ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9p21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 924 bits (466), Expect = 0.0 Identities = 466/466 (100%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 294 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 353 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 413 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 473 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 533 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 534 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 593 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 594 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 653 Query: 362 cttcaagtagattaataggtggcatgcatgtacgatgtctccagatcatgccatctcttc 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 654 cttcaagtagattaataggtggcatgcatgtacgatgtctccagatcatgccatctcttc 713 Query: 422 tcggtggttgcctgaacgagtcttctatgtataaatgaatttttac 467 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 714 tcggtggttgcctgaacgagtcttctatgtataaatgaatttttac 759
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 13161012 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 13161071 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 13161072 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 13161131 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 13161132 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 13161191 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 13161192 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 13161251 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 13161252 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 13161311 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 13161312 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 13161371 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 13161372 cttcaagtagat 13161383
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 378 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 437 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 438 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 497 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 557 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 558 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 617 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 618 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 677 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 678 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 737 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 738 cttcaagtagat 749
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 328 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 387 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 388 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 447 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 448 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 507 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 508 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 567 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 568 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 627 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 628 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 687 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 688 cttcaagtagat 699
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 350 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 409 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 410 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 469 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 470 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 529 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 530 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 589 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 590 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 649 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 650 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 709 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 710 cttcaagtagat 721
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 378 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 437 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 438 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 497 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 557 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 558 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 617 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 618 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 677 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 678 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 737 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 738 cttcaagtagat 749
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 13115287 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 13115346 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 13115347 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 13115406 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 13115407 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 13115466 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 13115467 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 13115526 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 13115527 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 13115586 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 13115587 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 13115646 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 13115647 cttcaagtagat 13115658
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 169730 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 169671 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 169670 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 169611 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 169610 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 169551 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 169550 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 169491 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 169490 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 169431 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 169430 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 169371 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 169370 cttcaagtagat 169359
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 150215 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 150274 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 150275 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 150334 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 150335 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 150394 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 150395 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 150454 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 150455 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 150514 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 150515 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgacctcccgtactt 150574 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 150575 cttcaagtagat 150586
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 452 bits (228), Expect = e-124 Identities = 336/372 (90%) Strand = Plus / Plus Query: 2 cgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcgg 61 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 333 cgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcgtcgg 392 Query: 62 ccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacact 121 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || Sbjct: 393 gcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcgccct 452 Query: 122 cggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 181 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 453 cggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctc 512 Query: 182 cttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaagga 241 |||| |||||||||||||||||| |||||| ||| || |||||||| ||||||||||| Sbjct: 513 cttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggccgcaagaagga 572 Query: 242 ggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcgg 301 |||||||||||| ||||||||||| || ||| | |||||||||| |||||||||||||| Sbjct: 573 ggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggcttcttcttcgg 632 Query: 302 cggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatactt 361 ||| | ||||||| | ||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 633 cggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgatctcccgtactt 692 Query: 362 cttcaagtagat 373 |||||||||||| Sbjct: 693 cttcaagtagat 704
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 379 bits (191), Expect = e-102 Identities = 323/367 (88%) Strand = Plus / Plus Query: 6 agcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcggcccc 65 |||||||| || || ||| |||||||||||||||| || |||||||||||||| || ||| Sbjct: 1133 agcccgctgctgcggggcgtcgaggtcggcctcgcgcacggctacctcctcgtggggccc 1192 Query: 66 ttcgcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacactcggc 125 ||||||||||| ||||||||||||| ||||||||||||||| ||||||||| | |||||| Sbjct: 1193 ttcgcgctcacgggcccgctccgcagcacgcccgtgcacggccaggccggcgcgctcggc 1252 Query: 126 gccatcggactcgtctccatcctcagcgtctgcctcaccatgtacggcgtcgcctccttc 185 ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 gccgccggcctcgtcgccatcctcagcgtctgcctcaccatgtacggcgtcgcctccttc 1312 Query: 186 aacgagggcgagccgtccaccgcgccggtgctcaccctcaccggacgcaagaaggaggcc 245 |||||||| || |||||||| ||||| |||||| |||||||| | |||||||||||| Sbjct: 1313 aacgagggggacccgtccacggcgcccacgctcacgctcaccggcaggaagaaggaggcc 1372 Query: 246 gacaagctccagaccgccgaagggtggtcgcagttcaccggaggcttcttcttcggcggt 305 |||||||| ||||||||||| || ||| | |||||||||| || |||||||||||||| Sbjct: 1373 gacaagctgcagaccgccgacggctgggccaagttcaccggggggttcttcttcggcggc 1432 Query: 306 gtatccggcgccgtctgggcatacttcctcctctacgtgctcgacctcccatacttcttc 365 | ||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct: 1433 atctccggcgtgctctgggcctactttctcctctacgtgctcgacctcccctacttcttc 1492 Query: 366 aagtaga 372 ||||||| Sbjct: 1493 aagtaga 1499
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 77.8 bits (39), Expect = 3e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 319 tctgggcatacttcctcctctacgt-gctcgacctcccatacttcttcaagtaga 372 ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 55 tctgggcctacttcctcctctacgtagctcgacctcccgtacttcttcaagtaga 109
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 319 tctgggcatacttcctcctctacgtgctcgacctcccatacttcttcaagtagatt 374 |||||||||||||||||||||| || | |||||||| |||| | ||||||||||| Sbjct: 682 tctgggcatacttcctcctctatgtcttggacctcccttactacgtcaagtagatt 737
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 319 tctgggcatacttcctcctctacgtgctcgacctcccatacttcttcaagtagatt 374 |||||||||||||||||||||| || | |||||||| |||| | ||||||||||| Sbjct: 619 tctgggcatacttcctcctctatgtcttggacctcccttactacgtcaagtagatt 674
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 225 accggacgcaagaaggaggccgacaagctccagaccgccgaa 266 ||||| |||||||||||| ||||| ||||||| ||||||||| Sbjct: 142 accggccgcaagaaggagcccgaccagctccaaaccgccgaa 183
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 277 agttcaccggaggcttcttcttcggcggtgtatccgg 313 ||||||||||||| ||||||||||| ||||| ||||| Sbjct: 640 agttcaccggagggttcttcttcggtggtgtttccgg 676
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 442 tcttctatgtataaatgaattt 463 |||||||||||||||||||||| Sbjct: 5987780 tcttctatgtataaatgaattt 5987801
>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13, complete sequence Length = 137572 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 442 tcttctatgtataaatgaattt 463 |||||||||||||||||||||| Sbjct: 11177 tcttctatgtataaatgaattt 11198
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 442 tcttctatgtataaatgaattt 463 |||||||||||||||||||||| Sbjct: 131017 tcttctatgtataaatgaattt 131038
>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence Length = 1630 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cgaggtcggcctcgcccatgg 46 ||||||||||||||||||||| Sbjct: 997 cgaggtcggcctcgcccatgg 977
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 cgcgctcactggcccgctccg 88 ||||||||||||||||||||| Sbjct: 4178355 cgcgctcactggcccgctccg 4178375 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 catcgaggtcggcctcgccc 42 |||||||||||||||||||| Sbjct: 8946139 catcgaggtcggcctcgccc 8946158
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gcgagccgtccaccgcgccgg 213 ||||||||||||||||||||| Sbjct: 2293 gcgagccgtccaccgcgccgg 2273
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 catcctcagcgtctgcctca 162 |||||||||||||||||||| Sbjct: 316 catcctcagcgtctgcctca 297
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ctcctcgtcggccccttcgc 70 |||||||||||||||||||| Sbjct: 96245 ctcctcgtcggccccttcgc 96226
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ccgcggcatcgaggtcggcc 36 |||||||||||||||||||| Sbjct: 2408060 ccgcggcatcgaggtcggcc 2408079 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gcatcgaggtcggcctcgcc 41 |||||||||||||||||||| Sbjct: 577051 gcatcgaggtcggcctcgcc 577032
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ctcctcgtcggccccttcgc 70 |||||||||||||||||||| Sbjct: 5291 ctcctcgtcggccccttcgc 5272
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 10 cgctcctccgcggcatcgaggtcggcct 37 |||||||| ||||| ||||||||||||| Sbjct: 6590 cgctcctcagcggcgtcgaggtcggcct 6617
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 cttctatgtataaatgaattttta 466 |||||||| ||||||||||||||| Sbjct: 218069 cttctatggataaatgaattttta 218092
>gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome 19, complete sequence Length = 202236 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 cttctatgtataaatgaattttta 466 |||||||| ||||||||||||||| Sbjct: 11845 cttctatggataaatgaattttta 11868
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 catacttcttcaagtagatt 374 |||||||||||||||||||| Sbjct: 143184 catacttcttcaagtagatt 143165
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ccgcggcatcgaggtcggcc 36 |||||||||||||||||||| Sbjct: 3193803 ccgcggcatcgaggtcggcc 3193784
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 gccgacaagctccagaccgccgaa 266 ||||||||||||||| |||||||| Sbjct: 1174948 gccgacaagctccagtccgccgaa 1174925
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ctgggcatacttcctcctct 339 |||||||||||||||||||| Sbjct: 65003 ctgggcatacttcctcctct 64984
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aggtcggcctcgcccatggc 47 |||||||||||||||||||| Sbjct: 217148 aggtcggcctcgcccatggc 217167
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aggtcggcctcgcccatggc 47 |||||||||||||||||||| Sbjct: 215196 aggtcggcctcgcccatggc 215215
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ccgcggcatcgaggtcggcc 36 |||||||||||||||||||| Sbjct: 173448 ccgcggcatcgaggtcggcc 173429
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 acttcttcaagtagattaat 377 |||||||||||||||||||| Sbjct: 781165 acttcttcaagtagattaat 781146
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ccgcggcatcgaggtcggcc 36 |||||||||||||||||||| Sbjct: 2979654 ccgcggcatcgaggtcggcc 2979673
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ctcctcgtcggccccttcgc 70 |||||||||||||||||||| Sbjct: 18238032 ctcctcgtcggccccttcgc 18238013
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ggcccgctccgcaacacgcc 97 |||||||||||||||||||| Sbjct: 892 ggcccgctccgcaacacgcc 911
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tcgaggtcggcctcgcccat 44 |||||||||||||||||||| Sbjct: 4350722 tcgaggtcggcctcgcccat 4350703
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ccgcggcatcgaggtcggcc 36 |||||||||||||||||||| Sbjct: 5407694 ccgcggcatcgaggtcggcc 5407675
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ctcctcgtcggccccttcgc 70 |||||||||||||||||||| Sbjct: 18396929 ctcctcgtcggccccttcgc 18396910
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 catcctcagcgtctgcctca 162 |||||||||||||||||||| Sbjct: 316 catcctcagcgtctgcctca 297
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 taggtggcatgcatgtacga 396 |||||||||||||||||||| Sbjct: 81369 taggtggcatgcatgtacga 81350
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 catacttcttcaagtagatt 374 |||||||||||||||||||| Sbjct: 121780 catacttcttcaagtagatt 121761 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,100,122 Number of Sequences: 3902068 Number of extensions: 3100122 Number of successful extensions: 56258 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55238 Number of HSP's gapped (non-prelim): 1019 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
