ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalc19 |
|---|---|
| Clone Library Name | barley_pub |
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 163 bits (413), Expect = 1e-40 Identities = 77/80 (96%), Positives = 78/80 (97%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIADAPTNVQ PGMYNKEENPRVPI+V Sbjct: 210 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIV 269 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 270 TGNDFSTLYAPLIRDGRMEK 289
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 162 bits (409), Expect = 3e-40 Identities = 77/80 (96%), Positives = 77/80 (96%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIADAPTNVQ PGMYNK ENPRVPIVV Sbjct: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVV 272 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 273 TGNDFSTLYAPLIRDGRMEK 292
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 161 bits (407), Expect = 5e-40 Identities = 76/80 (95%), Positives = 77/80 (96%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKEENPRVPI+V Sbjct: 223 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 282 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 283 TGNDFSTLYAPLIRDGRMEK 302
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 161 bits (407), Expect = 5e-40 Identities = 76/80 (95%), Positives = 77/80 (96%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKEENPRVPI+V Sbjct: 223 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 282 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 283 TGNDFSTLYAPLIRDGRMEK 302
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 160 bits (404), Expect = 1e-39 Identities = 75/80 (93%), Positives = 77/80 (96%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKE+NPRVPI+V Sbjct: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIV 272 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 273 TGNDFSTLYAPLIRDGRMEK 292
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 159 bits (401), Expect = 2e-39 Identities = 74/80 (92%), Positives = 77/80 (96%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGR+GGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKEENPRVPI+V Sbjct: 220 CCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 279 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRM+K Sbjct: 280 TGNDFSTLYAPLIRDGRMDK 299
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 157 bits (396), Expect = 9e-39 Identities = 74/80 (92%), Positives = 76/80 (95%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNK+EN RVPI+V Sbjct: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 281 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 282 TGNDFSTLYAPLIRDGRMEK 301
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 157 bits (396), Expect = 9e-39 Identities = 74/80 (92%), Positives = 76/80 (95%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNK+EN RVPI+V Sbjct: 227 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 286 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 287 TGNDFSTLYAPLIRDGRMEK 306
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 157 bits (396), Expect = 9e-39 Identities = 74/80 (92%), Positives = 76/80 (95%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNK+EN RVPI+V Sbjct: 227 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 286 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 287 TGNDFSTLYAPLIRDGRMEK 306
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 156 bits (395), Expect = 1e-38 Identities = 74/80 (92%), Positives = 76/80 (95%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C LFINDLDAGAGR+GGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKEENPRVPI+V Sbjct: 223 CALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 282 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 283 TGNDFSTLYAPLIRDGRMEK 302
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 156 bits (395), Expect = 1e-38 Identities = 74/79 (93%), Positives = 76/79 (96%) Frame = +3 Query: 6 CLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVVT 185 CLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKE+NPRVPI+VT Sbjct: 220 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVT 279 Query: 186 GNDFSTLYAPLIRDGRMEK 242 GNDFSTLYAPLIRDGRMEK Sbjct: 280 GNDFSTLYAPLIRDGRMEK 298
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 156 bits (394), Expect = 2e-38 Identities = 74/80 (92%), Positives = 75/80 (93%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 CCLFINDLDAGAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKEEN RVPI+ Sbjct: 223 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIC 282 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 283 TGNDFSTLYAPLIRDGRMEK 302
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 153 bits (387), Expect = 1e-37 Identities = 73/80 (91%), Positives = 75/80 (93%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C LFINDLDAGAGR+GGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKEEN RVPI+V Sbjct: 225 CALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIV 284 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 285 TGNDFSTLYAPLIRDGRMEK 304
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 152 bits (383), Expect = 3e-37 Identities = 72/80 (90%), Positives = 75/80 (93%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C LFINDLDAGAGR+GGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNKE+N RVPI+V Sbjct: 227 CVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIV 286 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 287 TGNDFSTLYAPLIRDGRMEK 306
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 149 bits (375), Expect = 2e-36 Identities = 70/80 (87%), Positives = 74/80 (92%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C LFINDL+ GAGRMGGTTQYTVNNQM NATLMNIAD PTNVQ PGMYNK++N RVPI+V Sbjct: 221 CALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIV 280 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 281 TGNDFSTLYAPLIRDGRMEK 300
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 144 bits (362), Expect = 8e-35 Identities = 70/80 (87%), Positives = 71/80 (88%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C LFINDLDAGAGRMG TTQYTVNNQM NATLMNIAD PTNVQ PG+Y EE PRVPIV Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 256 TGNDFSTLYAPLIRDGRMEK 275
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 122 bits (305), Expect = 3e-28 Identities = 60/80 (75%), Positives = 64/80 (80%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C L INDLDAGAGR TQYTVN Q+ NATLMNIAD PT+VQ PG Y+ RVPI+V Sbjct: 96 CVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIV 155 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 156 TGNDFSTLYAPLIRDGRMEK 175
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 121 bits (304), Expect = 4e-28 Identities = 60/80 (75%), Positives = 64/80 (80%) Frame = +3 Query: 3 CCLFINDLDAGAGRMGGTTQYTVNNQMXNATLMNIADAPTNVQXPGMYNKEENPRVPIVV 182 C L INDLDAGAGR TQYTVN Q+ NATLMNIAD PT+VQ PG Y+ RVPI+V Sbjct: 96 CVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIV 155 Query: 183 TGNDFSTLYAPLIRDGRMEK 242 TGNDFSTLYAPLIRDGRMEK Sbjct: 156 TGNDFSTLYAPLIRDGRMEK 175
>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (HEP) Length = 1006 Score = 30.8 bits (68), Expect = 0.97 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -2 Query: 165 GGSPPCCTCQGXARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 40 GGSPP C G +W G RC G++ G C A R Y Sbjct: 263 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 307
>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1005 Score = 30.8 bits (68), Expect = 0.97 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -2 Query: 165 GGSPPCCTCQGXARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 40 GGSPP C G +W G RC G++ G C A R Y Sbjct: 262 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 306
>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (MEP) Length = 1014 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Frame = -2 Query: 165 GGSPPCCTCQGXARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 40 GGSPP C G RW G RC G + G C A SY Sbjct: 273 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 317
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1013 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Frame = -2 Query: 165 GGSPPCCTCQGXARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 40 GGSPP C G RW G RC G + G C A SY Sbjct: 272 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 316
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%) Frame = +2 Query: 29 RWCG*DGRNH--AVHRQQPDGERHPDEH 106 RW G RNH + Q DG RHP H Sbjct: 3554 RWSGSASRNHRGSAQEQSRDGSRHPTSH 3581 Score = 29.3 bits (64), Expect = 2.8 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 13/66 (19%) Frame = +2 Query: 29 RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPH-------QRAXPWHVQ--QGGEPPC 169 RW G RNH + Q DG RHP H+ R H +++ H Q GG+ Sbjct: 2906 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAAS 2965 Query: 170 AHRRHR 187 +H + R Sbjct: 2966 SHEQAR 2971 Score = 29.3 bits (64), Expect = 2.8 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 13/66 (19%) Frame = +2 Query: 29 RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPH-------QRAXPWHVQ--QGGEPPC 169 RW G RNH + Q DG RHP H+ R H +++ H Q GG+ Sbjct: 2582 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAAS 2641 Query: 170 AHRRHR 187 +H + R Sbjct: 2642 SHEQAR 2647 Score = 28.9 bits (63), Expect = 3.7 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%) Frame = +2 Query: 29 RWCG*DGRNH--AVHRQQPDGERHPDEH 106 RW G RNH + Q DG RHP H Sbjct: 636 RWSGSASRNHHGSAQEQSRDGSRHPRSH 663 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%) Frame = +2 Query: 29 RWCG*DGRNH--AVHRQQPDGERHPDEH 106 RW G RNH + Q DG RHP H Sbjct: 1933 RWSGSASRNHLGSAWEQSRDGSRHPGSH 1960
>SCN4A_RAT (P15390) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (Mu-1) Length = 1840 Score = 28.1 bits (61), Expect = 6.3 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 225 RALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCL 261
>SCN4A_HUMAN (P35499) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (SkM1) Length = 1836 Score = 28.1 bits (61), Expect = 6.3 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 225 RALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCL 261
>MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1) (Protein nM15)| Length = 529 Score = 27.7 bits (60), Expect = 8.2 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Frame = -2 Query: 174 WAHGGSPPCCTCQGXARWWGHR--RCSSGWRSPSGC*RCTAWFRPS 43 W H +P +G + W G R SGW PS +AW PS Sbjct: 214 WEHPNTP-----RGLSGWEGPSTSRILSGWEGPSASWALSAWEGPS 254
>SCN9A_HUMAN (Q15858) Sodium channel protein type 9 alpha subunit (Sodium| channel protein type IX alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.7) (Neuroendocrine sodium channel) (hNE-Na) (Peripheral sodium channel 1) Length = 1988 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 220 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 256
>SCN2A_RAT (P04775) Sodium channel protein type 2 alpha subunit (Sodium| channel protein type II alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.2) (Sodium channel protein, brain II alpha subunit) Length = 2005 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 223 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 259
>SCN2A_HUMAN (Q99250) Sodium channel protein type 2 alpha subunit (Sodium| channel protein type II alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.2) (Sodium channel protein, brain II alpha subunit) (HBSC II) Length = 2005 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 223 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 259
>SCN1A_RAT (P04774) Sodium channel protein type 1 alpha subunit (Sodium| channel protein type I alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.1) (Sodium channel protein, brain I alpha subunit) Length = 2009 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 222 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 258
>SCN1A_HUMAN (P35498) Sodium channel protein type 1 alpha subunit (Sodium| channel protein type I alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.1) (Sodium channel protein, brain I alpha subunit) Length = 2009 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 222 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 258
>SCN9A_RAT (O08562) Sodium channel protein type 9 alpha subunit (Sodium| channel protein type IX alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.7) (Peripheral sodium channel 1) (PN1) Length = 1984 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 220 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 256
>SCN8A_MOUSE (Q9WTU3) Sodium channel protein type 8 alpha subunit (Sodium| channel protein type VIII alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.6) Length = 1978 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 226 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 262
>SCN3A_RAT (P08104) Sodium channel protein type 3 alpha subunit (Sodium| channel protein type III alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.3) (Sodium channel protein, brain III alpha subunit) (Voltage-gated sodium channel subtype III Length = 1951 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 222 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 258
>K6PF_SCHPO (O42938) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) (6PF-1-K) Length = 942 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 98 DEHRRCPHQRAXPWHVQQGGEP 163 + H+R + A P HVQQGG P Sbjct: 835 EAHKRFSARTAVPGHVQQGGNP 856
>P2RY2_BOVIN (O18951) P2Y purinoceptor 2 (P2Y2) (Fragment)| Length = 133 Score = 27.7 bits (60), Expect = 8.2 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -1 Query: 97 RVAFXIWLLTVYCVVP 50 RVAF +W+L +YC P Sbjct: 26 RVAFAVWVLVLYCQAP 41
>SCN8A_HUMAN (Q9UQD0) Sodium channel protein type 8 alpha subunit (Sodium| channel protein type VIII alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.6) Length = 1980 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 226 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 262
>SCN3A_HUMAN (Q9NY46) Sodium channel protein type 3 alpha subunit (Sodium| channel protein type III alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.3) (Sodium channel protein, brain III alpha subunit) (Voltage-gated sodium channel subtype I Length = 2000 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 166 RGFSSLLYMPGXCTLVGASAMFIRVAFXIWLLTVYCV 56 R ++ +PG T+VGA ++ + +LTV+C+ Sbjct: 222 RALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCL 258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,381,890 Number of Sequences: 219361 Number of extensions: 653901 Number of successful extensions: 2065 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2064 length of database: 80,573,946 effective HSP length: 56 effective length of database: 68,289,730 effective search space used: 1638953520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
