Clone Name | baald01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete sequence Length = 157397 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Minus Query: 251 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 155189 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 155130 Query: 311 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 155129 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 155073 Query: 371 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 155072 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 155016 Query: 431 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 155015 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 154956 Query: 491 atagcgttaacttggacatgat 512 || || || || |||||||||| Sbjct: 154955 atggcatttacgtggacatgat 154934 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100 ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct: 155408 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 155349 Query: 101 tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160 |||||| | | |||||||||||| |||||||||||||| |||||| ||| | | | | Sbjct: 155348 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 155289 Query: 161 aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220 ||| |||||||||| | ||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 155288 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 155229 Query: 221 a 221 | Sbjct: 155228 a 155228
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 251 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 108204 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 108263 Query: 311 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 108264 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 108320 Query: 371 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 108321 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 108377 Query: 431 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 108378 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 108437 Query: 491 atagcgttaacttggacatgat 512 || || || || |||||||||| Sbjct: 108438 atggcatttacgtggacatgat 108459 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100 ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct: 107985 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 108044 Query: 101 tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160 |||||| | | |||||||||||| |||||||||||||| |||||| ||| | | | | Sbjct: 108045 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 108104 Query: 161 aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220 ||| |||||||||| | ||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 108105 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 108164 Query: 221 a 221 | Sbjct: 108165 a 108165
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 251 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 22512957 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 22513016 Query: 311 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 22513017 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 22513073 Query: 371 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 22513074 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 22513130 Query: 431 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 22513131 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 22513190 Query: 491 atagcgttaacttggacatgat 512 || || || || |||||||||| Sbjct: 22513191 atggcatttacgtggacatgat 22513212 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100 ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct: 22512738 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 22512797 Query: 101 tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160 |||||| | | |||||||||||| |||||||||||||| |||||| ||| | | | | Sbjct: 22512798 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 22512857 Query: 161 aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220 ||| |||||||||| | ||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 22512858 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 22512917 Query: 221 a 221 | Sbjct: 22512918 a 22512918 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcggcc 415 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 31184508 cggcgagaagcagagctacacggtgagcttcgcggcggcc 31184469 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93 ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||||| Sbjct: 31184825 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 31184773
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 251 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 22505986 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 22506045 Query: 311 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 22506046 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 22506102 Query: 371 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 22506103 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 22506159 Query: 431 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 22506160 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 22506219 Query: 491 atagcgttaacttggacatgat 512 || || || || |||||||||| Sbjct: 22506220 atggcatttacgtggacatgat 22506241 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100 ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct: 22505767 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 22505826 Query: 101 tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160 |||||| | | |||||||||||| |||||||||||||| |||||| ||| | | | | Sbjct: 22505827 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 22505886 Query: 161 aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220 ||| |||||||||| | ||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 22505887 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 22505946 Query: 221 a 221 | Sbjct: 22505947 a 22505947 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcggcc 415 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 31275031 cggcgagaagcagagctacacggtgagcttcgcggcggcc 31274992 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93 ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||||| Sbjct: 31275348 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 31275296
>dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B09, full insert sequence Length = 2517 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 251 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 2090 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 2149 Query: 311 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 2150 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 2206 Query: 371 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2207 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 2263 Query: 431 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 2264 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 2323 Query: 491 atagcgttaacttggacatgat 512 || || || || |||||||||| Sbjct: 2324 atggcatttacgtggacatgat 2345 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100 ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct: 1871 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 1930 Query: 101 tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160 |||||| | | |||||||||||| |||||||||||||| |||||| ||| | | | | Sbjct: 1931 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 1990 Query: 161 aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220 ||| |||||||||| | ||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 1991 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 2050 Query: 221 a 221 | Sbjct: 2051 a 2051
>gb|AY106470.1| Zea mays PCO136952 mRNA sequence Length = 741 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcgg 413 |||||||||| ||||||||||||||||||||||||||| Sbjct: 341 cggcgagaagcagagctacacggtgagcttcacggcgg 378 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 182 ctcaactacccgtccttttccgtggc 207 ||||||||||||||||| |||||||| Sbjct: 165 ctcaactacccgtccttctccgtggc 190
>ref|XM_469861.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2568 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcggcc 415 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 2163 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2202 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93 ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||||| Sbjct: 1846 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 1898
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcggcc 415 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 105149 cggcgagaagcagagctacacggtgagcttcgcggcggcc 105110 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93 ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||||| Sbjct: 105466 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 105414
>dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123P12, full insert sequence Length = 2813 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcggcc 415 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 2411 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2450 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93 ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||||| Sbjct: 2094 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 2146
>dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055P14, full insert sequence Length = 2667 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 376 cggcgagaagaagagctacacggtgagcttcacggcggcc 415 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 2216 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2255 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93 ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||||| Sbjct: 1899 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 1951
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 89 tgcgcgctcaagtacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacggg 148 ||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||| Sbjct: 84302 tgcgcgctcaactacacatccaccatgatcgccgccgtggcgaggagcaagagctacggc 84243 Query: 149 tgcgccgcgaacaagacctactccgtctccaacctcaactacccgtccttttccgtggc 207 ||| | | || |||| |||| ||| | | ||||||||||||||||||||| ||||||| Sbjct: 84242 tgctcggagagcaaggcctagtccatgtacaacctcaactacccgtccttcgccgtggc 84184
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 89 tgcgcgctcaagtacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacggg 148 ||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||| Sbjct: 6959379 tgcgcgctcaactacacatccaccatgatcgccgccgtggcgaggagcaagagctacggc 6959320 Query: 149 tgcgccgcgaacaagacctactccgtctccaacctcaactacccgtccttttccgtggc 207 ||| | | || |||| |||| ||| | | ||||||||||||||||||||| ||||||| Sbjct: 6959319 tgctcggagagcaaggcctagtccatgtacaacctcaactacccgtccttcgccgtggc 6959261 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacg 77 ||||| || ||||||||||||| | |||||||||||| Sbjct: 17578275 ccgggcctggtctacgacctcgccgccggcgactacg 17578311
>ref|XM_476161.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 978 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 112 catgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctactc 171 |||||||||||| ||||| |||||||| |||||| ||| | | || |||| |||| || Sbjct: 700 catgatcgccgccgtggcgaggagcaagagctacggctgctcggagagcaaggcctagtc 641 Query: 172 cgtctccaacctcaactacccgtccttttccgtggc 207 | | | ||||||||||||||||||||| ||||||| Sbjct: 640 catgtacaacctcaactacccgtccttcgccgtggc 605
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctc 97 |||||||||||||||||| |||| || ||||||| | ||| |||||||||||||| Sbjct: 33001628 ccggggctcgtctacgacgccggcgtcgacgactacctcgacgtcctgtgcgcgctc 33001684 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctcggcaccggcgactac 76 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 5530642 ccgggcctcgtctacgacctcgccgccgtcgactac 5530607 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcgctggcgcggagcaagg 140 |||||||||||||||||||| Sbjct: 4653347 cgcgctggcgcggagcaagg 4653366
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctc 97 |||||||||||||||||| |||| || ||||||| | ||| |||||||||||||| Sbjct: 47568 ccggggctcgtctacgacgccggcgtcgacgactacctcgacgtcctgtgcgcgctc 47624
>ref|XM_474683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2277 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctc 61 ||||||||||||||||||||| Sbjct: 1816 ccggggctcgtctacgacctc 1836
>ref|XM_475134.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2355 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacg 77 ||||| || ||||||||||||| | |||||||||||| Sbjct: 1849 ccgggcctggtctacgacctcgccgccggcgactacg 1885
>gb|BT018407.1| Zea mays clone EL01N0326A09.d mRNA sequence Length = 1456 Score = 42.1 bits (21), Expect = 2.0 Identities = 65/77 (84%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 3 ggcgccgggcacgtggnacccgacgcgcgcggtggnagccggggctcgtctacgacctcg 62 |||||||||||||||| |||||| |||||| ||| | |||||||| || |||||| ||| Sbjct: 608 ggcgccgggcacgtgg-acccgatgcgcgccatgg-acccggggctggtgtacgacatcg 665 Query: 63 gcaccggcgactacgtg 79 || | ||||||||||| Sbjct: 666 gcccaagcgactacgtg 682
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacg 77 ||||| || ||||||||||||| | |||||||||||| Sbjct: 108080 ccgggcctggtctacgacctcgccgccggcgactacg 108116
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctc 61 ||||||||||||||||||||| Sbjct: 5562093 ccggggctcgtctacgacctc 5562073
>dbj|AK064686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D11, full insert sequence Length = 1125 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactacg 77 ||||| || ||||||||||||| | |||||||||||| Sbjct: 518 ccgggcctggtctacgacctcgccgccggcgactacg 554
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctc 61 ||||||||||||||||||||| Sbjct: 19300 ccggggctcgtctacgacctc 19280
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctc 61 ||||||||||||||||||||| Sbjct: 116723 ccggggctcgtctacgacctc 116703
>emb|Z75743.1|HSLUCA9 Human DNA sequence from clone XXcos-9 on chromosome 3, complete sequence Length = 24055 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 436 cgccgggttcggccggctggtgtgg 460 |||||||| |||||||||||||||| Sbjct: 3313 cgccgggtgcggccggctggtgtgg 3289
>gb|AY790329.1| Pseudomonas sp. KBOS 17 PHA synthase I (phaC1), PHA depolymerase (phaZ), and PHA synthase II (phaC2) genes, complete cds Length = 4621 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cggcgatcggcgagaagaag 388 |||||||||||||||||||| Sbjct: 1045 cggcgatcggcgagaagaag 1064
>ref|XM_464493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2610 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactac 76 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 1986 ccgggcctcgtctacgacctcgccgccgtcgactac 2021
>ref|XM_464494.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactac 76 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 782 ccgggcctcgtctacgacctcgccgccgtcgactac 817
>ref|XM_464352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1698 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcgctggcgcggagcaagg 140 |||||||||||||||||||| Sbjct: 1065 cgcgctggcgcggagcaagg 1084
>ref|NM_196673.1| Oryza sativa (japonica cultivar-group) putative soluble starch synthase II-1 (OSJNBb0016G17.2), mRNA Length = 3219 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gtcgcagccgtcgggcaccg 437 |||||||||||||||||||| Sbjct: 2970 gtcgcagccgtcgggcaccg 2951
>ref|XM_953219.1| Neurospora crassa OR74A hypothetical protein (NCU09913.1) partial mRNA Length = 1443 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cgacctcggcaccggcgact 74 |||||||||||||||||||| Sbjct: 762 cgacctcggcaccggcgact 781
>ref|XM_329660.1| Neurospora crassa OR74A hypothetical protein (NCU09913.1) partial mRNA Length = 1443 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cgacctcggcaccggcgact 74 |||||||||||||||||||| Sbjct: 762 cgacctcggcaccggcgact 781
>gb|AF423758.1| HIV-1 isolate X475 from Spain, complete genome Length = 8945 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 aactgctgacaccgctgctg 569 |||||||||||||||||||| Sbjct: 8838 aactgctgacaccgctgctg 8857
>gb|AE005803.1| Caulobacter crescentus CB15 section 129 of 359 of the complete genome Length = 10483 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 cctcggtgtccatgtccggggtga 335 ||||||||| |||||||||||||| Sbjct: 1123 cctcggtgttcatgtccggggtga 1100
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gtcgcagccgtcgggcaccg 437 |||||||||||||||||||| Sbjct: 22624 gtcgcagccgtcgggcaccg 22605
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gtcgcagccgtcgggcaccg 437 |||||||||||||||||||| Sbjct: 15168925 gtcgcagccgtcgggcaccg 15168906
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gtcgcagccgtcgggcaccg 437 |||||||||||||||||||| Sbjct: 77538 gtcgcagccgtcgggcaccg 77519
>dbj|AB220636.1| Uncultured bacterium phaC gene for PHA synthase, partial cds, clone:N-33 Length = 479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cggcgatcggcgagaagaag 388 |||||||||||||||||||| Sbjct: 257 cggcgatcggcgagaagaag 276
>dbj|AB220618.1| Uncultured bacterium phaC gene for PHA synthase, partial cds, clone:N-14 Length = 479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cggcgatcggcgagaagaag 388 |||||||||||||||||||| Sbjct: 257 cggcgatcggcgagaagaag 276
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 41 ccggggctcgtctacgacctcggcaccggcgactac 76 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 75377 ccgggcctcgtctacgacctcgccgccgtcgactac 75342
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcgctggcgcggagcaagg 140 |||||||||||||||||||| Sbjct: 25419 cgcgctggcgcggagcaagg 25438
>dbj|AK120287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B17, full insert sequence Length = 2614 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactac 76 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 1990 ccgggcctcgtctacgacctcgccgccgtcgactac 2025
>dbj|AK106394.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F05, full insert sequence Length = 1408 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcgactac 76 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 782 ccgggcctcgtctacgacctcgccgccgtcgactac 817
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ctccggcgccaccacggtga 257 |||||||||||||||||||| Sbjct: 1038314 ctccggcgccaccacggtga 1038295
>dbj|AK062774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A06, full insert sequence Length = 849 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gtcgcagccgtcgggcaccg 437 |||||||||||||||||||| Sbjct: 348 gtcgcagccgtcgggcaccg 329
>gb|AY108210.1| Zea mays PCO096605 mRNA sequence Length = 1795 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 41 ccggggctcgtctacgacctcggcaccggcga 72 |||||||| || |||||||||||| ||||||| Sbjct: 999 ccggggctggtgtacgacctcggcgccggcga 1030
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cgtcgggcaccgccgggttc 445 |||||||||||||||||||| Sbjct: 2520997 cgtcgggcaccgccgggttc 2520978
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gtcgcagccgtcgggcaccg 437 |||||||||||||||||||| Sbjct: 15177166 gtcgcagccgtcgggcaccg 15177147 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,527,093 Number of Sequences: 3902068 Number of extensions: 2527093 Number of successful extensions: 54969 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54228 Number of HSP's gapped (non-prelim): 732 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)