ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalb17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chr... 46 0.13
2gb|AY029558.1| Zea mays putative methyl-binding domain protein M... 44 0.53
3gb|BT018441.1| Zea mays clone EL01N0372H11.d mRNA sequence 44 0.53
4gb|AC146111.3| Pan troglodytes BAC clone RP43-38O16 from 7, comp... 42 2.1
5emb|X91855.1|PKMSP1GEN P.knowlesi MSP-1 gene 42 2.1
6ref|XM_307789.2| Anopheles gambiae str. PEST ENSANGP00000012955 ... 42 2.1
7dbj|AP003466.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.1
8gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosom... 40 8.3
9ref|XM_475121.1| Oryza sativa (japonica cultivar-group), predic... 40 8.3
10gb|AC095022.4| Sus scrofa clone RP44-374C1, complete sequence 40 8.3
11emb|CR733881.2|CNS0GT1K Tetraodon nigroviridis full-length cDNA 40 8.3
12emb|CR720476.2|CNS0GIV6 Tetraodon nigroviridis full-length cDNA 40 8.3
13emb|CR717798.2|CNS0GGSS Tetraodon nigroviridis full-length cDNA 40 8.3
14emb|CR716786.2|CNS0GG0R Tetraodon nigroviridis full-length cDNA 40 8.3
15emb|CR706085.2|CNS0G7RL Tetraodon nigroviridis full-length cDNA 40 8.3
16emb|CR706333.2|CNS0G7YH Tetraodon nigroviridis full-length cDNA 40 8.3
17emb|CR702087.2|CNS0G4OJ Tetraodon nigroviridis full-length cDNA 40 8.3
18emb|CR698551.2|CNS0G1YB Tetraodon nigroviridis full-length cDNA 40 8.3
19emb|CR688935.2|CNS0FUJ7 Tetraodon nigroviridis full-length cDNA 40 8.3
20emb|CR686526.2|CNS0FSOA Tetraodon nigroviridis full-length cDNA 40 8.3
21emb|CR673871.2|CNS0FIXH Tetraodon nigroviridis full-length cDNA 40 8.3
22emb|CR632767.2|CNS0EN7P Tetraodon nigroviridis full-length cDNA 40 8.3
23emb|CR634094.2|CNS0EO8K Tetraodon nigroviridis full-length cDNA 40 8.3
24emb|CR633412.2|CNS0ENPM Tetraodon nigroviridis full-length cDNA 40 8.3
25emb|CR632968.2|CNS0ENDA Tetraodon nigroviridis full-length cDNA 40 8.3
26gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete ... 40 8.3
27gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume ... 40 8.3
28emb|AJ277892.2|HSA277892 Homo sapiens partial TTN gene for titin 40 8.3
29gb|BC070113.1| Homo sapiens cDNA clone IMAGE:5268363 40 8.3
30gb|BC041357.1| Homo sapiens cDNA clone IMAGE:5272988 40 8.3
31gb|AC137553.45| Medicago truncatula clone mth2-20p12, complete s... 40 8.3
32dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 8.3
33dbj|AK132167.1| Mus musculus 17 days embryo head cDNA, RIKEN ful... 40 8.3
34dbj|AK146889.1| Mus musculus 16 days embryo heart cDNA, RIKEN fu... 40 8.3
35gb|AF133268.1|AF133268 Manduca sexta glutathione S-transferase G... 40 8.3
36gb|AC010680.10| Homo sapiens BAC clone RP11-171I2 from 2, comple... 40 8.3
37ref|NM_001033208.1| Mus musculus expressed sequence AA407270 (AA... 40 8.3
38gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete... 40 8.3
39gb|AC149887.2| Xenopus tropicalis clone ISB-146F11, complete seq... 40 8.3
40gb|AC151340.2| Xenopus tropicalis clone ISB-362A3, complete sequ... 40 8.3
41emb|AL929259.13| Mouse DNA sequence from clone RP23-141E12 on ch... 40 8.3
42emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chr... 40 8.3 
>emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chromosome Xq21.33-22.3,
            complete sequence
          Length = 67911

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 30   aaatgatgtggagatgaaagttg 52
            |||||||||||||||||||||||
Sbjct: 9473 aaatgatgtggagatgaaagttg 9451
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>gb|AY029558.1| Zea mays putative methyl-binding domain protein MBD105 mRNA,
           complete cds
          Length = 1777

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 293 agaaggaagatgtcaagccagctgag 318
           ||||| ||||||||||||||||||||
Sbjct: 674 agaagaaagatgtcaagccagctgag 699
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>gb|BT018441.1| Zea mays clone EL01N0372H11.d mRNA sequence
          Length = 1502

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 293 agaaggaagatgtcaagccagctgag 318
           ||||| ||||||||||||||||||||
Sbjct: 290 agaagaaagatgtcaagccagctgag 315
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>gb|AC146111.3| Pan troglodytes BAC clone RP43-38O16 from 7, complete sequence
          Length = 158242

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 538   ccagcaatggaagacaagaaggaag 562
             |||||| ||||||||||||||||||
Sbjct: 93081 ccagcactggaagacaagaaggaag 93057
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>emb|X91855.1|PKMSP1GEN P.knowlesi MSP-1 gene
          Length = 981

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 542 caatggaagacaagaaggaag 562
           |||||||||||||||||||||
Sbjct: 893 caatggaagacaagaaggaag 913
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>ref|XM_307789.2| Anopheles gambiae str. PEST ENSANGP00000012955
           (ENSANGG00000010466), partial mRNA
          Length = 678

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 522 tgatgccgttccgtctccagc 542
           |||||||||||||||||||||
Sbjct: 278 tgatgccgttccgtctccagc 258
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>dbj|AP003466.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1047C11
          Length = 154371

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 443   aagatatcaagccagctgggg 463
             |||||||||||||||||||||
Sbjct: 57519 aagatatcaagccagctgggg 57539



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   aagatatcaagccagctgggg 415
             |||||||||||||||||||||
Sbjct: 57519 aagatatcaagccagctgggg 57539
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>gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosome 14, complete sequence
          Length = 143851

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    cccgcagaacacaaggaaga 134
              ||||||||||||||||||||
Sbjct: 138798 cccgcagaacacaaggaaga 138817
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>ref|XM_475121.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1884

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 acaaggaagatgtcaaacta 144
           ||||||||||||||||||||
Sbjct: 269 acaaggaagatgtcaaacta 288
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>gb|AC095022.4| Sus scrofa clone RP44-374C1, complete sequence
          Length = 61497

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   tccggcaccagtggttgaag 493
             ||||||||||||||||||||
Sbjct: 13311 tccggcaccagtggttgaag 13330
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>emb|CR733881.2|CNS0GT1K Tetraodon nigroviridis full-length cDNA
          Length = 568

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 431 gttgatgaagatgtgaaagctgct 408
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>emb|CR720476.2|CNS0GIV6 Tetraodon nigroviridis full-length cDNA
          Length = 577

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 457 gttgatgaagatgtgaaagctgct 434
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>emb|CR717798.2|CNS0GGSS Tetraodon nigroviridis full-length cDNA
          Length = 553

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 416 gttgatgaagatgtgaaagctgct 393
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>emb|CR716786.2|CNS0GG0R Tetraodon nigroviridis full-length cDNA
          Length = 526

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366
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>emb|CR706085.2|CNS0G7RL Tetraodon nigroviridis full-length cDNA
          Length = 668

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 424 gttgatgaagatgtgaaagctgct 401
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>emb|CR706333.2|CNS0G7YH Tetraodon nigroviridis full-length cDNA
          Length = 677

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 424 gttgatgaagacgtgaaagctgct 401
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>emb|CR702087.2|CNS0G4OJ Tetraodon nigroviridis full-length cDNA
          Length = 559

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 422 gttgatgaagatgtgaaagctgct 399
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>emb|CR698551.2|CNS0G1YB Tetraodon nigroviridis full-length cDNA
          Length = 558

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 425 gttgatgaagatgtgaaagctgct 402
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>emb|CR688935.2|CNS0FUJ7 Tetraodon nigroviridis full-length cDNA
          Length = 580

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 443 gttgatgaagatgtgaaagctgct 420
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>emb|CR686526.2|CNS0FSOA Tetraodon nigroviridis full-length cDNA
          Length = 525

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 392 gttgatgaagatgtgaaagctgct 369
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>emb|CR673871.2|CNS0FIXH Tetraodon nigroviridis full-length cDNA
          Length = 595

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 462 gttgatgaagatgtgaaagctgct 439
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>emb|CR632767.2|CNS0EN7P Tetraodon nigroviridis full-length cDNA
          Length = 522

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366
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>emb|CR634094.2|CNS0EO8K Tetraodon nigroviridis full-length cDNA
          Length = 564

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 429 gttgatgaagatgtgaaagctgct 406
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>emb|CR633412.2|CNS0ENPM Tetraodon nigroviridis full-length cDNA
          Length = 522

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366
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>emb|CR632968.2|CNS0ENDA Tetraodon nigroviridis full-length cDNA
          Length = 522

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  gttgatgaagaggtgaaagctgct 72
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366
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>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    acaaatgatgtggagatgaa 47
             ||||||||||||||||||||
Sbjct: 64052 acaaatgatgtggagatgaa 64071
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>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1)
             gene, complete cds
          Length = 169976

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 540   agcaatggaagacaagaaggaaga 563
             |||||||||||| |||||||||||
Sbjct: 77874 agcaatggaagaaaagaaggaaga 77851
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>emb|AJ277892.2|HSA277892 Homo sapiens partial TTN gene for titin
          Length = 294540

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    tgaagacaaggaagatgtca 508
              ||||||||||||||||||||
Sbjct: 235891 tgaagacaaggaagatgtca 235872
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>gb|BC070113.1| Homo sapiens cDNA clone IMAGE:5268363
          Length = 4610

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 489  tgaagacaaggaagatgtca 508
            ||||||||||||||||||||
Sbjct: 2784 tgaagacaaggaagatgtca 2803
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>gb|BC041357.1| Homo sapiens cDNA clone IMAGE:5272988
          Length = 4615

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 489  tgaagacaaggaagatgtca 508
            ||||||||||||||||||||
Sbjct: 2789 tgaagacaaggaagatgtca 2808
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>gb|AC137553.45| Medicago truncatula clone mth2-20p12, complete sequence
          Length = 134249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    acaaatgatgtggagatgaa 47
             ||||||||||||||||||||
Sbjct: 30088 acaaatgatgtggagatgaa 30107
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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 485    tggttgaagacaaggaagat 504
              ||||||||||||||||||||
Sbjct: 399716 tggttgaagacaaggaagat 399697
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>dbj|AK132167.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched
            library, clone:3321401J18 product:hypothetical protein,
            full insert sequence
          Length = 5500

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 513  agctgaagctgatgccgttccgtctcca 540
            ||||| ||||||||||||||| ||||||
Sbjct: 4265 agctggagctgatgccgttccttctcca 4238
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>dbj|AK146889.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:I920069H02 product:hypothetical
            tRNA-binding arm containing protein, full insert sequence
          Length = 2284

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 513  agctgaagctgatgccgttccgtctcca 540
            ||||| ||||||||||||||| ||||||
Sbjct: 1050 agctggagctgatgccgttccttctcca 1023
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>gb|AF133268.1|AF133268 Manduca sexta glutathione S-transferase GST-msolf1 mRNA, complete
           cds
          Length = 805

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 557 aggaagatgttaagccatcc 576
           ||||||||||||||||||||
Sbjct: 509 aggaagatgttaagccatcc 490
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>gb|AC010680.10| Homo sapiens BAC clone RP11-171I2 from 2, complete sequence
          Length = 177476

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   tgaagacaaggaagatgtca 508
             ||||||||||||||||||||
Sbjct: 18548 tgaagacaaggaagatgtca 18567
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>ref|NM_001033208.1| Mus musculus expressed sequence AA407270 (AA407270), mRNA
          Length = 2284

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 513  agctgaagctgatgccgttccgtctcca 540
            ||||| ||||||||||||||| ||||||
Sbjct: 1050 agctggagctgatgccgttccttctcca 1023
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>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence
          Length = 168863

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 283   gtggaagacaagaaggaagatgtcaagc 310
             ||||||| |||||||||||||| |||||
Sbjct: 48404 gtggaagtcaagaaggaagatgccaagc 48431
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>gb|AC149887.2| Xenopus tropicalis clone ISB-146F11, complete sequence
          Length = 91514

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   cagcaatggaagacaagaag 558
             ||||||||||||||||||||
Sbjct: 67508 cagcaatggaagacaagaag 67489
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>gb|AC151340.2| Xenopus tropicalis clone ISB-362A3, complete sequence
          Length = 101442

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   cagcaatggaagacaagaag 558
             ||||||||||||||||||||
Sbjct: 19449 cagcaatggaagacaagaag 19430
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>emb|AL929259.13| Mouse DNA sequence from clone RP23-141E12 on chromosome 2, complete
             sequence
          Length = 153645

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   aagacaagaaggaagatgtt 567
             ||||||||||||||||||||
Sbjct: 72964 aagacaagaaggaagatgtt 72945
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>emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chromosome 14, complete
              sequence
          Length = 181740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    cccgcagaacacaaggaaga 134
              ||||||||||||||||||||
Sbjct: 152618 cccgcagaacacaaggaaga 152599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,641,350
Number of Sequences: 3902068
Number of extensions: 5641350
Number of successful extensions: 113410
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113296
Number of HSP's gapped (non-prelim): 114
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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