ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalb18 |
|---|---|
| Clone Library Name | barley_pub |
>NCAP_IBVK (P12648) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.5 bits (62), Expect(2) = 0.31 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -3 Query: 266 TSRHQTLTRTVAIHCFLPTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 +SR T T + A P E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 343 SSRPATRTSSPAPRQPRPKKEKKTKKQDDEVDKALTSDEERNNAQLEFDDEPKVI 397 Score = 24.3 bits (51), Expect(2) = 0.31 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D PK SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPKPKSRSSSR 345
>NCAP_IBVDE (Q9J4B0) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 27.3 bits (59), Expect(2) = 1.4 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = -3 Query: 266 TSRHQTLTRTVAIHCFLPTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 +SR T T + A+ E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 343 SSRPATRTSSPALRQQPQKKEKKPKKQDDEVDKALTSDEERNNAQLEFDDEPKVI 397 Score = 23.1 bits (48), Expect(2) = 1.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D P+ SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPRPKSRSSSR 345
>SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 901 Score = 31.6 bits (70), Expect = 1.6 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Frame = +3 Query: 129 VPSAIAFLLRGES-DIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRSVPLDGNNE 305 +P F LR + DI+ +L HT+ V CY + + + + LD N E Sbjct: 520 LPELYPFDLRPQGHDIISFWLFHTV--------VKCYEHTGEVPFENVMINGMVLDENRE 571 Query: 306 AFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNL 482 A + S + PVD+ +W A G GD + D++ G RL+ L Sbjct: 572 AMSKSKGNVIPPSEVLEEFPVDATRYW-----AAGTSIGDDFPYKEGDLEAGERLLQKL 625
>ILVD_CHLTE (Q8KER4) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 560 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 254 QTLTRTVAIHCFLPTLELQGVQQEVLHDVALTSEEERDGRRHEIPD 117 Q LTRT ++ F L + G +LH +A+ SE E D E+ D Sbjct: 250 QILTRTSMLNAFALDLAMGGSTNTILHTLAIASEAELDFDFSELND 295
>NCAP_IBVVI (Q96598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 26.6 bits (57), Expect(2) = 2.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 215 PTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 P E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 360 PKKEKKPKKQDDEVDKALTSDEERNNAQLEFDDEPKVI 397 Score = 23.1 bits (48), Expect(2) = 2.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D P+ SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPRPKSRSSSR 345
>NCAP_IBVH5 (Q98Y32) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 26.6 bits (57), Expect(2) = 2.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 215 PTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 P E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 360 PKKEKKPKKQDDEVDKALTSDEERNNAQLEFDDEPKVI 397 Score = 23.1 bits (48), Expect(2) = 2.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D P+ SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPRPKSRSSSR 345
>NCAP_IBVAR (Q64960) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 26.6 bits (57), Expect(2) = 2.3 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = -3 Query: 266 TSRHQTLTRTVAIHCFLPTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 +SR T T + A P E + +Q+ D ALTS EER+ + E +E ++ Sbjct: 343 SSRPATRTSSPAPRQQRPKKEKKPKKQDDEVDKALTSNEERNNAQLEFDEEPKVI 397 Score = 23.1 bits (48), Expect(2) = 2.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D P+ SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPRPKSRSSSR 345
>NCAP_IBVBU (P69598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 25.4 bits (54), Expect(2) = 2.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 215 PTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 P E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 360 PKKEKKLKKQDDEADKALTSDEERNNAQLEFYDEPKVI 397 Score = 24.3 bits (51), Expect(2) = 2.3 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D PK SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPKPKSRSSSR 345
>NCAP_IBVBC (P69597) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 25.4 bits (54), Expect(2) = 2.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 215 PTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 P E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 360 PKKEKKLKKQDDEADKALTSDEERNNAQLEFYDEPKVI 397 Score = 24.3 bits (51), Expect(2) = 2.3 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D PK SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPKPKSRSSSR 345
>NCAP_IBVB (P69596) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 25.4 bits (54), Expect(2) = 2.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 215 PTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 P E + +Q+ D ALTS+EER+ + E DE ++ Sbjct: 360 PKKEKKLKKQDDEADKALTSDEERNNAQLEFYDEPKVI 397 Score = 24.3 bits (51), Expect(2) = 2.3 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D PK SR+SS+ Sbjct: 318 KICDQCVDGVG-TRPKDDEPKPKSRSSSR 345
>HELA_LEGPN (Q48815) Protein helA| Length = 1052 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 111 VFIRDFVPSAIAFLLRGESDIVKNFLLHTLQL 206 +F FVP+A+A LRG +N+L+H L L Sbjct: 491 LFALTFVPAAVAIFLRGHLQEKENWLVHYLSL 522
>FINC_XENLA (Q91740) Fibronectin precursor (FN)| Length = 2481 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 234 YSPGQGLMPASFKVRSVPLDGNNEAFEEVLDPDFGESAIGRVAP 365 +SP G + ++V SVP G E F +V+ PD E I + P Sbjct: 1653 WSPPPGPV-TGYRVTSVPKSGQGETFSQVISPDQTEVTIVGLQP 1695
>NCAP_CVTMI (Q9PZ50) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 23.9 bits (50), Expect(2) = 8.0 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = -3 Query: 266 TSRHQTLTRTVAIHCFLPTLELQGVQQEVLHDVALTSEEERDGRRHEIPDEDLIV 102 +SR T T + A E + +Q+ D ALTS EER + E DE ++ Sbjct: 343 SSRPATRTSSPAPRQQRSKKEKKPKKQDDEVDKALTSAEERTNAQLEFDDEPKVI 397 Score = 23.9 bits (50), Expect(2) = 8.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 394 RIIHQSPESTGATRPMADSPKSGSRTSSK 308 +I Q + G TRP D PK SR+SS+ Sbjct: 318 KICDQCIDGVG-TRPKDDEPKPKSRSSSR 345 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,136,414 Number of Sequences: 219361 Number of extensions: 1784117 Number of successful extensions: 4648 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4647 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
