ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalb21 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 150 bits (378), Expect = 2e-36 Identities = 77/117 (65%), Positives = 86/117 (73%), Gaps = 2/117 (1%) Frame = +1 Query: 37 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 210 A LPSLSR +SF V SG KKIKVDKPLG+GGG+ + +D++GRK KGVYQFVD Sbjct: 23 AVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVD 82 Query: 211 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 381 KYGANVDGYSPIY EEW+ +GD YAGGTTGLLIWAVT VYNTSALA Sbjct: 83 KYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 144 bits (363), Expect = 1e-34 Identities = 73/125 (58%), Positives = 84/125 (67%), Gaps = 2/125 (1%) Frame = +1 Query: 13 PXITSPXVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGK 186 P T ++ LPSL+R SSF VV SG KK+K DKP G+ G + + +DA+GRK Sbjct: 13 PTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKG 72 Query: 187 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYN 366 KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT VYN Sbjct: 73 KGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYN 132 Query: 367 TSALA 381 TSALA Sbjct: 133 TSALA 137
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 143 bits (360), Expect = 3e-34 Identities = 73/125 (58%), Positives = 83/125 (66%), Gaps = 2/125 (1%) Frame = +1 Query: 13 PXITSPXVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGK 186 P T + LPSL+R SSF VV SG KK+K DKP G+ G + + +DA+GRK Sbjct: 13 PTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKG 72 Query: 187 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYN 366 KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT VYN Sbjct: 73 KGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYN 132 Query: 367 TSALA 381 TSALA Sbjct: 133 TSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 138 bits (348), Expect = 7e-33 Identities = 71/127 (55%), Positives = 84/127 (66%), Gaps = 2/127 (1%) Frame = +1 Query: 7 QPPXITSPXVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKV 180 +P + A LPSL+R SSF V SG KK+K DKP G+ G +++ +DA+GRK Sbjct: 9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQ 68 Query: 181 GKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXV 360 KGVYQFVDKYGANVDGYSPIY ++WS SGD Y GGTTGL IWAVT V Sbjct: 69 KGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLV 128 Query: 361 YNTSALA 381 +NTSALA Sbjct: 129 FNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 134 bits (338), Expect = 1e-31 Identities = 70/127 (55%), Positives = 80/127 (62%), Gaps = 2/127 (1%) Frame = +1 Query: 7 QPPXITSPXVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKV 180 +P T A LPSL+R SF +V SG KKIK DKP G+ G + + +DA+GRK Sbjct: 13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKG 72 Query: 181 GKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXV 360 GVY++VDKYGANVDGYSPIY EWS SGD Y GG TGL IWAVT V Sbjct: 73 KGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLV 132 Query: 361 YNTSALA 381 YNTSALA Sbjct: 133 YNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 133 bits (335), Expect = 2e-31 Identities = 71/128 (55%), Positives = 83/128 (64%), Gaps = 3/128 (2%) Frame = +1 Query: 7 QPPXITSPXVAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRK 177 +P T ++ LPSL+R SSF +V SG KKIK DKP G+ G + + +DA+GRK Sbjct: 13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRK 72 Query: 178 VGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXX 357 GVY+FVDKYGANVDGYSPIY +EWS SGD Y GG TGL IWAVT Sbjct: 73 GKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALL 132 Query: 358 VYNTSALA 381 VYNTSALA Sbjct: 133 VYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 120 bits (301), Expect = 2e-27 Identities = 63/118 (53%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = +1 Query: 34 VAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVD--IDANGRKVGKKGVYQFV 207 V P++ PSL +V KK++ +P G GGG+ +DA+GR KGVYQF Sbjct: 27 VRPSARPSL-------VIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFA 79 Query: 208 DKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 381 DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT VY+TSALA Sbjct: 80 DKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = +1 Query: 94 SGGKKIKVDKPLGLGGGLTVDIDA 165 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +1 Query: 49 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRKVGKKGV 195 L ++ R AVVC GG + K D L L G+T DI G KV + V Sbjct: 354 LSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMT-DILTVGSKVDSESV 401
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Frame = -2 Query: 233 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPXPRGLSTLIFLPPLQTT 84 P T P +T TP PT P+ + +TV P P P G T P TT Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -2 Query: 233 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPXPRGLSTLIFLPPLQTT 84 P+T+ + N P PT P+ + +TV P P P G T P TT Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +1 Query: 88 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 255 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 29.6 bits (65), Expect = 4.6 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 8/50 (16%) Frame = -2 Query: 146 KPPPXPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATXGEV 21 +PPP PR S PP Q TT PRR RD R G G+V Sbjct: 53 RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -2 Query: 191 PFLPTFLPLASMSTVKPPPX-PRGLSTLIFLPPLQTTAKEEPRRER 57 P+LP P S + PPP P G T I PL++ AK + ++ Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 94 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 243 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 94 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 243 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 170 PLASMSTVKPPPXPRGLSTLIFLPPLQTTAKEEPRRERDG 51 P+ T KPP P G + PP Q T E+P E+ G Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,669,946 Number of Sequences: 219361 Number of extensions: 774341 Number of successful extensions: 3107 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3097 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
