ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baald01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 218 2e-53
2gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom... 218 2e-53
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 218 2e-53
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
5dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
6gb|AY106470.1| Zea mays PCO136952 mRNA sequence 68 3e-08
7ref|XM_469861.1| Oryza sativa (japonica cultivar-group), mRNA 64 5e-07
8gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 64 5e-07
9dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
10dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
11gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13ref|XM_476161.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
15dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
16ref|XM_474683.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
17ref|XM_475134.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
18gb|BT018407.1| Zea mays clone EL01N0326A09.d mRNA sequence 42 2.0
19gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21dbj|AK064686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
22emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 42 2.0
23emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 42 2.0
24emb|Z75743.1|HSLUCA9 Human DNA sequence from clone XXcos-9 on ch... 42 2.0
25gb|AY790329.1| Pseudomonas sp. KBOS 17 PHA synthase I (phaC1), P... 40 7.8
26ref|XM_464493.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
27ref|XM_464494.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
28ref|XM_464352.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
29ref|NM_196673.1| Oryza sativa (japonica cultivar-group) putative... 40 7.8
30ref|XM_953219.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.8
31ref|XM_329660.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.8
32gb|AF423758.1| HIV-1 isolate X475 from Spain, complete genome 40 7.8
33gb|AE005803.1| Caulobacter crescentus CB15 section 129 of 359 of... 40 7.8
34gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
36gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) ch... 40 7.8
37dbj|AB220636.1| Uncultured bacterium phaC gene for PHA synthase,... 40 7.8
38dbj|AB220618.1| Uncultured bacterium phaC gene for PHA synthase,... 40 7.8
39dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
40dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
41dbj|AK120287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
42dbj|AK106394.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
43emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 7.8
44dbj|AK062774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
45gb|AY108210.1| Zea mays PCO096605 mRNA sequence 40 7.8
46gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 7.8
47gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8

>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
              sequence
          Length = 157397

 Score =  218 bits (110), Expect = 2e-53
 Identities = 225/262 (85%), Gaps = 6/262 (2%)
 Strand = Plus / Minus

                                                                          
Query: 251    acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310
              ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  |
Sbjct: 155189 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 155130

                                                                          
Query: 311    gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370
              ||  | |   ||||| | || ||| |||| | |||| ||||||| ||||||| |||||||
Sbjct: 155129 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 155073

                                                                          
Query: 371    gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430
               ||  |||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 155072 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 155016

                                                                          
Query: 431    ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490
              ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 155015 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 154956

                                    
Query: 491    atagcgttaacttggacatgat 512
              || || || || ||||||||||
Sbjct: 154955 atggcatttacgtggacatgat 154934



 Score =  161 bits (81), Expect = 3e-36
 Identities = 156/181 (86%)
 Strand = Plus / Minus

                                                                          
Query: 41     ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100
              ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| 
Sbjct: 155408 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 155349

                                                                          
Query: 101    tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160
              |||||| | | ||||||||||||  ||||||||||||||  |||||| ||| | | |  |
Sbjct: 155348 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 155289

                                                                          
Query: 161    aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220
              ||| |||||||||| | |||||||||||||||||||||  ||||||| ||||| ||||||
Sbjct: 155288 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 155229

               
Query: 221    a 221
              |
Sbjct: 155228 a 155228



to top

>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
              sequence
          Length = 145590

 Score =  218 bits (110), Expect = 2e-53
 Identities = 225/262 (85%), Gaps = 6/262 (2%)
 Strand = Plus / Plus

                                                                          
Query: 251    acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310
              ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  |
Sbjct: 108204 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 108263

                                                                          
Query: 311    gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370
              ||  | |   ||||| | || ||| |||| | |||| ||||||| ||||||| |||||||
Sbjct: 108264 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 108320

                                                                          
Query: 371    gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430
               ||  |||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 108321 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 108377

                                                                          
Query: 431    ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490
              ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 108378 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 108437

                                    
Query: 491    atagcgttaacttggacatgat 512
              || || || || ||||||||||
Sbjct: 108438 atggcatttacgtggacatgat 108459



 Score =  161 bits (81), Expect = 3e-36
 Identities = 156/181 (86%)
 Strand = Plus / Plus

                                                                          
Query: 41     ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100
              ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| 
Sbjct: 107985 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 108044

                                                                          
Query: 101    tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160
              |||||| | | ||||||||||||  ||||||||||||||  |||||| ||| | | |  |
Sbjct: 108045 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 108104

                                                                          
Query: 161    aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220
              ||| |||||||||| | |||||||||||||||||||||  ||||||| ||||| ||||||
Sbjct: 108105 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 108164

               
Query: 221    a 221
              |
Sbjct: 108165 a 108165



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  218 bits (110), Expect = 2e-53
 Identities = 225/262 (85%), Gaps = 6/262 (2%)
 Strand = Plus / Plus

                                                                            
Query: 251      acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310
                ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  |
Sbjct: 22512957 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 22513016

                                                                            
Query: 311      gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370
                ||  | |   ||||| | || ||| |||| | |||| ||||||| ||||||| |||||||
Sbjct: 22513017 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 22513073

                                                                            
Query: 371      gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430
                 ||  |||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 22513074 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 22513130

                                                                            
Query: 431      ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490
                ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 22513131 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 22513190

                                      
Query: 491      atagcgttaacttggacatgat 512
                || || || || ||||||||||
Sbjct: 22513191 atggcatttacgtggacatgat 22513212



 Score =  161 bits (81), Expect = 3e-36
 Identities = 156/181 (86%)
 Strand = Plus / Plus

                                                                            
Query: 41       ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100
                ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| 
Sbjct: 22512738 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 22512797

                                                                            
Query: 101      tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160
                |||||| | | ||||||||||||  ||||||||||||||  |||||| ||| | | |  |
Sbjct: 22512798 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 22512857

                                                                            
Query: 161      aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220
                ||| |||||||||| | |||||||||||||||||||||  ||||||| ||||| ||||||
Sbjct: 22512858 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 22512917

                 
Query: 221      a 221
                |
Sbjct: 22512918 a 22512918



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 376      cggcgagaagaagagctacacggtgagcttcacggcggcc 415
                |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 31184508 cggcgagaagcagagctacacggtgagcttcgcggcggcc 31184469



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 41       ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93
                ||||| |||||||||||| ||| | ||| ||||||||| |||||||| |||||
Sbjct: 31184825 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 31184773



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  218 bits (110), Expect = 2e-53
 Identities = 225/262 (85%), Gaps = 6/262 (2%)
 Strand = Plus / Plus

                                                                            
Query: 251      acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310
                ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  |
Sbjct: 22505986 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 22506045

                                                                            
Query: 311      gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370
                ||  | |   ||||| | || ||| |||| | |||| ||||||| ||||||| |||||||
Sbjct: 22506046 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 22506102

                                                                            
Query: 371      gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430
                 ||  |||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 22506103 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 22506159

                                                                            
Query: 431      ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490
                ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 22506160 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 22506219

                                      
Query: 491      atagcgttaacttggacatgat 512
                || || || || ||||||||||
Sbjct: 22506220 atggcatttacgtggacatgat 22506241



 Score =  161 bits (81), Expect = 3e-36
 Identities = 156/181 (86%)
 Strand = Plus / Plus

                                                                            
Query: 41       ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100
                ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| 
Sbjct: 22505767 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 22505826

                                                                            
Query: 101      tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160
                |||||| | | ||||||||||||  ||||||||||||||  |||||| ||| | | |  |
Sbjct: 22505827 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 22505886

                                                                            
Query: 161      aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220
                ||| |||||||||| | |||||||||||||||||||||  ||||||| ||||| ||||||
Sbjct: 22505887 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 22505946

                 
Query: 221      a 221
                |
Sbjct: 22505947 a 22505947



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 376      cggcgagaagaagagctacacggtgagcttcacggcggcc 415
                |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 31275031 cggcgagaagcagagctacacggtgagcttcgcggcggcc 31274992



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 41       ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93
                ||||| |||||||||||| ||| | ||| ||||||||| |||||||| |||||
Sbjct: 31275348 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 31275296



to top

>dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B09, full
            insert sequence
          Length = 2517

 Score =  218 bits (110), Expect = 2e-53
 Identities = 225/262 (85%), Gaps = 6/262 (2%)
 Strand = Plus / Plus

                                                                        
Query: 251  acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 310
            ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  |
Sbjct: 2090 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 2149

                                                                        
Query: 311  gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 370
            ||  | |   ||||| | || ||| |||| | |||| ||||||| ||||||| |||||||
Sbjct: 2150 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 2206

                                                                        
Query: 371  gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 430
             ||  |||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 2207 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 2263

                                                                        
Query: 431  ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 490
            ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 2264 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 2323

                                  
Query: 491  atagcgttaacttggacatgat 512
            || || || || ||||||||||
Sbjct: 2324 atggcatttacgtggacatgat 2345



 Score =  161 bits (81), Expect = 3e-36
 Identities = 156/181 (86%)
 Strand = Plus / Plus

                                                                        
Query: 41   ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaag 100
            ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| 
Sbjct: 1871 ccgggactcgtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaac 1930

                                                                        
Query: 101  tacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaac 160
            |||||| | | ||||||||||||  ||||||||||||||  |||||| ||| | | |  |
Sbjct: 1931 tacacgtccaccatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggc 1990

                                                                        
Query: 161  aagacctactccgtctccaacctcaactacccgtccttttccgtggcatactccacggcg 220
            ||| |||||||||| | |||||||||||||||||||||  ||||||| ||||| ||||||
Sbjct: 1991 aaggcctactccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcg 2050

             
Query: 221  a 221
            |
Sbjct: 2051 a 2051



to top

>gb|AY106470.1| Zea mays PCO136952 mRNA sequence
          Length = 741

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 376 cggcgagaagaagagctacacggtgagcttcacggcgg 413
           |||||||||| |||||||||||||||||||||||||||
Sbjct: 341 cggcgagaagcagagctacacggtgagcttcacggcgg 378



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 182 ctcaactacccgtccttttccgtggc 207
           ||||||||||||||||| ||||||||
Sbjct: 165 ctcaactacccgtccttctccgtggc 190



to top

>ref|XM_469861.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2568

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 376  cggcgagaagaagagctacacggtgagcttcacggcggcc 415
            |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 2163 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2202



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 41   ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93
            ||||| |||||||||||| ||| | ||| ||||||||| |||||||| |||||
Sbjct: 1846 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 1898



to top

>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
              sequence
          Length = 128017

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 376    cggcgagaagaagagctacacggtgagcttcacggcggcc 415
              |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 105149 cggcgagaagcagagctacacggtgagcttcgcggcggcc 105110



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 41     ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93
              ||||| |||||||||||| ||| | ||| ||||||||| |||||||| |||||
Sbjct: 105466 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 105414



to top

>dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123P12, full
            insert sequence
          Length = 2813

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 376  cggcgagaagaagagctacacggtgagcttcacggcggcc 415
            |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 2411 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2450



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 41   ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93
            ||||| |||||||||||| ||| | ||| ||||||||| |||||||| |||||
Sbjct: 2094 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 2146



to top

>dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055P14, full
            insert sequence
          Length = 2667

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 376  cggcgagaagaagagctacacggtgagcttcacggcggcc 415
            |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 2216 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2255



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 41   ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgc 93
            ||||| |||||||||||| ||| | ||| ||||||||| |||||||| |||||
Sbjct: 1899 ccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgcgc 1951



to top

>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0067H15, complete sequence
          Length = 184316

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                         
Query: 89    tgcgcgctcaagtacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacggg 148
             ||||||||||| |||||  | | ||||||||||||  ||||| ||||||||  |||||| 
Sbjct: 84302 tgcgcgctcaactacacatccaccatgatcgccgccgtggcgaggagcaagagctacggc 84243

                                                                        
Query: 149   tgcgccgcgaacaagacctactccgtctccaacctcaactacccgtccttttccgtggc 207
             ||| | | || |||| |||| ||| | | |||||||||||||||||||||  |||||||
Sbjct: 84242 tgctcggagagcaaggcctagtccatgtacaacctcaactacccgtccttcgccgtggc 84184



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                           
Query: 89      tgcgcgctcaagtacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacggg 148
               ||||||||||| |||||  | | ||||||||||||  ||||| ||||||||  |||||| 
Sbjct: 6959379 tgcgcgctcaactacacatccaccatgatcgccgccgtggcgaggagcaagagctacggc 6959320

                                                                          
Query: 149     tgcgccgcgaacaagacctactccgtctccaacctcaactacccgtccttttccgtggc 207
               ||| | | || |||| |||| ||| | | |||||||||||||||||||||  |||||||
Sbjct: 6959319 tgctcggagagcaaggcctagtccatgtacaacctcaactacccgtccttcgccgtggc 6959261



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 41       ccggggctcgtctacgacctcggcaccggcgactacg 77
                ||||| || ||||||||||||| | ||||||||||||
Sbjct: 17578275 ccgggcctggtctacgacctcgccgccggcgactacg 17578311



to top

>ref|XM_476161.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 978

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                       
Query: 112 catgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctactc 171
           ||||||||||||  ||||| ||||||||  |||||| ||| | | || |||| |||| ||
Sbjct: 700 catgatcgccgccgtggcgaggagcaagagctacggctgctcggagagcaaggcctagtc 641

                                               
Query: 172 cgtctccaacctcaactacccgtccttttccgtggc 207
           | | | |||||||||||||||||||||  |||||||
Sbjct: 640 catgtacaacctcaactacccgtccttcgccgtggc 605



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 41       ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctc 97
                ||||||||||||||||||  ||||  || ||||||| | ||| ||||||||||||||
Sbjct: 33001628 ccggggctcgtctacgacgccggcgtcgacgactacctcgacgtcctgtgcgcgctc 33001684



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 41      ccggggctcgtctacgacctcggcaccggcgactac 76
               ||||| |||||||||||||||| | ||| |||||||
Sbjct: 5530642 ccgggcctcgtctacgacctcgccgccgtcgactac 5530607



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     cgcgctggcgcggagcaagg 140
               ||||||||||||||||||||
Sbjct: 4653347 cgcgctggcgcggagcaagg 4653366



to top

>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 41    ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctc 97
             ||||||||||||||||||  ||||  || ||||||| | ||| ||||||||||||||
Sbjct: 47568 ccggggctcgtctacgacgccggcgtcgacgactacctcgacgtcctgtgcgcgctc 47624



to top

>ref|XM_474683.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2277

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   ccggggctcgtctacgacctc 61
            |||||||||||||||||||||
Sbjct: 1816 ccggggctcgtctacgacctc 1836



to top

>ref|XM_475134.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2355

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 41   ccggggctcgtctacgacctcggcaccggcgactacg 77
            ||||| || ||||||||||||| | ||||||||||||
Sbjct: 1849 ccgggcctggtctacgacctcgccgccggcgactacg 1885



to top

>gb|BT018407.1| Zea mays clone EL01N0326A09.d mRNA sequence
          Length = 1456

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 65/77 (84%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggcgccgggcacgtggnacccgacgcgcgcggtggnagccggggctcgtctacgacctcg 62
           |||||||||||||||| |||||| ||||||  ||| | |||||||| || |||||| |||
Sbjct: 608 ggcgccgggcacgtgg-acccgatgcgcgccatgg-acccggggctggtgtacgacatcg 665

                            
Query: 63  gcaccggcgactacgtg 79
           || |  |||||||||||
Sbjct: 666 gcccaagcgactacgtg 682



to top

>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
              complete sequence
          Length = 159932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 41     ccggggctcgtctacgacctcggcaccggcgactacg 77
              ||||| || ||||||||||||| | ||||||||||||
Sbjct: 108080 ccgggcctggtctacgacctcgccgccggcgactacg 108116



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 41      ccggggctcgtctacgacctc 61
               |||||||||||||||||||||
Sbjct: 5562093 ccggggctcgtctacgacctc 5562073



to top

>dbj|AK064686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D11, full
           insert sequence
          Length = 1125

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 41  ccggggctcgtctacgacctcggcaccggcgactacg 77
           ||||| || ||||||||||||| | ||||||||||||
Sbjct: 518 ccgggcctggtctacgacctcgccgccggcgactacg 554



to top

>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    ccggggctcgtctacgacctc 61
             |||||||||||||||||||||
Sbjct: 19300 ccggggctcgtctacgacctc 19280



to top

>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
              complete sequence
          Length = 150283

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     ccggggctcgtctacgacctc 61
              |||||||||||||||||||||
Sbjct: 116723 ccggggctcgtctacgacctc 116703



to top

>emb|Z75743.1|HSLUCA9 Human DNA sequence from clone XXcos-9 on chromosome 3, complete
            sequence
          Length = 24055

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 436  cgccgggttcggccggctggtgtgg 460
            |||||||| ||||||||||||||||
Sbjct: 3313 cgccgggtgcggccggctggtgtgg 3289



to top

>gb|AY790329.1| Pseudomonas sp. KBOS 17 PHA synthase I (phaC1), PHA depolymerase
            (phaZ), and PHA synthase II (phaC2) genes, complete cds
          Length = 4621

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  cggcgatcggcgagaagaag 388
            ||||||||||||||||||||
Sbjct: 1045 cggcgatcggcgagaagaag 1064



to top

>ref|XM_464493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2610

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 41   ccggggctcgtctacgacctcggcaccggcgactac 76
            ||||| |||||||||||||||| | ||| |||||||
Sbjct: 1986 ccgggcctcgtctacgacctcgccgccgtcgactac 2021



to top

>ref|XM_464494.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 41  ccggggctcgtctacgacctcggcaccggcgactac 76
           ||||| |||||||||||||||| | ||| |||||||
Sbjct: 782 ccgggcctcgtctacgacctcgccgccgtcgactac 817



to top

>ref|XM_464352.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1698

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  cgcgctggcgcggagcaagg 140
            ||||||||||||||||||||
Sbjct: 1065 cgcgctggcgcggagcaagg 1084



to top

>ref|NM_196673.1| Oryza sativa (japonica cultivar-group) putative soluble starch
            synthase II-1 (OSJNBb0016G17.2), mRNA
          Length = 3219

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  gtcgcagccgtcgggcaccg 437
            ||||||||||||||||||||
Sbjct: 2970 gtcgcagccgtcgggcaccg 2951



to top

>ref|XM_953219.1| Neurospora crassa OR74A hypothetical protein (NCU09913.1) partial
           mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cgacctcggcaccggcgact 74
           ||||||||||||||||||||
Sbjct: 762 cgacctcggcaccggcgact 781



to top

>ref|XM_329660.1| Neurospora crassa OR74A hypothetical protein (NCU09913.1) partial
           mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cgacctcggcaccggcgact 74
           ||||||||||||||||||||
Sbjct: 762 cgacctcggcaccggcgact 781



to top

>gb|AF423758.1| HIV-1 isolate X475 from Spain, complete genome
          Length = 8945

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  aactgctgacaccgctgctg 569
            ||||||||||||||||||||
Sbjct: 8838 aactgctgacaccgctgctg 8857



to top

>gb|AE005803.1| Caulobacter crescentus CB15 section 129 of 359 of the complete genome
          Length = 10483

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 312  cctcggtgtccatgtccggggtga 335
            ||||||||| ||||||||||||||
Sbjct: 1123 cctcggtgttcatgtccggggtga 1100



to top

>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   gtcgcagccgtcgggcaccg 437
             ||||||||||||||||||||
Sbjct: 22624 gtcgcagccgtcgggcaccg 22605



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 418      gtcgcagccgtcgggcaccg 437
                ||||||||||||||||||||
Sbjct: 15168925 gtcgcagccgtcgggcaccg 15168906



to top

>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
             complete sequence
          Length = 129420

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   gtcgcagccgtcgggcaccg 437
             ||||||||||||||||||||
Sbjct: 77538 gtcgcagccgtcgggcaccg 77519



to top

>dbj|AB220636.1| Uncultured bacterium phaC gene for PHA synthase, partial cds,
           clone:N-33
          Length = 479

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 cggcgatcggcgagaagaag 388
           ||||||||||||||||||||
Sbjct: 257 cggcgatcggcgagaagaag 276



to top

>dbj|AB220618.1| Uncultured bacterium phaC gene for PHA synthase, partial cds,
           clone:N-14
          Length = 479

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 cggcgatcggcgagaagaag 388
           ||||||||||||||||||||
Sbjct: 257 cggcgatcggcgagaagaag 276



to top

>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0026H03
          Length = 151827

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 41    ccggggctcgtctacgacctcggcaccggcgactac 76
             ||||| |||||||||||||||| | ||| |||||||
Sbjct: 75377 ccgggcctcgtctacgacctcgccgccgtcgactac 75342



to top

>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1572_F02
          Length = 93626

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   cgcgctggcgcggagcaagg 140
             ||||||||||||||||||||
Sbjct: 25419 cgcgctggcgcggagcaagg 25438



to top

>dbj|AK120287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B17, full
            insert sequence
          Length = 2614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 41   ccggggctcgtctacgacctcggcaccggcgactac 76
            ||||| |||||||||||||||| | ||| |||||||
Sbjct: 1990 ccgggcctcgtctacgacctcgccgccgtcgactac 2025



to top

>dbj|AK106394.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F05, full
           insert sequence
          Length = 1408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 41  ccggggctcgtctacgacctcggcaccggcgactac 76
           ||||| |||||||||||||||| | ||| |||||||
Sbjct: 782 ccgggcctcgtctacgacctcgccgccgtcgactac 817



to top

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 238     ctccggcgccaccacggtga 257
               ||||||||||||||||||||
Sbjct: 1038314 ctccggcgccaccacggtga 1038295



to top

>dbj|AK062774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A06, full
           insert sequence
          Length = 849

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 418 gtcgcagccgtcgggcaccg 437
           ||||||||||||||||||||
Sbjct: 348 gtcgcagccgtcgggcaccg 329



to top

>gb|AY108210.1| Zea mays PCO096605 mRNA sequence
          Length = 1795

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 41   ccggggctcgtctacgacctcggcaccggcga 72
            |||||||| || |||||||||||| |||||||
Sbjct: 999  ccggggctggtgtacgacctcggcgccggcga 1030



to top

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 426     cgtcgggcaccgccgggttc 445
               ||||||||||||||||||||
Sbjct: 2520997 cgtcgggcaccgccgggttc 2520978



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 418      gtcgcagccgtcgggcaccg 437
                ||||||||||||||||||||
Sbjct: 15177166 gtcgcagccgtcgggcaccg 15177147


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,527,093
Number of Sequences: 3902068
Number of extensions: 2527093
Number of successful extensions: 54969
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54228
Number of HSP's gapped (non-prelim): 732
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top