Clone Information

BLAST Search Result

Clone Name	baal9p09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	268	1e-68
2	dbj\|AP002819.1\| Oryza sativa (japonica cultivar-group) genomic D...	268	1e-68
3	dbj\|AK099625.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	268	1e-68
4	dbj\|AK071073.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	268	1e-68
5	dbj\|AK069738.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	268	1e-68
6	ref\|NM_192873.1\| Oryza sativa (japonica cultivar-group), predic...	252	8e-64
7	ref\|NM_125288.1\| Arabidopsis thaliana ceramidase AT5G58980 mRNA,...	66	1e-07
8	gb\|AY057506.1\| Arabidopsis thaliana AT5g58980/k19m22_180 mRNA, c...	66	1e-07
9	dbj\|AB016885.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	66	1e-07
10	ref\|NM_100612.1\| Arabidopsis thaliana ceramidase AT1G07380 mRNA,...	52	0.001
11	gb\|AC022464.4\|AC022464 Genomic sequence for Arabidopsis thaliana...	52	0.001
12	gb\|AF200447.1\|AF200447 Hypoxylon papillatum chitin synthase gene...	44	0.35
13	emb\|AL935256.1\| Lactobacillus plantarum strain WCFS1 complete ge...	42	1.4
14	gb\|AC009222.4\| Homo sapiens chromosome 17, clone RP11-429O1, com...	42	1.4
15	gb\|AC087714.6\| Homo sapiens chromosome 17, clone RP11-167A1, com...	42	1.4
16	gb\|U60517.1\|PMU60517 Penicillium marneffei chitin synthase (PmCH...	42	1.4
17	ref\|NM_129358.3\| Arabidopsis thaliana ceramidase AT2G38010 trans...	40	5.5
18	ref\|NM_201899.1\| Arabidopsis thaliana ceramidase AT2G38010 trans...	40	5.5
19	gb\|AY359940.1\| Trachelomonas strain T603 large subunit ribosomal...	40	5.5
20	gb\|AC115844.7\| Mus musculus chromosome 15, clone RP24-240I3, com...	40	5.5
21	gb\|AC118259.10\| Mus musculus chromosome 15, clone RP24-352J7, co...	40	5.5
22	emb\|Z68224.1\|HSE129H9 Human DNA sequence from clone LL22NC01-129...	40	5.5
23	emb\|AL513548.8\| Human DNA sequence from clone RP11-457M11 on chr...	40	5.5
24	emb\|AL158069.16\| Human DNA sequence from clone RP13-57D9 on chro...	40	5.5
25	emb\|AL122008.28\|HSJ799P18 Human DNA sequence from clone RP4-799P...	40	5.5
26	emb\|AL021406.1\|HS997K18 Human DNA sequence from clone RP5-997K18...	40	5.5
27	emb\|BX324172.22\| Zebrafish DNA sequence from clone DKEYP-86D6 in...	40	5.5
28	gb\|AC095060.3\| Homo sapiens BAC clone RP11-436F23 from 4, comple...	40	5.5
29	emb\|BX819243.1\|CNS0AA0G Arabidopsis thaliana Full-length cDNA Co...	40	5.5
30	gb\|AC007661.2\|AC007661 Arabidopsis thaliana chromosome II sectio...	40	5.5
31	emb\|AL355838.3\|CNS05TCT Human chromosome 14 DNA sequence BAC R-7...	40	5.5

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  268 bits (135), Expect = 1e-68
 Identities = 306/363 (84%)
 Strand = Plus / Minus

                                                                            
Query: 46       attttggacttgcatgagttgattaataactccattccctgattcctgatggaggcgtca 105
                ||||||||| | |||||||||||||| || |||||||| |  | | | |||||||| |||
Sbjct: 24918903 attttggacctacatgagttgattaacaagtccattccattgtccttcatggaggcttca 24918844

                                                                            
Query: 106      tcttgcttgcgctgtcaagtccgtggttttggttcgtcaaggatatggctatgtcttctt 165
                ||||| ||| |||  ||||  |||||||||||||| || ||  ||||| |||| ||||||
Sbjct: 24918843 tcttggttgtgctaccaagctcgtggttttggttcatccagagtatggttatggcttctt 24918784

                                                                            
Query: 166      ttggttcttgtccttcagaattgcaccccggtgctctctgactgtgcatatttggtcggc 225
                 | | |||||| |||| |||||||| || ||| ||||| | ||   | ||| ||||||| 
Sbjct: 24918783 ctagctcttgttcttctgaattgcagcctggtactctcagcctcgccgtatctggtcggt 24918724

                                                                            
Query: 226      atgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaat 285
                ||||| ||||  ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 24918723 atggggagcttcgacataacaggacctgcagcagatgttaacatgatgggatatgcaaat 24918664

                                                                            
Query: 286      actgagcagattgcatcagggattcacttcaggctaaagtcacgcgcatttattgttgct 345
                ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 24918663 actgagcagattgcatcgggaattcacttcaggctgaagtcacgtgcatttattgtggct 24918604

                                                                            
Query: 346      gagcctaatggagagcgtgttgtctttgtgaacctggatgcttgcatggcatcacagctt 405
                |||||||||||| |||||||||| ||||| ||  | |||||||| |||||||||||| ||
Sbjct: 24918603 gagcctaatggaaagcgtgttgtgtttgttaatatcgatgcttgtatggcatcacagatt 24918544

                   
Query: 406      gtg 408
                |||
Sbjct: 24918543 gtg 24918541

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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0501G01
          Length = 154561

 Score =  268 bits (135), Expect = 1e-68
 Identities = 306/363 (84%)
 Strand = Plus / Minus

                                                                          
Query: 46     attttggacttgcatgagttgattaataactccattccctgattcctgatggaggcgtca 105
              ||||||||| | |||||||||||||| || |||||||| |  | | | |||||||| |||
Sbjct: 142023 attttggacctacatgagttgattaacaagtccattccattgtccttcatggaggcttca 141964

                                                                          
Query: 106    tcttgcttgcgctgtcaagtccgtggttttggttcgtcaaggatatggctatgtcttctt 165
              ||||| ||| |||  ||||  |||||||||||||| || ||  ||||| |||| ||||||
Sbjct: 141963 tcttggttgtgctaccaagctcgtggttttggttcatccagagtatggttatggcttctt 141904

                                                                          
Query: 166    ttggttcttgtccttcagaattgcaccccggtgctctctgactgtgcatatttggtcggc 225
               | | |||||| |||| |||||||| || ||| ||||| | ||   | ||| ||||||| 
Sbjct: 141903 ctagctcttgttcttctgaattgcagcctggtactctcagcctcgccgtatctggtcggt 141844

                                                                          
Query: 226    atgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaat 285
              ||||| ||||  ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 141843 atggggagcttcgacataacaggacctgcagcagatgttaacatgatgggatatgcaaat 141784

                                                                          
Query: 286    actgagcagattgcatcagggattcacttcaggctaaagtcacgcgcatttattgttgct 345
              ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 141783 actgagcagattgcatcgggaattcacttcaggctgaagtcacgtgcatttattgtggct 141724

                                                                          
Query: 346    gagcctaatggagagcgtgttgtctttgtgaacctggatgcttgcatggcatcacagctt 405
              |||||||||||| |||||||||| ||||| ||  | |||||||| |||||||||||| ||
Sbjct: 141723 gagcctaatggaaagcgtgttgtgtttgttaatatcgatgcttgtatggcatcacagatt 141664

                 
Query: 406    gtg 408
              |||
Sbjct: 141663 gtg 141661

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>dbj|AK099625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054N18, full
           insert sequence
          Length = 3038

 Score =  268 bits (135), Expect = 1e-68
 Identities = 306/363 (84%)
 Strand = Plus / Plus

                                                                       
Query: 46  attttggacttgcatgagttgattaataactccattccctgattcctgatggaggcgtca 105
           ||||||||| | |||||||||||||| || |||||||| |  | | | |||||||| |||
Sbjct: 341 attttggacctacatgagttgattaacaagtccattccattgtccttcatggaggcttca 400

                                                                       
Query: 106 tcttgcttgcgctgtcaagtccgtggttttggttcgtcaaggatatggctatgtcttctt 165
           ||||| ||| |||  ||||  |||||||||||||| || ||  ||||| |||| ||||||
Sbjct: 401 tcttggttgtgctaccaagctcgtggttttggttcatccagagtatggttatggcttctt 460

                                                                       
Query: 166 ttggttcttgtccttcagaattgcaccccggtgctctctgactgtgcatatttggtcggc 225
            | | |||||| |||| |||||||| || ||| ||||| | ||   | ||| ||||||| 
Sbjct: 461 ctagctcttgttcttctgaattgcagcctggtactctcagcctcgccgtatctggtcggt 520

                                                                       
Query: 226 atgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaat 285
           ||||| ||||  ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 521 atggggagcttcgacataacaggacctgcagcagatgttaacatgatgggatatgcaaat 580

                                                                       
Query: 286 actgagcagattgcatcagggattcacttcaggctaaagtcacgcgcatttattgttgct 345
           ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 581 actgagcagattgcatcgggaattcacttcaggctgaagtcacgtgcatttattgtggct 640

                                                                       
Query: 346 gagcctaatggagagcgtgttgtctttgtgaacctggatgcttgcatggcatcacagctt 405
           |||||||||||| |||||||||| ||||| ||  | |||||||| |||||||||||| ||
Sbjct: 641 gagcctaatggaaagcgtgttgtgtttgttaatatcgatgcttgtatggcatcacagatt 700

              
Query: 406 gtg 408
           |||
Sbjct: 701 gtg 703

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>dbj|AK071073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076B04, full
           insert sequence
          Length = 1541

 Score =  268 bits (135), Expect = 1e-68
 Identities = 306/363 (84%)
 Strand = Plus / Plus

                                                                       
Query: 46  attttggacttgcatgagttgattaataactccattccctgattcctgatggaggcgtca 105
           ||||||||| | |||||||||||||| || |||||||| |  | | | |||||||| |||
Sbjct: 216 attttggacctacatgagttgattaacaagtccattccattgtccttcatggaggcttca 275

                                                                       
Query: 106 tcttgcttgcgctgtcaagtccgtggttttggttcgtcaaggatatggctatgtcttctt 165
           ||||| ||| |||  ||||  |||||||||||||| || ||  ||||| |||| ||||||
Sbjct: 276 tcttggttgtgctaccaagctcgtggttttggttcatccagagtatggttatggcttctt 335

                                                                       
Query: 166 ttggttcttgtccttcagaattgcaccccggtgctctctgactgtgcatatttggtcggc 225
            | | |||||| |||| |||||||| || ||| ||||| | ||   | ||| ||||||| 
Sbjct: 336 ctagctcttgttcttctgaattgcagcctggtactctcagcctcgccgtatctggtcggt 395

                                                                       
Query: 226 atgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaat 285
           ||||| ||||  ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 396 atggggagcttcgacataacaggacctgcagcagatgttaacatgatgggatatgcaaat 455

                                                                       
Query: 286 actgagcagattgcatcagggattcacttcaggctaaagtcacgcgcatttattgttgct 345
           ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 456 actgagcagattgcatcgggaattcacttcaggctgaagtcacgtgcatttattgtggct 515

                                                                       
Query: 346 gagcctaatggagagcgtgttgtctttgtgaacctggatgcttgcatggcatcacagctt 405
           |||||||||||| |||||||||| ||||| ||  | |||||||| |||||||||||| ||
Sbjct: 516 gagcctaatggaaagcgtgttgtgtttgttaatatcgatgcttgtatggcatcacagatt 575

              
Query: 406 gtg 408
           |||
Sbjct: 576 gtg 578

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>dbj|AK069738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028C17, full
           insert sequence
          Length = 3071

 Score =  268 bits (135), Expect = 1e-68
 Identities = 306/363 (84%)
 Strand = Plus / Plus

                                                                       
Query: 46  attttggacttgcatgagttgattaataactccattccctgattcctgatggaggcgtca 105
           ||||||||| | |||||||||||||| || |||||||| |  | | | |||||||| |||
Sbjct: 447 attttggacctacatgagttgattaacaagtccattccattgtccttcatggaggcttca 506

                                                                       
Query: 106 tcttgcttgcgctgtcaagtccgtggttttggttcgtcaaggatatggctatgtcttctt 165
           ||||| ||| |||  ||||  |||||||||||||| || ||  ||||| |||| ||||||
Sbjct: 507 tcttggttgtgctaccaagctcgtggttttggttcatccagagtatggttatggcttctt 566

                                                                       
Query: 166 ttggttcttgtccttcagaattgcaccccggtgctctctgactgtgcatatttggtcggc 225
            | | |||||| |||| |||||||| || ||| ||||| | ||   | ||| ||||||| 
Sbjct: 567 ctagctcttgttcttctgaattgcagcctggtactctcagcctcgccgtatctggtcggt 626

                                                                       
Query: 226 atgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaat 285
           ||||| ||||  ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 627 atggggagcttcgacataacaggacctgcagcagatgttaacatgatgggatatgcaaat 686

                                                                       
Query: 286 actgagcagattgcatcagggattcacttcaggctaaagtcacgcgcatttattgttgct 345
           ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 687 actgagcagattgcatcgggaattcacttcaggctgaagtcacgtgcatttattgtggct 746

                                                                       
Query: 346 gagcctaatggagagcgtgttgtctttgtgaacctggatgcttgcatggcatcacagctt 405
           |||||||||||| |||||||||| ||||| ||  | |||||||| |||||||||||| ||
Sbjct: 747 gagcctaatggaaagcgtgttgtgtttgttaatatcgatgcttgtatggcatcacagatt 806

              
Query: 406 gtg 408
           |||
Sbjct: 807 gtg 809

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>ref|NM_192873.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2457

 Score =  252 bits (127), Expect = 8e-64
 Identities = 268/315 (85%)
 Strand = Plus / Plus

                                                                       
Query: 94  atggaggcgtcatcttgcttgcgctgtcaagtccgtggttttggttcgtcaaggatatgg 153
           |||||||| |||||||| ||| |||  ||||  |||||||||||||| || ||  |||||
Sbjct: 1   atggaggcttcatcttggttgtgctaccaagctcgtggttttggttcatccagagtatgg 60

                                                                       
Query: 154 ctatgtcttcttttggttcttgtccttcagaattgcaccccggtgctctctgactgtgca 213
            |||| |||||| | | |||||| |||| |||||||| || ||| ||||| | ||   | 
Sbjct: 61  ttatggcttcttctagctcttgttcttctgaattgcagcctggtactctcagcctcgccg 120

                                                                       
Query: 214 tatttggtcggcatgggaagctatgacataacagggccagcagcagatgttaacatgatg 273
           ||| ||||||| ||||| ||||  ||||||||||| || |||||||||||||||||||||
Sbjct: 121 tatctggtcggtatggggagcttcgacataacaggacctgcagcagatgttaacatgatg 180

                                                                       
Query: 274 ggatatgcaaatactgagcagattgcatcagggattcacttcaggctaaagtcacgcgca 333
           ||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 181 ggatatgcaaatactgagcagattgcatcgggaattcacttcaggctgaagtcacgtgca 240

                                                                       
Query: 334 tttattgttgctgagcctaatggagagcgtgttgtctttgtgaacctggatgcttgcatg 393
           |||||||| ||||||||||||||| |||||||||| ||||| ||  | |||||||| |||
Sbjct: 241 tttattgtggctgagcctaatggaaagcgtgttgtgtttgttaatatcgatgcttgtatg 300

                          
Query: 394 gcatcacagcttgtg 408
           ||||||||| |||||
Sbjct: 301 gcatcacagattgtg 315

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>ref|NM_125288.1| Arabidopsis thaliana ceramidase AT5G58980 mRNA, complete cds
          Length = 2202

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 229 ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgc 281
           |||||||||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct: 100 ggaagctatgacatcacaggacctgcagctgatgttaacatgatgggttatgc 152

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>gb|AY057506.1| Arabidopsis thaliana AT5g58980/k19m22_180 mRNA, complete cds
          Length = 2618

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 229 ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgc 281
           |||||||||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct: 302 ggaagctatgacatcacaggacctgcagctgatgttaacatgatgggttatgc 354

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>dbj|AB016885.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22
          Length = 77758

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 229   ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgc 281
             |||||||||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct: 67222 ggaagctatgacatcacaggacctgcagctgatgttaacatgatgggttatgc 67170

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>ref|NM_100612.1| Arabidopsis thaliana ceramidase AT1G07380 mRNA, complete cds
          Length = 2340

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 227 tgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaata 286
           |||||||||||||||| || || || || || |||||||| |||||||| ||||| || |
Sbjct: 122 tgggaagctatgacattactggcccggctgctgatgttaatatgatgggttatgctaaca 181

                                             
Query: 287 ctgagcagattgcatcagggattcacttcaggct 320
             |||||  | ||||| || ||||||||||||||
Sbjct: 182 tggagcaagtagcatctggtattcacttcaggct 215



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 359 agcgtgttgtctttgtgaacctggatgcttgcatggcatcaca 401
           |||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 254 agcgggttgtgtttgttaacctcgatgcttgcatggcttcaca 296

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>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
             complete sequence
          Length = 104830

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 227   tgggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaata 286
             |||||||||||||||| || || || || || |||||||| |||||||| ||||| || |
Sbjct: 75875 tgggaagctatgacattactggcccggctgctgatgttaatatgatgggttatgctaaca 75934

                                               
Query: 287   ctgagcagattgcatcagggattcacttcaggct 320
               |||||  | ||||| || ||||||||||||||
Sbjct: 75935 tggagcaagtagcatctggtattcacttcaggct 75968



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 359   agcgtgttgtctttgtgaacctggatgcttgcatggcatcaca 401
             |||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 76007 agcgggttgtgtttgttaacctcgatgcttgcatggcttcaca 76049

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>gb|AF200447.1|AF200447 Hypoxylon papillatum chitin synthase gene, partial cds
          Length = 249

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 159 tcttcttttggttcttgtccttcaga 184
           |||||||||||||||| |||||||||
Sbjct: 247 tcttcttttggttcttttccttcaga 222

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>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11
          Length = 302050

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    tgttcttctgagattttggac 54
             |||||||||||||||||||||
Sbjct: 97161 tgttcttctgagattttggac 97141

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>gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, complete sequence
          Length = 184304

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     gattaataactccattccctg 86
              |||||||||||||||||||||
Sbjct: 165624 gattaataactccattccctg 165644

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>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence
          Length = 163377

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     gattaataactccattccctg 86
              |||||||||||||||||||||
Sbjct: 160195 gattaataactccattccctg 160175

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>gb|U60517.1|PMU60517 Penicillium marneffei chitin synthase (PmCHS3) gene, partial cds
          Length = 621

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 159 tcttcttttggttcttgtccttcag 183
           |||||||||||||||| ||||||||
Sbjct: 379 tcttcttttggttcttctccttcag 355

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>ref|NM_129358.3| Arabidopsis thaliana ceramidase AT2G38010 transcript variant
           AT2G38010.1 mRNA, complete cds
          Length = 2338

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 229 ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaa 284
           |||||||||||||| || || || || || ||||| ||||||||||| || |||||
Sbjct: 91  ggaagctatgacatcactggtcctgccgctgatgtcaacatgatgggctacgcaaa 146

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>ref|NM_201899.1| Arabidopsis thaliana ceramidase AT2G38010 transcript variant
           AT2G38010.2 mRNA, complete cds
          Length = 2443

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 229 ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaa 284
           |||||||||||||| || || || || || ||||| ||||||||||| || |||||
Sbjct: 91  ggaagctatgacatcactggtcctgccgctgatgtcaacatgatgggctacgcaaa 146

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>gb|AY359940.1| Trachelomonas strain T603 large subunit ribosomal RNA gene, partial
           sequence
          Length = 1345

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 297 tgcatcagggattcacttcaggct 320
           |||| |||||||||||||||||||
Sbjct: 83  tgcagcagggattcacttcaggct 60

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>gb|AC115844.7| Mus musculus chromosome 15, clone RP24-240I3, complete sequence
          Length = 164109

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    tgtcttcttttggttcttgt 176
              ||||||||||||||||||||
Sbjct: 134003 tgtcttcttttggttcttgt 134022

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>gb|AC118259.10| Mus musculus chromosome 15, clone RP24-352J7, complete sequence
          Length = 146572

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    tgtcttcttttggttcttgt 176
              ||||||||||||||||||||
Sbjct: 145432 tgtcttcttttggttcttgt 145413

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>emb|Z68224.1|HSE129H9 Human DNA sequence from clone LL22NC01-129H9 on chromosome 22, complete
             sequence
          Length = 37170

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    tgagattttggacttgcatg 61
             ||||||||||||||||||||
Sbjct: 23549 tgagattttggacttgcatg 23568

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>emb|AL513548.8| Human DNA sequence from clone RP11-457M11 on chromosome 6 Contains the
             gene for basal transcriptional activator HABT1,
             ,vomeronasal olfactory 1 receptor chromosome 6-5
             pseudogene VN1R6-5P, a novel gene, a novel zinc finger
             protein gene or pseudogene and three CpG islands, complete
             sequence
          Length = 109476

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   tcttcttttggttcttgtcc 178
             ||||||||||||||||||||
Sbjct: 23407 tcttcttttggttcttgtcc 23388

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>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2
              Contains the gene for TED protein (TED),  the 5' end of the
              ED1 gene for ectodermal dysplasia 1, anhidrotic, two novel
              genes and three CpG islands, complete sequence
          Length = 186538

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     agattttggacttgcatgag 63
              ||||||||||||||||||||
Sbjct: 166413 agattttggacttgcatgag 166432

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>emb|AL122008.28|HSJ799P18 Human DNA sequence from clone RP4-799P18 on chromosome 1q42.2-43
             Contains the 3' end of the SLC35F3 gene for solute carrier
             family 35 member F3, two novel genes and three CpG
             islands, complete sequence
          Length = 144407

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    agattttggacttgcatgag 63
             ||||||||||||||||||||
Sbjct: 26279 agattttggacttgcatgag 26298

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>emb|AL021406.1|HS997K18 Human DNA sequence from clone RP5-997K18 on chromosome 20p12 Contains
            a novel gene, complete sequence
          Length = 119420

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   agattttggacttgcatgag 63
            ||||||||||||||||||||
Sbjct: 8315 agattttggacttgcatgag 8296

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>emb|BX324172.22| Zebrafish DNA sequence from clone DKEYP-86D6 in linkage group 13,
             complete sequence
          Length = 184555

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    gattttggacttgcatgagt 64
             ||||||||||||||||||||
Sbjct: 94512 gattttggacttgcatgagt 94493

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>gb|AC095060.3| Homo sapiens BAC clone RP11-436F23 from 4, complete sequence
          Length = 111259

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    agattttggacttgcatgag 63
             ||||||||||||||||||||
Sbjct: 13909 agattttggacttgcatgag 13928

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>emb|BX819243.1|CNS0AA0G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB5ZD03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 2381

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 229 ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaa 284
           |||||||||||||| || || || || || ||||| ||||||||||| || |||||
Sbjct: 190 ggaagctatgacatcactggtcctgccgctgatgtcaacatgatgggctacgcaaa 245

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>gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II section 205 of 255 of the complete
             sequence. Sequence from clones F13M22, T8P21, F16M14
          Length = 95612

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 229   ggaagctatgacataacagggccagcagcagatgttaacatgatgggatatgcaaa 284
             |||||||||||||| || || || || || ||||| ||||||||||| || |||||
Sbjct: 70090 ggaagctatgacatcactggtcctgccgctgatgtcaacatgatgggctacgcaaa 70145

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>emb|AL355838.3|CNS05TCT Human chromosome 14 DNA sequence BAC R-705B14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167875

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     agattttggacttgcatgag 63
              ||||||||||||||||||||
Sbjct: 109715 agattttggacttgcatgag 109696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,745,887
Number of Sequences: 3902068
Number of extensions: 3745887
Number of successful extensions: 86751
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86664
Number of HSP's gapped (non-prelim): 74
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result