ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalc18 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 277 bits (708), Expect(2) = 6e-82 Identities = 135/136 (99%), Positives = 135/136 (99%) Frame = +3 Query: 138 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSL 317 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSL Sbjct: 26 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSL 85 Query: 318 FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 497 FQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI Sbjct: 86 FQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 145 Query: 498 KIPLILGIWGGKGQGK 545 KIPLILGIWGGKGQGK Sbjct: 146 KIPLILGIWGGKGQGK 161 Score = 47.0 bits (110), Expect(2) = 6e-82 Identities = 22/23 (95%), Positives = 23/23 (100%) Frame = +1 Query: 61 MAAAFSSTVGAPASTPTNFLGKE 129 MAAAFSSTVGAPASTPTNFLGK+ Sbjct: 1 MAAAFSSTVGAPASTPTNFLGKK 23
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 244 bits (623), Expect(2) = 4e-72 Identities = 120/138 (86%), Positives = 127/138 (92%), Gaps = 2/138 (1%) Frame = +3 Query: 138 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD--KWKGLAYDISDDQQDITRGKGIVD 311 KQVTSAVNYHGKSS NRF VMA E +DE + TD +WKGLAYDISDDQQDITRGKG VD Sbjct: 26 KQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVD 84 Query: 312 SLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLP 491 SLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTMGGFYIAP+FMDKLVVH+SKNFMTLP Sbjct: 85 SLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFMDKLVVHISKNFMTLP 144 Query: 492 NIKIPLILGIWGGKGQGK 545 NIK+PLILGIWGGKGQGK Sbjct: 145 NIKVPLILGIWGGKGQGK 162 Score = 47.0 bits (110), Expect(2) = 4e-72 Identities = 22/23 (95%), Positives = 23/23 (100%) Frame = +1 Query: 61 MAAAFSSTVGAPASTPTNFLGKE 129 MAAAFSSTVGAPASTPTNFLGK+ Sbjct: 1 MAAAFSSTVGAPASTPTNFLGKK 23
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 219 bits (559), Expect(2) = 1e-62 Identities = 106/144 (73%), Positives = 123/144 (85%), Gaps = 3/144 (2%) Frame = +3 Query: 123 ERSSSKQVTSAVNYHGKSSKAN-RFTVMAAENIDEKRNTD--KWKGLAYDISDDQQDITR 293 ++ + QV++AV YHGKSS +N RF MAA+ +DE + TD +WKGLAYDISDDQQDITR Sbjct: 24 KKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITR 83 Query: 294 GKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSK 473 GKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+FDN M GFYIA FMDKLVVHLSK Sbjct: 84 GKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSK 143 Query: 474 NFMTLPNIKIPLILGIWGGKGQGK 545 NFMTLPNIK+PLILGIWGGKGQGK Sbjct: 144 NFMTLPNIKVPLILGIWGGKGQGK 167 Score = 40.0 bits (92), Expect(2) = 1e-62 Identities = 21/25 (84%), Positives = 23/25 (92%), Gaps = 2/25 (8%) Frame = +1 Query: 61 MAAAFSSTVGAPASTPT--NFLGKE 129 MAAAFSSTVGAPASTPT +FLGK+ Sbjct: 1 MAAAFSSTVGAPASTPTRSSFLGKK 25
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 212 bits (539), Expect(2) = 3e-61 Identities = 104/132 (78%), Positives = 116/132 (87%), Gaps = 4/132 (3%) Frame = +3 Query: 162 YHGKSSKANRFT-VMAAEN-IDEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAP 329 YHG + +R VMAA+ +D+ + TD +WKGLAYDISDDQQDITRGKGIVDSLFQAP Sbjct: 28 YHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAP 87 Query: 330 TGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPL 509 GDGTHEA+LSSYEY+SQGLRKYDFDNTM G YIAPAFMDKL+VHL+KNFMTLPNIK+PL Sbjct: 88 MGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPL 147 Query: 510 ILGIWGGKGQGK 545 ILGIWGGKGQGK Sbjct: 148 ILGIWGGKGQGK 159 Score = 42.7 bits (99), Expect(2) = 3e-61 Identities = 20/25 (80%), Positives = 23/25 (92%) Frame = +1 Query: 61 MAAAFSSTVGAPASTPTNFLGKEAQ 135 MA+AFSSTVGAPASTPT FLGK+ + Sbjct: 1 MASAFSSTVGAPASTPTIFLGKKVK 25
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 200 bits (508), Expect = 2e-51 Identities = 98/156 (62%), Positives = 117/156 (75%) Frame = +3 Query: 78 LHRRGSGFYADQLPRERSSSKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 257 L GSG A P K+V + + + K+N + A D++ + D+W+GLA Sbjct: 16 LSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75 Query: 258 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 437 YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP Sbjct: 76 YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135 Query: 438 AFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 AFMDKLVVH++KNF+TLPNIK+PLILGIWGGKGQGK Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGK 171
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 195 bits (496), Expect = 6e-50 Identities = 98/157 (62%), Positives = 119/157 (75%), Gaps = 1/157 (0%) Frame = +3 Query: 78 LHRRGSGFYADQLPRERSSSKQVTSAVNYHGKSSKANRFTVMAAE-NIDEKRNTDKWKGL 254 L GSG A +P + + K+S N F ++A E + D++ + DKWKGL Sbjct: 16 LSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGN-FKIVAQEISEDQQTDKDKWKGL 74 Query: 255 AYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 434 AYDISDDQQDITRGKG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y+ DN M GFYIA Sbjct: 75 AYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIA 134 Query: 435 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 PAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGK Sbjct: 135 PAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGK 171
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 195 bits (496), Expect = 6e-50 Identities = 98/157 (62%), Positives = 119/157 (75%), Gaps = 1/157 (0%) Frame = +3 Query: 78 LHRRGSGFYADQLPRERSSSKQVTSAVNYHGKSSKANRFTVMAAE-NIDEKRNTDKWKGL 254 L GSG A +P + + K+S N F ++A E + D++ + DKWKGL Sbjct: 16 LSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGN-FKIVAQEISEDQQTDKDKWKGL 74 Query: 255 AYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 434 AYDISDDQQDITRGKG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y+ DN M GFYIA Sbjct: 75 AYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIA 134 Query: 435 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 PAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGK Sbjct: 135 PAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGK 171
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 192 bits (488), Expect = 5e-49 Identities = 91/132 (68%), Positives = 109/132 (82%), Gaps = 2/132 (1%) Frame = +3 Query: 156 VNYHGKSSKANRFTVMAAENIDEKRNTDK--WKGLAYDISDDQQDITRGKGIVDSLFQAP 329 VN +SK + ++ ++DE + TDK WKGLA+D SDDQQDITRGKG VDSLFQAP Sbjct: 40 VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAP 99 Query: 330 TGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPL 509 G GTH A++SSYEY+S GLR+Y+FDN M G+YIAPAFMDKLVVH++KNFMTLPN+K+PL Sbjct: 100 QGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPL 159 Query: 510 ILGIWGGKGQGK 545 ILGIWGGKGQGK Sbjct: 160 ILGIWGGKGQGK 171
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 187 bits (475), Expect = 2e-47 Identities = 89/124 (71%), Positives = 104/124 (83%), Gaps = 4/124 (3%) Frame = +3 Query: 186 NRFTVMAAENID----EKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEA 353 N+ + AE ID ++ ++D+WKGL D SDDQQDITRGKG+VDSLFQAPTG GTH A Sbjct: 52 NKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHA 111 Query: 354 VLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGK 533 VL SYEYVSQGLR+Y+ DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLILGIWGGK Sbjct: 112 VLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGK 171 Query: 534 GQGK 545 GQGK Sbjct: 172 GQGK 175
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 186 bits (472), Expect = 4e-47 Identities = 90/124 (72%), Positives = 104/124 (83%), Gaps = 4/124 (3%) Frame = +3 Query: 186 NRFTVMAAE--NIDEKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEA 353 NR +AAE + D K+ T D+WKGL D SDDQQDI RGKG+VDSLFQAPTG GTH A Sbjct: 52 NRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHA 111 Query: 354 VLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGK 533 VL SYEYVSQGLR+Y+ DNT+ GFYIAP+FMDKLVVH++KNF+ LPNIK+PLILG+WGGK Sbjct: 112 VLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGK 171 Query: 534 GQGK 545 GQGK Sbjct: 172 GQGK 175
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 185 bits (470), Expect = 6e-47 Identities = 90/141 (63%), Positives = 114/141 (80%), Gaps = 2/141 (1%) Frame = +3 Query: 129 SSSKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAYDISDDQQDITRGKG 302 +S K+V S+ + K + + V A + I+E + T D+W+GLAYD+SDDQQDITRGKG Sbjct: 35 TSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKG 94 Query: 303 IVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFM 482 +VDSLFQAP GTH AV+SS++Y+S GLR+Y+FDN GFYIAPAF+DKLVVH++KNFM Sbjct: 95 LVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFM 154 Query: 483 TLPNIKIPLILGIWGGKGQGK 545 TLPNIK+PLILG+WGGKGQGK Sbjct: 155 TLPNIKVPLILGVWGGKGQGK 175
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 184 bits (468), Expect = 1e-46 Identities = 84/148 (56%), Positives = 106/148 (71%) Frame = +3 Query: 102 YADQLPRERSSSKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQ 281 Y +P ++ + + F ++A ++ +++ DKW+GLA+D SDDQQ Sbjct: 21 YGGLVPNSAFLGSRLKVSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQ 80 Query: 282 DITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVV 461 DITRGKG+ D LFQAP G GTH AVLSSYEY+S GLR Y +DN + GFYIAPAFMDKL V Sbjct: 81 DITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTV 140 Query: 462 HLSKNFMTLPNIKIPLILGIWGGKGQGK 545 H+ KNF+TLPNIK+PLILG+WGGKGQGK Sbjct: 141 HIVKNFLTLPNIKVPLILGVWGGKGQGK 168
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 182 bits (463), Expect(2) = 2e-46 Identities = 89/124 (71%), Positives = 100/124 (80%) Frame = +3 Query: 174 SSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEA 353 SS+ TV AAEN E++NTDKW LA D SDDQ DI RGKG+VDSLFQAP GTH Sbjct: 48 SSRTTSMTVKAAEN--EEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVP 105 Query: 354 VLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGK 533 + SS+EY SQGLRKYD DN +G FYIAPAFMDKLVVH++KNF+ LPNIKIPLILG+WGGK Sbjct: 106 IQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGK 165 Query: 534 GQGK 545 GQGK Sbjct: 166 GQGK 169 Score = 22.3 bits (46), Expect(2) = 2e-46 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = +1 Query: 79 STVGAPASTPTNFLGKEAQAS 141 STVGA P N G A AS Sbjct: 6 STVGAATRAPLNLNGSSAGAS 26
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 180 bits (457), Expect = 2e-45 Identities = 83/121 (68%), Positives = 101/121 (83%) Frame = +3 Query: 183 ANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 362 +NR + A+ +DE + D+WKGL + SDDQQDI RGKG+VDSLFQAPTG GTH A+++ Sbjct: 51 SNRNLRVVAQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMN 109 Query: 363 SYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQG 542 SYEYVSQ L+ Y DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLILG+WGGKGQG Sbjct: 110 SYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQG 169 Query: 543 K 545 K Sbjct: 170 K 170
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 179 bits (453), Expect = 6e-45 Identities = 99/162 (61%), Positives = 116/162 (71%), Gaps = 5/162 (3%) Frame = +3 Query: 75 LLHRRGSGFYADQLPRERSSSKQVTSAVNYHGKSSKANR--FTVMAAEN-IDEKRNT--D 239 +L+ GSG A P + AV +SK F ++AAE I+E + T D Sbjct: 15 ILNLNGSGAGASA-PTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKD 73 Query: 240 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMG 419 +WKGLAYDISDDQQDITRGKG+VD LFQAP GTH AV+SSYEY+S GLR+ DN Sbjct: 74 RWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKD 131 Query: 420 GFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 GFYIAPAF+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGK Sbjct: 132 GFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGK 173
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 130 bits (326), Expect = 3e-30 Identities = 64/110 (58%), Positives = 81/110 (73%), Gaps = 3/110 (2%) Frame = +3 Query: 225 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 395 ++ +W+ + D SDDQQDITRG+ +VD LFQ G GTH AVLSS EY+SQ + Sbjct: 37 RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94 Query: 396 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 F+N GFYI+PAF+DK+ +H++KNFM LP IK+PLILGIWGGKGQGK Sbjct: 95 ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGK 144
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 64.3 bits (155), Expect = 2e-10 Identities = 26/41 (63%), Positives = 35/41 (85%) Frame = +3 Query: 423 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK Sbjct: 3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGK 43
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 63.5 bits (153), Expect = 4e-10 Identities = 25/41 (60%), Positives = 35/41 (85%) Frame = +3 Query: 423 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGK 545 +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGK 43
>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)| Length = 1992 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/58 (34%), Positives = 22/58 (37%) Frame = +3 Query: 18 AHPPLLARSTKQHRDGCCLLLHRRGSGFYADQLPRERSSSKQVTSAVNYHGKSSKANR 191 A P L RST+Q G C RRGSG R K N +S A R Sbjct: 315 AELPSLRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPESNQEAVNSSAAR 372
>RS7_PSYAR (Q4FQG4) 30S ribosomal protein S7| Length = 157 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = +3 Query: 114 LPRERSSSKQVTSAVNY---HGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQD 284 LP + S+ V +N+ HGK S A R A E + +KRN + D+ ++ + Sbjct: 13 LPDPKFGSQTVAKFINHVMSHGKKSTAERIVYGALETVSQKRNIEDPVSFFEDVLENVRP 72 Query: 285 I--TRGKGIVDSLFQAP 329 + + + + + +Q P Sbjct: 73 MVEVKARRVGGATYQVP 89
>PTR2_CANAL (P46030) Peptide transporter PTR2| Length = 623 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Frame = -3 Query: 340 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 194 P+P+ AWK+ S CW + E++Y R ++FL S FSAA+++ Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546
>PCRB_SULAC (Q4JAS3) Protein pcrB homolog| Length = 257 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -2 Query: 428 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 252 +EA G E V P+A+ V +DG+V EER + + +G ++V G+++ + Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234
>IL12B_SIGHI (Q91ZK7) Interleukin-12 beta chain precursor (IL-12B) (IL-12 p40)| (Cytotoxic lymphocyte maturation factor 40 kDa subunit) (CLMF p40) Length = 327 Score = 31.2 bits (69), Expect = 2.0 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 14/134 (10%) Frame = +3 Query: 72 LLLHRRGSGFYADQLPRERSSSKQVT----SAVNYHGKS--------SKANRFTVMAAEN 215 LLLH++ G ++ + +++ K T A NY G+ S +F++ ++ + Sbjct: 102 LLLHKKEDGIWSTDILKDQKDPKNKTFLKCEAANYSGRFTCWWLTAVSTDLKFSLKSSSS 161 Query: 216 IDEKRN-TDKWKGLAYD-ISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 389 + R+ T L+ + ++ DQ+D + PT + T E V + Sbjct: 162 SSDSRSVTCGAASLSTEKVTVDQRDYNKYSVACQEDITCPTAEET-----LPIELVMEAQ 216 Query: 390 RKYDFDNTMGGFYI 431 KY ++N GF+I Sbjct: 217 HKYKYENYSTGFFI 230
>DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycosylase-related| protein DME) Length = 1729 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = +3 Query: 123 ERSSSKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKG 302 E +SS + +AV Y K + A M D K+ T +W L D+ ++ R K Sbjct: 1154 ESNSSNKEQTAVEY--KETNATILREMKGTLADGKKPTSQWDSLRKDVEGNEGRQERNKN 1211 Query: 303 IVDSLFQAPTGDGTHEAV-LSSYEYVSQGLRKYDFDNTM 416 +DS+ +EA+ +S +S+ +++ +N + Sbjct: 1212 NMDSI--------DYEAIRRASISEISEAIKERGMNNML 1242
>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 251 Score = 30.4 bits (67), Expect = 3.4 Identities = 26/95 (27%), Positives = 42/95 (44%) Frame = -2 Query: 533 LASPDTQDEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAED 354 L T++E + G ++ G + L +E G E + P+A DVL+ AE Sbjct: 158 LVEVHTREELTAALAAGADIVGINNRDL-----GKLEVDLGTFEELAPEAPEDVLLVAES 212 Query: 353 GLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 249 G+ R+ E DAL G ++ GD+ + T Sbjct: 213 GVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246
>ACCA_STRT2 (Q5M5R1) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 256 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = +3 Query: 285 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 455 I +GK + D+L F P +G +A+ + G F NT G + A Sbjct: 62 IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRSVVTFINTAGAYPGVGAEERGQ 121 Query: 456 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 542 +++N M + ++K+P+I I G G G Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150
>ACCA_STRR6 (Q8DR13) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 255 Score = 30.0 bits (66), Expect = 4.4 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = +3 Query: 285 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 455 I +GK + D+L F P +G +A+ + G F NT G + A Sbjct: 61 IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120 Query: 456 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 542 +++N M + ++K+P+I I G G G Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149
>ACCA_STRPN (Q9FBB7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 255 Score = 30.0 bits (66), Expect = 4.4 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = +3 Query: 285 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 455 I +GK + D+L F P +G +A+ + G F NT G + A Sbjct: 61 IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120 Query: 456 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 542 +++N M + ++K+P+I I G G G Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149
>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 289 Score = 30.0 bits (66), Expect = 4.4 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 500 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 336 + +G H ++DN+ + ++S+ A+H + + P+AL + LV A L + Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233 Query: 335 ARGRLEERVHDALPSGDVLLVVG 267 + L+ER H LPSG L+ G Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253
>ACCA_STRT1 (Q5M174) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 256 Score = 30.0 bits (66), Expect = 4.4 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = +3 Query: 285 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 455 I +GK + D+L F P +G +A+ + G F NT G + A Sbjct: 62 IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 121 Query: 456 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 542 +++N M + ++K+P+I I G G G Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150
>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1060 Score = 29.6 bits (65), Expect = 5.8 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%) Frame = +3 Query: 159 NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 338 N+H K + + A + D R LAY+++D + D +F A +G Sbjct: 807 NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858 Query: 339 GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 497 G HEA E S+ KYDF+ + G + P + L NF L + Sbjct: 859 GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907
>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107| Length = 1070 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = +3 Query: 171 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 329 K + + +++ E++ K++TDK+ L +SD+ I K V+S + P Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740
>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 289 Score = 29.3 bits (64), Expect = 7.6 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 500 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 336 + +G H ++DN+ + ++S+ A+H + + P+AL + LV A L + Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233 Query: 335 ARGRLEERVHDALPSGDVLLVVG 267 + L+ER H LPSG L+ G Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253
>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 289 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 500 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 336 + +G H ++DN+ + ++S+ A+H + + P+AL + L+ A L + Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233 Query: 335 ARGRLEERVHDALPSGDVLLVVG 267 + L+ER H LPSG L+ G Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253
>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC| 3.1.3.48) (Protein tyrosine phosphatase PTP-BL) (Protein-tyrosine phosphatase RIP) (protein tyrosine phosphatase DPZPTP) (PTP36) Length = 2453 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +3 Query: 261 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 395 D S +D RGKG+ THEA LS +V++GL K Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239
>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 421 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 228 RNTDKWKGLAYDISDDQQDITRGKGI 305 R+ K KG A++ISDD + + KGI Sbjct: 46 RDVKKHKGYAFEISDDLESVIEDKGI 71
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 28.9 bits (63), Expect = 9.9 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -2 Query: 509 EWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVAR 330 +W + G+G E +N L + S+ + S G + DV G E G V+ Sbjct: 83 DWAEEGGEGSVAVEETENSLESQDVSEGDESEG------DASEGDVSEGDES--EGDVSE 134 Query: 329 GRLEERVHDALPSGDVLLVVGDI 261 G + ER PS + L VG++ Sbjct: 135 GAVSERAEFPEPSEEAKLFVGNL 157
>IL12B_MESAU (Q8CJE6) Interleukin-12 beta chain precursor (IL-12B) (IL-12 p40)| (Cytotoxic lymphocyte maturation factor 40 kDa subunit) (CLMF p40) Length = 327 Score = 28.9 bits (63), Expect = 9.9 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 26/146 (17%) Frame = +3 Query: 72 LLLHRRGSGFYADQLPRERSSSKQVT----SAVNYHGK---------------------- 173 LLLH++ +G ++ + +++ K T A NY G+ Sbjct: 102 LLLHKKENGIWSTDILKDQKDPKNKTFLKCEAANYSGRFTCWWLTAISTDLKFNVKSSSS 161 Query: 174 SSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEA 353 SS + T AA EK D+ Y ++ Q+DIT PT + T Sbjct: 162 SSDSRAVTCGAASLSAEKVTVDRKDYQKYSVA-CQEDIT-----------CPTAEETLPI 209 Query: 354 VLSSYEYVSQGLRKYDFDNTMGGFYI 431 L V + KY ++N GF+I Sbjct: 210 GL-----VMEAQHKYKYENYSTGFFI 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,612,219 Number of Sequences: 219361 Number of extensions: 1478757 Number of successful extensions: 5267 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 5080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5257 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
