVVKNADTGKLLCQGRSQLNWTCA 557 Query: 216 -HLSKCLDLNVIAIYLIFSFP 157 ++ NV+ + FSFP Sbjct: 558 CNIPSRPSYNVLVVNATFSFP 578
>YHB3_YEAST (P38747) Hypothetical 36.1 kDa protein in YLF2-PRPS4 intergenic| region Length = 307 Score = 31.2 bits (69), Expect = 2.6 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Frame = +1 Query: 97 ERERDHFSQFMTEGFT-------PYCKRKRKDKVYGNNIEIQAFAEMYNRPIHIYSYSTD 255 + RD F ++ + T Y K +G IEI A + +++ PI I S Sbjct: 214 QEHRDDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM-SGR 272 Query: 256 PINIF-QGSYNTDVPPV--RLSYHHGNHYNSVVD 348 PI ++ + N ++ V + SY G HYNS+ D Sbjct: 273 PIQVYNECGKNPELKLVYYKHSYALGEHYNSLHD 306
>SGPL1_MOUSE (Q8R0X7) Sphingosine-1-phosphate lyase 1 (EC 4.1.2.27) (SP-lyase)| (mSPL) (Sphingosine-1-phosphate aldolase) Length = 568 Score = 31.2 bits (69), Expect = 2.6 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 279 TSLKN-VNGICTVRIYVNWTIVHLSKCLDLNVIAIYLIFSFPFTVWCKAFRHELRKMI-P 106 T KN VNG CT Y W ++ S L ++ +Y + P ++W + F+ +L K+I Sbjct: 24 TKAKNYVNGYCTK--YEPWQLIAWSVLCTLLIVWVYELIFQPESLWSR-FKKKLFKLIRK 80 Query: 105 LPFLE*KKKNTMS 67 +PF+ K + +S Sbjct: 81 MPFIGRKIEQQVS 93
>G3P1_METBF (Q46AH5) Glyceraldehyde-3-phosphate dehydrogenase 1 (EC 1.2.1.59)| (GAPDH 1) (NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase 1) Length = 338 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 247 STDPINIFQGSYNTDVP-PVRLSYHHGNHYNSVVDPRRLTVGA 372 +TDP ++ +G N VP P++L HHG SV+ +T A Sbjct: 170 ATDPNDVKKGPINAIVPDPIKLPSHHGPDVKSVLPQINITSAA 212
>GPMA_MYCPA (Q73SU2) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +1 Query: 244 YSTDPINIFQGSYNTDVPPVRLSYHHGNHYNSVVDPRRLTVGAGLGFSSLRGVSLRKLP 420 Y + ++ SY+T PP+ G+ Y+ DPR +G G L V +R LP Sbjct: 108 YGEEQFMAWRRSYDTPPPPIE----RGSTYSQDADPRYADIGGGPLTECLADVVVRFLP 162
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +1 Query: 256 PINIFQGSYNTDVPPVRLSYHHGNHYNSVVDPRRLTVGAGL 378 P+++F GS T++PP++L + +S+ L VG+ L Sbjct: 148 PLSLFDGSPTTELPPIQLDRKRSSSDHSLPSIASLNVGSSL 188
>SGPL1_RAT (Q8CHN6) Sphingosine-1-phosphate lyase 1 (EC 4.1.2.27) (SP-lyase)| (SPL) (Sphingosine-1-phosphate aldolase) Length = 568 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = -1 Query: 279 TSLKN-VNGICTVRIYVNWTIVHLSKCLDLNVIAIYLIFSFPFTVWCKAFRHELRKMI-P 106 T KN VNG CT Y W ++ S L V+ +Y + P ++W + F+++L ++I Sbjct: 24 TKAKNYVNGYCTK--YEPWQLIAGSVLCTLLVVWVYELIFQPESLWSR-FKNKLFRLIRK 80 Query: 105 LPFL 94 +PF+ Sbjct: 81 MPFI 84
>GPMA_MYCTU (P0A5R6) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 29.6 bits (65), Expect = 7.5 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = +1 Query: 244 YSTDPINIFQGSYNTDVPPVRLSYHHGNHYNSVVDPRRLTVGAGLGFSSLRGVSLRKLPC 423 Y + ++ SY+T PP+ G+ ++ DPR +G G L V R LP Sbjct: 108 YGEEQFMAWRRSYDTPPPPIE----RGSQFSQDADPRYADIGGGPLTECLADVVARFLPY 163 Query: 424 RA*FLVVIISPLTI 465 F VI+ L + Sbjct: 164 ---FTDVIVGDLRV 174
>GPMA_MYCBO (P0A5R7) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 29.6 bits (65), Expect = 7.5 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = +1 Query: 244 YSTDPINIFQGSYNTDVPPVRLSYHHGNHYNSVVDPRRLTVGAGLGFSSLRGVSLRKLPC 423 Y + ++ SY+T PP+ G+ ++ DPR +G G L V R LP Sbjct: 108 YGEEQFMAWRRSYDTPPPPIE----RGSQFSQDADPRYADIGGGPLTECLADVVARFLPY 163 Query: 424 RA*FLVVIISPLTI 465 F VI+ L + Sbjct: 164 ---FTDVIVGDLRV 174
>EZH2_MOUSE (Q61188) Enhancer of zeste homolog 2 (ENX-1)| Length = 746 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Frame = -1 Query: 543 VNTIGLYTQGSESLFNTNSSQNHPSQNG*WGNNNHQESCPTRKFP---------KAYPSK 391 VN +G Y + + + Q N + +E+CP RKFP +P K Sbjct: 175 VNALGQYNDDDDDDDGDDPDEREEKQKDLEDNRDDKETCPPRKFPADKIFEAISSMFPDK 234 Query: 390 GAKSQ 376 G + Sbjct: 235 GTAEE 239 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,331,355 Number of Sequences: 219361 Number of extensions: 1894408 Number of successful extensions: 4547 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4528 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
