>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  375 bits (962), Expect = e-104
 Identities = 185/186 (99%), Positives = 185/186 (99%)
 Frame = +3

Query: 99  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL 278
           FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL
Sbjct: 5   FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL 64

Query: 279 AYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 458
           AYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA
Sbjct: 65  AYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 124

Query: 459 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 638
           PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL
Sbjct: 125 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 184

Query: 639 ESGNAG 656
           ESGNAG
Sbjct: 185 ESGNAG 190

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  338 bits (867), Expect = 8e-93
 Identities = 168/186 (90%), Positives = 175/186 (94%), Gaps = 2/186 (1%)
 Frame = +3

Query: 99  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD--KWK 272
           FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD  +WK
Sbjct: 5   FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQDRWK 63

Query: 273 GLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFY 452
           GLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTMGGFY
Sbjct: 64  GLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFY 123

Query: 453 IAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 632
           IAP+FMDKLVVH+SKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 124 IAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183

Query: 633 ELESGN 650
           ELESGN
Sbjct: 184 ELESGN 189

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  303 bits (776), Expect = 3e-82
 Identities = 154/192 (80%), Positives = 169/192 (88%), Gaps = 6/192 (3%)
 Frame = +3

Query: 99  FSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKRNTD- 263
           FSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE + TD 
Sbjct: 5   FSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDE 64

Query: 264 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 440
            +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+FDN M
Sbjct: 65  DRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMM 124

Query: 441 GGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIM 620
            GFYIA  FMDKLVVHLSKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI PIM
Sbjct: 125 DGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIM 184

Query: 621 MSAGELESGNAG 656
           MSAGELESGNAG
Sbjct: 185 MSAGELESGNAG 196

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  294 bits (753), Expect = 1e-79
 Identities = 150/188 (79%), Positives = 163/188 (86%), Gaps = 4/188 (2%)
 Frame = +3

Query: 99  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNTD--K 266
           FSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + TD  +
Sbjct: 5   FSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQTDADR 58

Query: 267 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 446
           WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDNTM G
Sbjct: 59  WKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDG 118

Query: 447 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 626
            YIAPAFMDKL+VHL+KNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 119 LYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 178

Query: 627 AGELESGN 650
           AGELESGN
Sbjct: 179 AGELESGN 186

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  258 bits (660), Expect = 8e-69
 Identities = 131/185 (70%), Positives = 149/185 (80%)
 Frame = +3

Query: 102 SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 281
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 282 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 461
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 462 AFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 641
           AFMDKLVVH++KNF+TLPNIK+PLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELE
Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELE 195

Query: 642 SGNAG 656
           SGNAG
Sbjct: 196 SGNAG 200

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  254 bits (650), Expect = 1e-67
 Identities = 128/195 (65%), Positives = 151/195 (77%), Gaps = 11/195 (5%)
 Frame = +3

Query: 105 STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE-NIDEK 251
           STVGA    P +  G   +  +  +  + G S K          +  F ++A E + D++
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQEISEDQQ 65

Query: 252 RNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 431
            + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ D
Sbjct: 66  TDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLD 125

Query: 432 NTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIN 611
           N M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 126 NNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIN 185

Query: 612 PIMMSAGELESGNAG 656
           PIMMSAGELESGNAG
Sbjct: 186 PIMMSAGELESGNAG 200

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  254 bits (650), Expect = 1e-67
 Identities = 128/195 (65%), Positives = 151/195 (77%), Gaps = 11/195 (5%)
 Frame = +3

Query: 105 STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE-NIDEK 251
           STVGA    P +  G   +  +  +  + G S K          +  F ++A E + D++
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQEISEDQQ 65

Query: 252 RNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 431
            + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ D
Sbjct: 66  TDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLD 125

Query: 432 NTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIN 611
           N M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 126 NNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIN 185

Query: 612 PIMMSAGELESGNAG 656
           PIMMSAGELESGNAG
Sbjct: 186 PIMMSAGELESGNAG 200

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  254 bits (649), Expect = 2e-67
 Identities = 129/187 (68%), Positives = 150/187 (80%), Gaps = 2/187 (1%)
 Frame = +3

Query: 102 SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 275
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 276 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 455
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 456 APAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 635
           APAFMDKLVVH++KNFMTLPN+K+PLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAGE
Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGE 193

Query: 636 LESGNAG 656
           LESGNAG
Sbjct: 194 LESGNAG 200

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  251 bits (642), Expect = 1e-66
 Identities = 132/200 (66%), Positives = 149/200 (74%), Gaps = 16/200 (8%)
 Frame = +3

Query: 105 STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 242
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 243 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 416
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 417 KYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFA 596
           +Y+ DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLILGIWGGKGQGKSFQCELVF 
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFR 184

Query: 597 KMGINPIMMSAGELESGNAG 656
           KMGINPIMMSAGELESGNAG
Sbjct: 185 KMGINPIMMSAGELESGNAG 204

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  249 bits (637), Expect = 4e-66
 Identities = 126/184 (68%), Positives = 151/184 (82%), Gaps = 3/184 (1%)
 Frame = +3

Query: 114 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 284
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 285 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 464
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 465 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 644
           F+DKLVVH++KNFMTLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELES
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 200

Query: 645 GNAG 656
           GNAG
Sbjct: 201 GNAG 204

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  248 bits (634), Expect = 9e-66
 Identities = 127/189 (67%), Positives = 146/189 (77%), Gaps = 4/189 (2%)
 Frame = +3

Query: 102 SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--DKW 269
           +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D+W
Sbjct: 19  NNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSDRW 75

Query: 270 KGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGF 449
           KGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ GF
Sbjct: 76  KGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGF 135

Query: 450 YIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 629
           YIAP+FMDKLVVH++KNF+ LPNIK+PLILG+WGGKGQGKSFQCELVF KMGINPIMMSA
Sbjct: 136 YIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSA 195

Query: 630 GELESGNAG 656
           GELESGNAG
Sbjct: 196 GELESGNAG 204

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  247 bits (631), Expect = 2e-65
 Identities = 131/184 (71%), Positives = 147/184 (79%), Gaps = 3/184 (1%)
 Frame = +3

Query: 114 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 284
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 285 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 464
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 465 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 644
           F+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 198

Query: 645 GNAG 656
           GNAG
Sbjct: 199 GNAG 202

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  246 bits (629), Expect = 3e-65
 Identities = 128/181 (70%), Positives = 141/181 (77%), Gaps = 1/181 (0%)
 Frame = +3

Query: 117 APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 293
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 294 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 473
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 474 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 653
           KLVVH++KNF+ LPNIKIPLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNA
Sbjct: 138 KLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNA 197

Query: 654 G 656
           G
Sbjct: 198 G 198

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  244 bits (624), Expect = 1e-64
 Identities = 125/198 (63%), Positives = 146/198 (73%), Gaps = 14/198 (7%)
 Frame = +3

Query: 105 STVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMAAENI 242
           ST+GA   T  N            FLG +LK      V+    +SK     F ++A ++ 
Sbjct: 6   STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVAEQDE 59

Query: 243 DEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 422
           +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S GLR Y
Sbjct: 60  EKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDY 119

Query: 423 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKM 602
            +DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLILG+WGGKGQGKSFQCELVFAKM
Sbjct: 120 SYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKM 179

Query: 603 GINPIMMSAGELESGNAG 656
           GINPIMMSAGELESGNAG
Sbjct: 180 GINPIMMSAGELESGNAG 197

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  244 bits (623), Expect = 2e-64
 Identities = 124/198 (62%), Positives = 145/198 (73%), Gaps = 14/198 (7%)
 Frame = +3

Query: 105 STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 242
           ST+GA +  P              T F GK LKK     V+       +NR   + A+ +
Sbjct: 6   STIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVVAQEV 62

Query: 243 DEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 422
           DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ L+ Y
Sbjct: 63  DETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTY 121

Query: 423 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKM 602
             DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLILG+WGGKGQGKSFQCELVF KM
Sbjct: 122 QLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKM 181

Query: 603 GINPIMMSAGELESGNAG 656
           GINPIMMSAGELESGNAG
Sbjct: 182 GINPIMMSAGELESGNAG 199

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  173 bits (438), Expect = 5e-43
 Identities = 85/139 (61%), Positives = 106/139 (76%), Gaps = 3/139 (2%)
 Frame = +3

Query: 249 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 419
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 420 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAK 599
             F+N   GFYI+PAF+DK+ +H++KNFM LP IK+PLILGIWGGKGQGK+FQC L + K
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKK 154

Query: 600 MGINPIMMSAGELESGNAG 656
           +GI PI+MSAGELESGNAG
Sbjct: 155 LGIAPIVMSAGELESGNAG 173

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 99.4 bits (246), Expect = 9e-21
 Identities = 43/70 (61%), Positives = 57/70 (81%)
 Frame = +3

Query: 447 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 626
           +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK+FQCEL F KMG+   ++S
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62

Query: 627 AGELESGNAG 656
            GELES +AG
Sbjct: 63  GGELESPDAG 72

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 43/70 (61%), Positives = 57/70 (81%)
 Frame = +3

Query: 447 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 626
           +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK+FQCEL F KMGI   ++S
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62

Query: 627 AGELESGNAG 656
            GELES +AG
Sbjct: 63  GGELESPDAG 72

>G6PI_PSEHT (Q3IKH4) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 548

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 396 YVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 575
           Y SQ +  YD    M   Y+    M+    H++    T+P   +P+I G+ G  GQ   +
Sbjct: 328 YTSQAILPYDQALHMLPAYLQQGEMESNGKHVNFAGETVPYTTVPIIWGMTGINGQHAFY 387

Query: 576 QC 581
           QC
Sbjct: 388 QC 389

>KCY_MOUSE (Q9DBP5) UMP-CMP kinase (EC 2.7.4.14) (Cytidylate kinase)|
           (Deoxycytidylate kinase) (Cytidine monophosphate kinase)
           (Uridine monophosphate/cytidine monophosphate kinase)
           (UMP/CMP kinase) (UMP/CMPK) (Uridine monophosphate
           kinase)
          Length = 196

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 638
           PL++ + GG G GK  QC  +  K G     +SAGEL
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYT--HLSAGEL 37

>KCY_HUMAN (P30085) UMP-CMP kinase (EC 2.7.4.14) (Cytidylate kinase)|
           (Deoxycytidylate kinase) (Cytidine monophosphate kinase)
           (Uridine monophosphate/cytidine monophosphate kinase)
           (UMP/CMP kinase) (UMP/CMPK) (Uridine monophosphate
           kinase)
          Length = 196

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 638
           PL++ + GG G GK  QC  +  K G     +SAGEL
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYT--HLSAGEL 37

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 452 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 276
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 117 APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 296
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 297 D--QQDITRGKGIVDSLFQAPTGDG 365
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -1

Query: 364 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 218
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>CELR2_RAT (Q9QYP2) Cadherin EGF LAG seven-pass G-type receptor 2 (Multiple|
            epidermal growth factor-like domains 3) (Fragment)
          Length = 2144

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 479  CCP--SLQKLHDPAQHQDPTHLGYLGRQGSRKIIPV*ACVRQDGHQPHHDECRRAGEWER 652
            C P  SL ++ DP   Q P   G +GRQ  R   P  A V  +G + ++D C RA E   
Sbjct: 1151 CYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPF-AEVTTNGCEVNYDSCPRAIEAGI 1209

Query: 653  W 655
            W
Sbjct: 1210 W 1210

>CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor 2 precursor|
            (Epidermal growth factor-like 2) (Multiple epidermal
            growth factor-like domains 3) (Flamingo 1)
          Length = 2923

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 479  CCP--SLQKLHDPAQHQDPTHLGYLGRQGSRKIIPV*ACVRQDGHQPHHDECRRAGEWER 652
            C P  SL ++ DP   Q P   G +GRQ  R   P  A V  +G + ++D C RA E   
Sbjct: 1926 CYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPF-AEVTTNGCEVNYDSCPRAIEAGI 1984

Query: 653  W 655
            W
Sbjct: 1985 W 1985

>CELR2_MOUSE (Q9R0M0) Cadherin EGF LAG seven-pass G-type receptor 2 precursor|
            (Flamingo 1) (mFmi1)
          Length = 2920

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 479  CCP--SLQKLHDPAQHQDPTHLGYLGRQGSRKIIPV*ACVRQDGHQPHHDECRRAGEWER 652
            C P  SL ++ DP   Q P   G +GRQ  R   P  A V  +G + ++D C RA E   
Sbjct: 1927 CYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPF-AEVTTNGCEVNYDSCPRAIEAGI 1985

Query: 653  W 655
            W
Sbjct: 1986 W 1986

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = -3

Query: 557 LASPDTQDEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAED 378
           L    T++E    +  G ++ G  +  L       +E   G  E + P+A  DVL+ AE 
Sbjct: 158 LVEVHTREELTAALAAGADIVGINNRDL-----GKLEVDLGTFEELAPEAPEDVLLVAES 212

Query: 377 GLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 273
           G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 213 GVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>ACCA_STRT2 (Q5M5R1) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 309 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 479
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRSVVTFINTAGAYPGVGAEERGQ 121

Query: 480 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 566
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>ACCA_STRR6 (Q8DR13) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 309 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 479
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 480 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 566
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>ACCA_STRPN (Q9FBB7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 309 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 479
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 480 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 566
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>COAE_CHLTE (Q8KD46) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A|
           kinase)
          Length = 208

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 522 KIPLILGIWGGKGQGKSFQCELVFAKMG 605
           ++PL++G+ GG G GKS  C ++ A+MG
Sbjct: 4   RLPLLVGVTGGIGSGKSTVCAML-AEMG 30

>VPG_BLRV (P19127) Putative genome-linked protein precursor (VPG) (16 kDa|
           protein) (ORF 2)
          Length = 142

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 607 MPILANTSSHWNDFP*PL-PPQIPKMSGILMLGRVMKFLERWTTSLS 470
           M I++ TSS W   P PL PPQ+P +   ++  R  +   + T S S
Sbjct: 49  MSIISRTSS-WRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTNSAS 94

>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -3

Query: 524 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 360
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233

Query: 359 ARGRLEERVHDALPSGDVLLVVG 291
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>ACCA_STRT1 (Q5M174) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 309 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 479
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 121

Query: 480 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 566
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>KADC2_ARATH (Q9FIJ7) Probable adenylate kinase 2, chloroplast precursor (EC|
           2.7.4.3) (ATP-AMP transphosphorylase)
          Length = 283

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 528 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 638
           PL + I G    GK  QCEL+  K G+  + +SAG+L
Sbjct: 64  PLKIMISGAPASGKGTQCELITHKYGL--VHISAGDL 98

>KAD1_CAEEL (Q20140) Probable adenylate kinase isoenzyme F38B2.4 (EC 2.7.4.3)|
           (ATP-AMP transphosphorylase)
          Length = 210

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 498 NFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 638
           N   L    +P+   I GG G GK  QC+ + AK G+    +S+G+L
Sbjct: 11  NLAPLKAAGVPIFF-IVGGPGSGKGTQCDKIVAKYGLT--HLSSGDL 54

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +3

Query: 183  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 362
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 363  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 521
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,281,038
Number of Sequences: 219361
Number of extensions: 1821516
Number of successful extensions: 5968
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 5750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5955
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)