ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baala18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1134 bits (572), Expect = 0.0 Identities = 597/603 (99%), Gaps = 2/603 (0%) Strand = Plus / Plus Query: 1 cagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagnanatgg 60 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| Sbjct: 88 cagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-agatgg 145 Query: 61 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 205 Query: 121 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 265 Query: 181 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 325 Query: 241 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 300 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 agggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 385 Query: 301 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 445 Query: 361 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 505 Query: 421 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 565 Query: 481 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 625 Query: 541 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccg 685 Query: 601 gag 603 ||| Sbjct: 686 gag 688
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1017 bits (513), Expect = 0.0 Identities = 582/603 (96%), Gaps = 3/603 (0%) Strand = Plus / Plus Query: 1 cagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagnanatgg 60 ||||||||| ||||||||||||| ||||||||||||||| |||||||||||| | |||| Sbjct: 9 cagcacagc--cgcgcatccaccgctgctagcaaggtcgagcaagcagcacag-agatgg 65 Query: 61 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 120 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 66 ctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcctcggga 125 Query: 121 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 185 Query: 181 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 240 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 186 acaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtgga 245 Query: 241 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 305 Query: 301 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 360 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 306 tggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcagctcat 365 Query: 361 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 420 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 366 acgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggaggcttct 425 Query: 421 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 480 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 426 acatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttcatgaccc 485 Query: 481 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 545 Query: 541 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccg 600 | ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct: 546 ccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccg 605 Query: 601 gag 603 ||| Sbjct: 606 gag 608
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 835 bits (421), Expect = 0.0 Identities = 430/433 (99%) Strand = Plus / Plus Query: 171 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 420 Query: 591 atgagtgccggag 603 ||||||||||||| Sbjct: 421 atgagtgccggag 433
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 92 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 152 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 212 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 272 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 331 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 332 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 392 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 452 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 494 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 392 bits (198), Expect = e-106 Identities = 324/366 (88%) Strand = Plus / Plus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 355 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 356 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 415 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 416 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 475 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 476 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 535 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 536 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 595 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 3298 Query: 596 tgccgg 601 ||||| Sbjct: 3299 cgccgg 3304 Score = 174 bits (88), Expect = 2e-40 Identities = 88/88 (100%) Strand = Plus / Plus Query: 493 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 553 agcttgtgttcgccaagatgggcatcaa 580 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157 Score = 147 bits (74), Expect = 5e-32 Identities = 90/93 (96%), Gaps = 2/93 (2%) Strand = Plus / Plus Query: 1 cagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagnanatgg 60 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| Sbjct: 5308 cagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-agatgg 5365 Query: 61 ctgctgccttctcctccaccgtcggggctccgg 93 ||||||||||||||||||||||||||||||||| Sbjct: 5366 ctgctgccttctcctccaccgtcggggctccgg 5398 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 581 ccccatcatgatgagtgccggag 603 ||||||||||||||||||||||| Sbjct: 6408 ccccatcatgatgagtgccggag 6430
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 541 bits (273), Expect = e-151 Identities = 348/373 (93%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 616 Query: 591 atgagtgccggag 603 ||||||||||||| Sbjct: 617 atgagtgccggag 629 Score = 220 bits (111), Expect = 4e-54 Identities = 135/143 (94%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 80 atggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcctc 139 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 || || |||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 140 ggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttcaag 199 Query: 177 gccaacaggttcacagtcatggc 199 |||||||||||||| |||||||| Sbjct: 200 gccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 521 bits (263), Expect = e-145 Identities = 345/373 (92%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 606 Query: 591 atgagtgccggag 603 ||||||||||||| Sbjct: 607 atgagtgccggag 619 Score = 214 bits (108), Expect = 3e-52 Identities = 134/143 (93%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 ||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||| Sbjct: 70 atggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcctc 129 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 || || |||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 130 ggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttcaag 189 Query: 177 gccaacaggttcacagtcatggc 199 |||||||||||||| |||||||| Sbjct: 190 gccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 462 bits (233), Expect = e-127 Identities = 338/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 563 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 564 atgagcgccggag 576 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 27 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 86 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 87 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 146 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 147 atcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 462 bits (233), Expect = e-127 Identities = 338/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 600 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 601 atgagcgccggag 613 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 64 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 123 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 124 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 183 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 184 atcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 462 bits (233), Expect = e-127 Identities = 338/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 599 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 600 atgagcgccggag 612 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 123 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 182 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 183 atcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 462 bits (233), Expect = e-127 Identities = 338/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 383 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 384 atgagcgccggag 396
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 462 bits (233), Expect = e-127 Identities = 338/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 604 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 605 atgagcgccggag 617 Score = 161 bits (81), Expect = 3e-36 Identities = 120/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 68 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 127 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 128 gggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 187 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 188 atcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 462 bits (233), Expect = e-127 Identities = 338/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 598 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 599 atgagcgccggag 611 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 62 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 121 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 122 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 181 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 182 atcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 454 bits (229), Expect = e-124 Identities = 337/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 571 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 572 atgagcgccggag 584 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 35 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 94 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 95 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 154 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 155 atcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 454 bits (229), Expect = e-124 Identities = 337/373 (90%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 611 Query: 591 atgagtgccggag 603 ||||| ||||||| Sbjct: 612 atgagcgccggag 624 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 75 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 134 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 135 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 194 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 195 atcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 396 bits (200), Expect = e-107 Identities = 326/368 (88%) Strand = Plus / Plus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 355 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 356 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 415 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 416 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 475 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 476 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 535 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516 Query: 536 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 595 || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 576 Query: 596 tgccggag 603 ||||||| Sbjct: 577 cgccggag 584 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||| Sbjct: 26 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcctc 85 Query: 117 gggaagaagctcaagaagcagg 138 ||||||||| | |||||||||| Sbjct: 86 gggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 392 bits (198), Expect = e-106 Identities = 324/366 (88%) Strand = Plus / Plus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 355 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 356 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 415 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 416 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 475 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 476 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 535 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 536 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 595 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 729 Query: 596 tgccgg 601 ||||| Sbjct: 730 cgccgg 735
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 327 bits (165), Expect = 2e-86 Identities = 228/249 (91%) Strand = Plus / Plus Query: 355 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 414 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 415 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 474 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 475 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 534 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 535 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatga 594 ||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatgatga 566 Query: 595 gtgccggag 603 | ||||||| Sbjct: 567 gcgccggag 575 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 116 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 117 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 176 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 123 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 182 Query: 177 gccaacaggttca 189 ||||||||||| Sbjct: 183 atcaacaggttca 195 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 291 aagggcatcgtggactcgctcttccaggc 319 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 389 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 448 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 449 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 508 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 509 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 568 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256 Query: 569 gatgggcatcaa 580 |||||| ||||| Sbjct: 109255 gatggggatcaa 109244 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 351 ctcagctcctacgagtacgtcagccaggg 379 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 346 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 102 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 161 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 162 ggcaagagctccaaggccaacaggttca 189 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 57 atggctgctgccttctcctccaccgtcggggctccgg 93 |||||||||||||||||||||||||| || ||||||| Sbjct: 109982 atggctgctgccttctcctccaccgttggagctccgg 109946 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 580 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 389 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 448 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 449 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 508 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 509 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 568 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133 Query: 569 gatgggcatcaa 580 |||||| ||||| Sbjct: 31132 gatggggatcaa 31121 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 351 ctcagctcctacgagtacgtcagccaggg 379 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 346 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 102 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 161 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 162 ggcaagagctccaaggccaacaggttca 189 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 57 atggctgctgccttctcctccaccgtcggggctccgg 93 |||||||||||||||||||||||||| || ||||||| Sbjct: 31859 atggctgctgccttctcctccaccgttggagctccgg 31823 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 580 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 389 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 448 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 449 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 508 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 509 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 568 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395 Query: 569 gatgggcatcaa 580 |||||| ||||| Sbjct: 28304394 gatggggatcaa 28304383 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 351 ctcagctcctacgagtacgtcagccaggg 379 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 346 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 102 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 161 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 162 ggcaagagctccaaggccaacaggttca 189 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 57 atggctgctgccttctcctccaccgtcggggctccgg 93 |||||||||||||||||||||||||| || ||||||| Sbjct: 28305121 atggctgctgccttctcctccaccgttggagctccgg 28305085 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 580 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 389 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 448 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 449 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 508 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 509 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 568 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844 Query: 569 gatgggcatcaa 580 |||||| ||||| Sbjct: 28286843 gatggggatcaa 28286832 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 351 ctcagctcctacgagtacgtcagccaggg 379 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 236 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 296 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 346 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 102 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 161 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 162 ggcaagagctccaaggccaacaggttca 189 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 57 atggctgctgccttctcctccaccgtcggggctccgg 93 |||||||||||||||||||||||||| || ||||||| Sbjct: 28287570 atggctgctgccttctcctccaccgttggagctccgg 28287534 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 580 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 268 bits (135), Expect = 2e-68 Identities = 312/371 (84%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcatg 572 Query: 591 atgagtgccgg 601 ||||| ||||| Sbjct: 573 atgagcgccgg 583 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 110 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 111 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 167 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 168 agctcca 174 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 268 bits (135), Expect = 2e-68 Identities = 285/335 (85%) Strand = Plus / Plus Query: 267 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 326 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 327 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 386 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 387 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 446 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 447 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 506 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 507 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 566 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534 Query: 567 aagatgggcatcaaccccatcatgatgagtgccgg 601 |||||||| |||||||||||||||||||| ||||| Sbjct: 535 aagatgggaatcaaccccatcatgatgagcgccgg 569
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 268 bits (135), Expect = 2e-68 Identities = 285/335 (85%) Strand = Plus / Plus Query: 267 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 326 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 327 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 386 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 387 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 446 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 447 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 506 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 507 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 566 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397 Query: 567 aagatgggcatcaaccccatcatgatgagtgccgg 601 |||||||| |||||||||||||||||||| ||||| Sbjct: 398 aagatgggaatcaaccccatcatgatgagcgccgg 432
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 260 bits (131), Expect = 5e-66 Identities = 284/335 (84%) Strand = Plus / Plus Query: 267 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 326 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 327 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 386 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 387 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 446 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 447 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 506 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 507 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 566 |||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427 Query: 567 aagatgggcatcaaccccatcatgatgagtgccgg 601 |||||||| |||||||||||||||||||| ||||| Sbjct: 428 aagatgggaatcaaccccatcatgatgagcgccgg 462
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 228 bits (115), Expect = 2e-56 Identities = 304/367 (82%) Strand = Plus / Plus Query: 237 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 296 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 297 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 356 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 357 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 416 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 477 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 536 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 537 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 596 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattatgatgagt 639 Query: 597 gccggag 603 ||||||| Sbjct: 640 gccggag 646
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 208 bits (105), Expect = 2e-50 Identities = 180/205 (87%) Strand = Plus / Plus Query: 399 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 458 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 459 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 518 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 519 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 578 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435 Query: 579 aaccccatcatgatgagtgccggag 603 ||||||||||||||||||||||||| Sbjct: 436 aaccccatcatgatgagtgccggag 460
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 208 bits (105), Expect = 2e-50 Identities = 302/371 (81%) Strand = Plus / Plus Query: 231 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 290 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 291 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 350 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 351 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 410 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 411 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 470 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 471 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 530 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 531 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 590 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcannnnnatcatg 572 Query: 591 atgagtgccgg 601 ||||| ||||| Sbjct: 573 atgagcgccgg 583 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 57 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 110 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 111 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 167 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 168 agctcca 174 ||||||| Sbjct: 141 agctcca 147
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 477 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 536 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 537 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 596 ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 655 Query: 597 gccggag 603 ||||||| Sbjct: 656 gccggag 662
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 204 bits (103), Expect = 2e-49 Identities = 211/247 (85%) Strand = Plus / Plus Query: 357 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 416 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 477 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 536 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 537 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 596 ||||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||| Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagt 635 Query: 597 gccggag 603 || |||| Sbjct: 636 gctggag 642
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 200 bits (101), Expect = 4e-48 Identities = 179/205 (87%) Strand = Plus / Plus Query: 399 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 458 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 459 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 518 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 519 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 578 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436 Query: 579 aaccccatcatgatgagtgccggag 603 ||||||||||||||||||||||||| Sbjct: 437 aaccccatcatgatgagtgccggag 461
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 736 atgatgagtgctggag 751
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 736 atgatgagtgctggag 751
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 765 atgatgagtgctggag 780
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 647 atgatgagtgctggag 662
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 562 atgatgagtgctggag 577
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 650 atgatgagtgctggag 665
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 639 atgatgagtgctggag 654
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 647 atgatgagtgctggag 662
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 650 atgatgagtgctggag 665
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 198 bits (100), Expect = 1e-47 Identities = 217/256 (84%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 588 atgatgagtgccggag 603 ||||||||||| |||| Sbjct: 765 atgatgagtgctggag 780
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 194 bits (98), Expect = 2e-46 Identities = 161/182 (88%) Strand = Plus / Plus Query: 420 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 479 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 480 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 539 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 540 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgcc 599 || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcatgatgagcgcc 266 Query: 600 gg 601 || Sbjct: 267 gg 268
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 194 bits (98), Expect = 2e-46 Identities = 164/186 (88%) Strand = Plus / Plus Query: 418 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 477 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 478 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 537 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 538 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtg 597 |||| ||||| ||||||||||||||||||||| | || || ||||||||||||||||||| Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtg 809 Query: 598 ccggag 603 |||||| Sbjct: 810 ccggag 815
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 188 bits (95), Expect = 1e-44 Identities = 164/187 (87%) Strand = Plus / Plus Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 477 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 536 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 537 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 596 || || ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 648 Query: 597 gccggag 603 || |||| Sbjct: 649 gctggag 655 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 237 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 295 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 182 bits (92), Expect = 9e-43 Identities = 185/216 (85%) Strand = Plus / Plus Query: 388 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 447 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 448 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 507 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 508 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 567 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 568 agatgggcatcaaccccatcatgatgagtgccggag 603 ||||||| ||||||||||||||||||||||| |||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggag 646
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 182 bits (92), Expect = 9e-43 Identities = 185/216 (85%) Strand = Plus / Plus Query: 388 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 447 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 448 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 507 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 508 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 567 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 568 agatgggcatcaaccccatcatgatgagtgccggag 603 ||||||| ||||||||||||||||||||||| |||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggag 646
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 182 bits (92), Expect = 9e-43 Identities = 185/216 (85%) Strand = Plus / Plus Query: 388 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 447 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 448 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 507 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 508 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 567 | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615 Query: 568 agatgggcatcaaccccatcatgatgagtgccggag 603 ||||||| ||||||||||||||||||||||| |||| Sbjct: 616 agatgggaatcaaccccatcatgatgagtgctggag 651
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 180 bits (91), Expect = 4e-42 Identities = 148/167 (88%) Strand = Plus / Plus Query: 435 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 494 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 495 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 554 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 555 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 601 || || ||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccgg 188
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 180 bits (91), Expect = 4e-42 Identities = 163/187 (87%) Strand = Plus / Plus Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 477 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 536 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 537 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 596 ||||| ||||||||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagt 605 Query: 597 gccggag 603 ||||||| Sbjct: 606 gccggag 612
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 178 bits (90), Expect = 1e-41 Identities = 165/190 (86%) Strand = Plus / Plus Query: 414 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 473 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 474 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 533 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 534 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 593 || ||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||| Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatg 613 Query: 594 agtgccggag 603 ||||| |||| Sbjct: 614 agtgctggag 623
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 174 bits (88), Expect = 2e-40 Identities = 163/188 (86%) Strand = Plus / Plus Query: 416 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 475 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 476 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 535 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 536 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 595 ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcatgatgag 693 Query: 596 tgccggag 603 ||| |||| Sbjct: 694 tgcgggag 701
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 168 bits (85), Expect = 1e-38 Identities = 216/257 (84%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 348 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 407 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 408 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 467 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatct-ggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || ||||| ||| |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggc-tctcggggaggcaa 569 Query: 527 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 586 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| || Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629 Query: 587 catgatgagtgccggag 603 |||||||||||| |||| Sbjct: 630 catgatgagtgctggag 646
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 157 bits (79), Expect = 5e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 477 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 536 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 537 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 596 ||||||||||| ||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagt 652 Query: 597 gccggag 603 || |||| Sbjct: 653 gctggag 659
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 149 bits (75), Expect = 1e-32 Identities = 156/183 (85%) Strand = Plus / Plus Query: 419 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 478 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 479 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 538 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 539 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 598 || ||||| ||||||||||| || || || |||| |||||||| || ||||||||||| Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgc 335 Query: 599 cgg 601 ||| Sbjct: 336 cgg 338
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 147 bits (74), Expect = 5e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 426 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 485 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 486 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 545 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 546 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 603 ||||| |||||||| || ||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggag 662 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 260 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 319 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 493 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 552 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 553 agcttgtgttcgccaag 569 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 416 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 475 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 476 gaccctgcccaacatcaag 494 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 581 ccccatcatgatgagtgccggag 603 ||||||||||||||||||||||| Sbjct: 2421 ccccatcatgatgagtgccggag 2443
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 501 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 560 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 561 ttcgccaagatgggcatcaa 580 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 417 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 476 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 477 ac 478 || Sbjct: 66 ac 67 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 581 ccccatcatgatgagtgccggag 603 ||||||||||||||||||||||| Sbjct: 467 ccccatcatgatgagtgccggag 489
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 498 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 557 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 558 gtgttcgccaagatgggcatcaa 580 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 420 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 479 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 480 ctgcccaacatcaag 494 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 468 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 527 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 528 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 587 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641 Query: 588 atgatgagtgc 598 ||||||||||| Sbjct: 642 atgatgagtgc 652
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 525 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 584 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 585 atcatgatgagtgccggag 603 ||||||||||||||||||| Sbjct: 61 atcatgatgagtgccggag 79
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 498 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 557 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 558 gtgttcgccaagatgggcatcaa 580 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 420 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 479 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 480 ctgcccaacatcaag 494 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 526 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 585 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 586 tcatgatgagtgccggag 603 ||||||||||||| |||| Sbjct: 67 tcatgatgagtgctggag 84
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 492 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 551 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 552 gagcttgtgttcgccaagatgggcatca 579 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 510 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 569 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 570 atgggcatcaa 580 ||||||||||| Sbjct: 104873 atgggcatcaa 104863
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 510 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 569 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 570 atgggcatcaa 580 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 399 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 454 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 414 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 473 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 474 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 533 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 534 ggaaa 538 ||||| Sbjct: 1248 ggaaa 1252
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 463 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 522 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 523 gcaaggg 529 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 479 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 529 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 262 ccgacgaccagcaggacatcacc 284 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 304 actcgctcttccaggcgcccac 325 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 gaagaagctcaagaagcaggtg 140 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 catggcagcggagaacatcg 213 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 atctccgacgaccagcaggacatc 281 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gcagcggagaacatcgacga 217 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cccacgggcgacggcacccacgag 344 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gcaagagctccaaggccaac 182 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgccttctcctccaccgtc 83 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 ccctgcccaacatcaagatc 497 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 catggcagcggagaacatcg 213 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cccacgggcgacggcacccacgag 344 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctgctgccttctcctccacc 80 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctgctgccttctcctccacc 80 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctgctgccttctcctccacc 80 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaagaagctcaagaagcagg 138 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 ttccagtgtgagcttgtgtt 562 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 ggcttctacatcgctcctgctttc 437 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cccacgggcgacggcacccacgag 344 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ccagagggaagggcatcgtg 302 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 gtccatctctccaaaaactt 472 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gcaagagctccaaggccaac 182 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ccagagggaagggcatcgtg 302 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ccctgcccaacatcaagatc 497 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cccacgggcgacggcacccacgag 344 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 caaggccaacaggttcacagtcat 196 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgatatctccgacgaccagc 273 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 ccctgcccaacatcaagatc 497 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 tcgccaagatgggcatcaac 581 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 ggcttctacatcgctcctgctttc 437 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 caaggccaacaggttcacagtcat 196 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aagaagctcaagaagcaggt 139 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 ccctgcccaacatcaagatc 497 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ccctgcccaacatcaagatc 497 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cccacgggcgacggcacccacgag 344 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tggctgctgccttctcctcc 77 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,759,017 Number of Sequences: 3902068 Number of extensions: 4759017 Number of successful extensions: 85994 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85425 Number of HSP's gapped (non-prelim): 556 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
