>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  369 bits (948), Expect = e-102
 Identities = 192/227 (84%), Positives = 195/227 (85%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIADAPTN
Sbjct: 198 QRYREAADMIKKGKMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTN 253

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNK ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD
Sbjct: 254 VQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 313

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF
Sbjct: 314 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 373

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 420

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  323 bits (829), Expect(2) = 4e-99
 Identities = 151/182 (82%), Positives = 172/182 (94%)
 Frame = +3

Query: 129 MVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
           MVNATLMNIAD PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 245 MVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 304

Query: 309 RDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIEN 488
           R+DRIGVCKGIF+TD V +E VV++VDTFPGQSIDFFGALRARVYDDEVR+WV  TG+EN
Sbjct: 305 REDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVEN 364

Query: 489 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 668
           I ++LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 365 IARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANED 424

Query: 669 AM 674
           AM
Sbjct: 425 AM 426



 Score = 58.2 bits (139), Expect(2) = 4e-99
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = +2

Query: 47  MCCLFINDLDAGAGRMGGTTQYTVNNQ 127
           M CLFINDLDAGAGRMGGTTQYTVNNQ
Sbjct: 218 MSCLFINDLDAGAGRMGGTTQYTVNNQ 244

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  339 bits (869), Expect = 5e-93
 Identities = 171/227 (75%), Positives = 187/227 (82%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA     G  C       +  +  G      T   T    MVNATLMNIADAPTN
Sbjct: 195 QRYREAADIINKGKMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTN 250

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD
Sbjct: 251 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 310

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV DE+VV++VDTFPGQSIDFFGALRARVYDDEVRKWVG  G+ENI KRLVNSR+GP TF
Sbjct: 311 NVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTF 370

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           +QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAM
Sbjct: 371 DQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAM 417

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  302 bits (774), Expect(2) = 2e-92
 Identities = 140/182 (76%), Positives = 167/182 (91%)
 Frame = +3

Query: 129 MVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
           MVNATLMNIAD PTNVQLPGMYNKE+N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 253 MVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 312

Query: 309 RDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIEN 488
           R+DRIGVCKGIF+TD V ++ +V++VD  PGQSIDFFGALRARVYDDEVRKW+   G+++
Sbjct: 313 REDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDS 372

Query: 489 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 668
           +GK+LVNS++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 373 VGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANED 432

Query: 669 AM 674
           A+
Sbjct: 433 AI 434



 Score = 57.0 bits (136), Expect(2) = 2e-92
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +2

Query: 47  MCCLFINDLDAGAGRMGGTTQYTVNNQ 127
           MC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 226 MCVLFINDLDAGAGRLGGTTQYTVNNQ 252

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  335 bits (858), Expect = 1e-91
 Identities = 168/227 (74%), Positives = 187/227 (82%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 198 QRYREAADIIKKGKMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 253

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TD
Sbjct: 254 VQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTD 313

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV DE +VKIVD+FPGQSIDFFGALRARVYDDEVRKWV  TG+ENIGKRLVNSR+GP  F
Sbjct: 314 NVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEF 373

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAM
Sbjct: 374 EQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAM 420

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  328 bits (841), Expect = 9e-90
 Identities = 164/227 (72%), Positives = 186/227 (81%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 208 QRYREAADIIKKGKMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 263

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD
Sbjct: 264 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 323

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV +E +VK+VD FPGQSIDFFGALRARVYDDEVRKWV   G++ IGK+LVNS++GP TF
Sbjct: 324 NVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTF 383

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+
Sbjct: 384 EQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAI 430

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  327 bits (839), Expect = 2e-89
 Identities = 164/225 (72%), Positives = 188/225 (83%), Gaps = 1/225 (0%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTI-LTLVRVGWAEPRSTPSTTXMVNATLMNIADAPTNVQ 179
           QRYR AA   + G  CA   + +     R+G     +      MVNATLMNIAD PTNVQ
Sbjct: 208 QRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTV--NNQMVNATLMNIADNPTNVQ 265

Query: 180 LPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNV 359
           LPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++DNV
Sbjct: 266 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNV 325

Query: 360 SDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQ 539
           + E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+   G+++IGK+LVNS++GP TFEQ
Sbjct: 326 AKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQ 385

Query: 540 PKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           PKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM
Sbjct: 386 PKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAM 430

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  327 bits (837), Expect = 3e-89
 Identities = 167/227 (73%), Positives = 187/227 (82%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 207 QRYREAAEIIRKGNMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 262

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD
Sbjct: 263 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 322

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV +E+VVKIVD+FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG++L+NSRDGP TF
Sbjct: 323 NVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTF 382

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+
Sbjct: 383 EQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAI 429

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  325 bits (834), Expect = 6e-89
 Identities = 167/227 (73%), Positives = 185/227 (81%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 212 QRYREAAEIIRKGNICCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 267

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD
Sbjct: 268 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 327

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV +E+V+KIVDTFPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TF
Sbjct: 328 NVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTF 387

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+
Sbjct: 388 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAI 434

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  323 bits (829), Expect = 2e-88
 Identities = 163/227 (71%), Positives = 184/227 (81%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 208 QRYREAADIIKKGKMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 263

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD
Sbjct: 264 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 323

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV+D+ +VK+VDTFPGQSIDFFGALRARVY DEVRKWV   G++ IGK+LVNS++GP +F
Sbjct: 324 NVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSF 383

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+
Sbjct: 384 EQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAI 430

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  319 bits (818), Expect = 4e-87
 Identities = 165/227 (72%), Positives = 180/227 (79%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 212 QRYREAAEIIRKGNMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 267

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TD
Sbjct: 268 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTD 327

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
           NV  E VVKIVD FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TF
Sbjct: 328 NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTF 387

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+
Sbjct: 388 EQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAI 434

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  315 bits (806), Expect = 1e-85
 Identities = 160/227 (70%), Positives = 181/227 (79%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA     G  CA      +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 206 QRYREAADLIAKGKMCAL----FINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 261

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNK++N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TD
Sbjct: 262 VQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTD 321

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
            V  E VVK+VD FPGQSIDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP  F
Sbjct: 322 KVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVF 381

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+
Sbjct: 382 EQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAI 428

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  314 bits (804), Expect = 2e-85
 Identities = 155/225 (68%), Positives = 184/225 (81%), Gaps = 1/225 (0%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTI-LTLVRVGWAEPRSTPSTTXMVNATLMNIADAPTNVQ 179
           QRYR AA     G  CA   + +     R+G     +      MVNATLMNIAD PTNVQ
Sbjct: 210 QRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTV--NNQMVNATLMNIADNPTNVQ 267

Query: 180 LPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNV 359
           LPGMYNKEEN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TD V
Sbjct: 268 LPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGV 327

Query: 360 SDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQ 539
            +E + K+VDTFPGQSIDFFGALRARVYDDEVRKW+   G++  GK+LVNS++GP TF+Q
Sbjct: 328 PEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQ 387

Query: 540 PKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           PKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+
Sbjct: 388 PKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAI 432

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  314 bits (804), Expect = 2e-85
 Identities = 161/227 (70%), Positives = 180/227 (79%), Gaps = 3/227 (1%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTILTLVRVGWAEPRSTPSTTX---MVNATLMNIADAPTN 173
           QRYR AA   + G  C       +  +  G      T   T    MVNATLMNIAD PTN
Sbjct: 208 QRYREAADLIKKGKMCCL----FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 263

Query: 174 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTD 353
           VQLPGMYNKEEN RVPI+ TGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD
Sbjct: 264 VQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 323

Query: 354 NVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTF 533
            + DE +V +VD FPGQSIDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP  F
Sbjct: 324 KIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVF 383

Query: 534 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 674
           EQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+
Sbjct: 384 EQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAI 430

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  285 bits (729), Expect = 9e-77
 Identities = 143/207 (69%), Positives = 164/207 (79%), Gaps = 1/207 (0%)
 Frame = +3

Query: 3   QRYRXAAXHDQXG*XCAASSSTI-LTLVRVGWAEPRSTPSTTXMVNATLMNIADAPTNVQ 179
           QRYR AA   + G  C    + +     R+G     +      MVNATLMNIAD PTNVQ
Sbjct: 205 QRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTV--NNQMVNATLMNIADNPTNVQ 262

Query: 180 LPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNV 359
           LPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTR+DRIG+C GIF+TD V
Sbjct: 263 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGV 322

Query: 360 SDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQ 539
             E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW    G+E IG+ LVNS++ P TF+Q
Sbjct: 323 PFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQ 382

Query: 540 PKMTVEKLLEYGHMLVQEQDNVKRVQL 620
           PKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 383 PKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  246 bits (629), Expect(2) = 3e-75
 Identities = 122/174 (70%), Positives = 139/174 (79%)
 Frame = +3

Query: 129 MVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
           MVNATLMNIAD PTNVQLPG+Y  EE PRVPIV TGNDFSTLYAPLIRDGRMEK+YW PT
Sbjct: 222 MVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPT 281

Query: 309 RDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIEN 488
           R+DRIGVC GIFQ DNV    V  +VDTFPGQSIDFFGALRARVYDD VR+W+  TG++ 
Sbjct: 282 REDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDK 341

Query: 489 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 650
           IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 342 IGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394



 Score = 55.5 bits (132), Expect(2) = 3e-75
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +2

Query: 47  MCCLFINDLDAGAGRMGGTTQYTVNNQ 127
           MC LFINDLDAGAGRMG TTQYTVNNQ
Sbjct: 195 MCSLFINDLDAGAGRMGDTTQYTVNNQ 221

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  206 bits (525), Expect(2) = 1e-59
 Identities = 96/170 (56%), Positives = 125/170 (73%)
 Frame = +3

Query: 123 TXMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWA 302
           T +VNATLMNIAD PT+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW 
Sbjct: 120 TQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWE 179

Query: 303 PTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGI 482
           P RD+++G+  GIF  D +S   V K+VD+FP QSIDFF ALR+R+YD+++R ++   G 
Sbjct: 180 PHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGY 239

Query: 483 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 632
           EN+  R+VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 240 ENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289



 Score = 43.5 bits (101), Expect(2) = 1e-59
 Identities = 21/30 (70%), Positives = 21/30 (70%)
 Frame = +2

Query: 38  RVXMCCLFINDLDAGAGRMGGTTQYTVNNQ 127
           R  MC L INDLDAGAGR    TQYTVN Q
Sbjct: 92  RGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  201 bits (512), Expect(2) = 4e-58
 Identities = 95/170 (55%), Positives = 123/170 (72%)
 Frame = +3

Query: 123 TXMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWA 302
           T +VNATLMNIAD PT+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW 
Sbjct: 120 TQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWE 179

Query: 303 PTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGI 482
           P RDD++G+  GIF  D +S   + ++VDTFP QSIDFF ALR+R+YD ++R ++   G 
Sbjct: 180 PNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGF 239

Query: 483 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 632
           E I  R+VNS + P  F++P  ++  L+E G++++ EQ  V   QL D Y
Sbjct: 240 ERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289



 Score = 43.5 bits (101), Expect(2) = 4e-58
 Identities = 21/30 (70%), Positives = 21/30 (70%)
 Frame = +2

Query: 38  RVXMCCLFINDLDAGAGRMGGTTQYTVNNQ 127
           R  MC L INDLDAGAGR    TQYTVN Q
Sbjct: 92  RGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 27/60 (45%), Positives = 30/60 (50%)
 Frame = +3

Query: 381 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 560
           +VDTFPGQSIDFFGAL                            R+GP TFEQP MT+EK
Sbjct: 1   LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32

>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 868

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
 Frame = -3

Query: 674  HRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVXXXXXXXXXXXLEGHGPVPRVHQPL 495
            HR L  + +   AHVG     +LDI  L DE   V            +  G   + +  +
Sbjct: 675  HRFLRRVWRLAQAHVGQGASGSLDIAALTDEQKAVRRSIHQAIKQASQDIGQNQKFNTAV 734

Query: 494  ANVLDSGRADPLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRL--VTDIVGLE--DTLAD 327
            A V        +  + V+  + Q+T +   L  EG++ +   L  +T  +  E    L  
Sbjct: 735  AQV--------MTLMNVLEKAPQATPQDRALLQEGLETVTLLLAPITPHISHELWTQLGH 786

Query: 326  TDTVVTGGSPVELLHTTITD 267
             + V+  G PV   H  + D
Sbjct: 787  NEPVIDAGWPVFDAHALVQD 806

>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 464 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 339
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44

>LEPA_HELPY (O25122) GTP-binding protein lepA|
          Length = 602

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +3

Query: 378 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 557
           KI+ T P  S DF   L+A +YD     ++G+         LV   DG +  EQ  + + 
Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232

Query: 558 KLLEYGHMLVQEQDNVKRV 614
              ++G + +   + +K++
Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251

>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 377 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 243
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 242 IV 237
           I+
Sbjct: 585 IL 586

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 628 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 524
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 377 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 243
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 242 IV 237
           I+
Sbjct: 585 IL 586

>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 377 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 243
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 242 IV 237
           I+
Sbjct: 585 IL 586

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 462 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 569
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

>SMOX3_SCHMA (Q26602) Homeobox protein SMOX-3 (Fragment)|
          Length = 288

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +3

Query: 84  RVGWAEPRSTPSTTXMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAP 263
           RV   +  +TPS++  +N   +    + TNVQL    N   NP++   V+ +D   L+  
Sbjct: 64  RVIQPDTTTTPSSSIPINMNNIEHNPSLTNVQLTSPDNSIYNPKLLSSVSLDDQDKLHKA 123

Query: 264 LIRDGRMEKFYWAPTRD 314
           +     M+K+    T D
Sbjct: 124 IDAYNTMDKYETNTTND 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,662,511
Number of Sequences: 219361
Number of extensions: 1905131
Number of successful extensions: 6578
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6557
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)