>RL38_ARATH (O22860) 60S ribosomal protein L38|
          Length = 69

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 44/52 (84%), Positives = 50/52 (96%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDARSV+IKR+KD VKFKVRCSRYLYTLCVFD +KA+KLKQSLPPGLSVQ++
Sbjct: 18  KDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69

>RL38_LYCES (P46291) 60S ribosomal protein L38|
          Length = 69

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 40/52 (76%), Positives = 48/52 (92%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDAR+V+IK+ KD VKFKVRCS+YLYTLCV D +KA+KLKQSLPPGLSVQ++
Sbjct: 18  KDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69

>RL38_RAT (P63174) 60S ribosomal protein L38|
          Length = 69

 Score = 81.6 bits (200), Expect = 7e-16
 Identities = 38/52 (73%), Positives = 46/52 (88%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLPPGL+V+E+
Sbjct: 17  KDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 68

>RL38_HUMAN (P63173) 60S ribosomal protein L38|
          Length = 69

 Score = 81.6 bits (200), Expect = 7e-16
 Identities = 38/52 (73%), Positives = 46/52 (88%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLPPGL+V+E+
Sbjct: 17  KDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 68

>RL38_MACFA (Q8HXB9) Ribosomal protein L38|
          Length = 69

 Score = 81.3 bits (199), Expect = 9e-16
 Identities = 38/51 (74%), Positives = 45/51 (88%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQE 179
           KDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLPPGL+V+E
Sbjct: 17  KDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 67

>RL38_MOUSE (Q9JJI8) 60S ribosomal protein L38|
          Length = 69

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 37/52 (71%), Positives = 46/52 (88%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLPPGL+V+++
Sbjct: 17  KDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 68

>RL38_CAEEL (O17570) 60S ribosomal protein L38|
          Length = 70

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 34/52 (65%), Positives = 42/52 (80%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA+SV+IK+  +  KFKVRC+ YLYTL V D DKA KLKQSLPPG+ V+E+
Sbjct: 18  KDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKEL 69

>RL38_OSTOS (O61570) 60S ribosomal protein L38|
          Length = 70

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 35/52 (67%), Positives = 41/52 (78%)
 Frame = +3

Query: 27  KDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA+ V+IK+    VKFKVRCSRYL+TL V D DKA KLKQSLPPG+ V E+
Sbjct: 18  KDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSLPPGIQVIEL 69

>RL38B_SCHPO (Q09900) 60S ribosomal protein L38-2|
          Length = 74

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 35/52 (67%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  DARSVRIKRTKD-AVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           DA S R+K+ ++ AVKFK+RCSRYLYTL V DA KA KL+QSLPP L+V EV
Sbjct: 19  DATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEV 70

>RL38A_SCHPO (Q9USR7) 60S ribosomal protein L38-1|
          Length = 74

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 36/53 (67%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
 Frame = +3

Query: 27  KDARSVRIKR-TKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA S RIK+ T   VKFK+RCS+YLYTL V DA KA KL+QSLPP L+V EV
Sbjct: 18  KDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70

>RL38_NEUCR (Q9C2B9) 60S ribosomal protein L38|
          Length = 80

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = +3

Query: 27  KDARSVRIKRTK--DAVKFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSVQEV 182
           KDA + RIK+ K    +KFKVRC +YLYTL + D+DKA KLK SLPP L++ +V
Sbjct: 18  KDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKASLPPSLTIADV 71

>RL38_YEAST (P49167) 60S ribosomal protein L38|
          Length = 78

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = +3

Query: 15  RRAGKDARSVRIKRTKDAV-------KFKVRCSRYLYTLCVFDADKANKLKQSLPPGLSV 173
           RRA     +V+I +  +         KFKVR S  LYTL + DA KA KL QSLPP L V
Sbjct: 16  RRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLIQSLPPTLKV 75

Query: 174 QEV 182
             +
Sbjct: 76  NRL 78

>RL38_AERPE (Q9YFR9) 50S ribosomal protein L38E|
          Length = 67

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +3

Query: 45  RIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQ 149
           R+KR KD VK K R  RYLYTL V    +A  L+Q
Sbjct: 22  RVKRGKDVVKIKARTKRYLYTLKVPPEKEAEVLEQ 56

>CSD2_ECOLI (P53513) Outer membrane usher protein cssD precursor (CS6 fimbria|
           usher protein)
          Length = 802

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 354 HKNPHRFNHIAPNITFQSWNIKTLLNGGKQGEPANSY*RTMDRTFPLLEKA 202
           +KN + +  ++PNI + SW ++ L    +  +      +T +R +  LEK+
Sbjct: 172 NKNRYDYISVSPNINYFSWRLRNLFEFNQNNDE-----KTWERNYTYLEKS 217

>LE756_CAEEL (Q11184) Protein let-756 (Lethal protein 756)|
          Length = 425

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 20  RRXGRAVGADQEDQGRRQVQGSLLQVPLHALRLRCRQGQQAQAVPPTRFERP 175
           RR  R    +Q  + RRQ   SL +     LR R +Q QQ QA   TR+ RP
Sbjct: 290 RREDRLRKEEQIREARRQELKSLRE---EELRRRYQQQQQQQASTQTRYNRP 338

>TLR9_BOVIN (Q5I2M5) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1029

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 150 SLPPGLSVQEV*ASSQSMPFLVAGMF 227
           SLPPG+ +Q++  SS S+ F++ G F
Sbjct: 694 SLPPGIRLQKLDVSSNSIGFVIPGFF 719

>IPNS_EMENI (P05326) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 331

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 116 DAERVEVPGAANLELDGVLGPLDPHRP 36
           +AER  +P   NL  D V+ P DP  P
Sbjct: 276 NAERQSLPFFVNLGYDSVIDPFDPREP 302

>PRGR_RAT (Q63449) Progesterone receptor (PR)|
          Length = 923

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 104 VEVPGAANLELDGVLGPLDPHRPRVLXGAPSAG 6
           VEV     LE +G  GPL   +PR L G  S G
Sbjct: 219 VEVEEDGGLETEGSAGPLLKSKPRALEGMCSGG 251

>NIFS_FRASE (Q9Z5X5) Cysteine desulfurase (EC 2.8.1.7) (Nitrogenase|
           metalloclusters biosynthesis protein nifS)
          Length = 419

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 89  AANLELDGVLGPLDPHRPRVLXGA 18
           AANL + GVL   +P R R+L GA
Sbjct: 72  AANLAIGGVLATAEPGRRRILVGA 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,785,877
Number of Sequences: 219361
Number of extensions: 925849
Number of successful extensions: 2035
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)