Clone Name | baal9n24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK058445.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G05, full insert sequence Length = 850 Score = 373 bits (188), Expect = e-100 Identities = 344/396 (86%) Strand = Plus / Plus Query: 2 gcgagtggcaccggccactccgcacgctcgctcgcaaccaggaccagaagcttatgttcg 61 |||||||||||||||| ||||||||||||| | || ||||||||||||||| ||||||| Sbjct: 244 gcgagtggcaccggccgctccgcacgctcgaccccacccaggaccagaagctcatgttcg 303 Query: 62 gactcctcttctccctgcgctcatttaccgccaagatcgaccccacctcaacagaacacg 121 | |||||||||||||| ||||| || |||||||||||||| |||||| || ||||| | | Sbjct: 304 gcctcctcttctccctccgctccttcaccgccaagatcgatcccaccacagcagaaaagg 363 Query: 122 ccaatcttggggcgccactactgccaggtcagggatgctcatttcatagcttcaagacaa 181 |||||||||| |||||||||||| || ||||| ||||||||| | ||||||||||||| Sbjct: 364 ggaatcttggggtgccactactgccgggccagggttgctcattttacagcttcaagacaa 423 Query: 182 acacgtataaattgaactacatggagagcccatctggtataaagcttattctccttaccc 241 |||| || |||||||||| | | |||||||| |||||||| ||||||||||| |||| | Sbjct: 424 acacatacaaattgaacttcctagagagcccttctggtatcaagcttattctaattacac 483 Query: 242 atccaagaactggtgatcaacgagatgcgctgaagcatatctacagcctatatgtggagt 301 ||||||| |||||||||||||| || |||||||||||||||||| |||||||||||| | Sbjct: 484 atccaaggactggtgatcaacgtgacacgctgaagcatatctacaacctatatgtggaat 543 Query: 302 atgttgtaaaaaatcctctgtatgctcccggcagcccaatcaagtgtgaccttttcaata 361 ||||||||||||||||| |||| ||||| |||| ||||||||||| || |||||||||| Sbjct: 544 atgttgtaaaaaatcctttgtacgctcctggcacaccaatcaagtgcgagcttttcaata 603 Query: 362 aacatctcgatcagtatgtgaaaacattgatttgat 397 | || || ||||| ||||| ||||||||||| |||| Sbjct: 604 agcaccttgatcaatatgtcaaaacattgatatgat 639
>ref|NM_193786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 540 Score = 371 bits (187), Expect = 1e-99 Identities = 340/391 (86%) Strand = Plus / Plus Query: 2 gcgagtggcaccggccactccgcacgctcgctcgcaaccaggaccagaagcttatgttcg 61 |||||||||||||||| ||||||||||||| | || ||||||||||||||| ||||||| Sbjct: 146 gcgagtggcaccggccgctccgcacgctcgaccccacccaggaccagaagctcatgttcg 205 Query: 62 gactcctcttctccctgcgctcatttaccgccaagatcgaccccacctcaacagaacacg 121 | |||||||||||||| ||||| || |||||||||||||| |||||| || ||||| | | Sbjct: 206 gcctcctcttctccctccgctccttcaccgccaagatcgatcccaccacagcagaaaagg 265 Query: 122 ccaatcttggggcgccactactgccaggtcagggatgctcatttcatagcttcaagacaa 181 |||||||||| |||||||||||| || ||||| ||||||||| | ||||||||||||| Sbjct: 266 ggaatcttggggtgccactactgccgggccagggttgctcattttacagcttcaagacaa 325 Query: 182 acacgtataaattgaactacatggagagcccatctggtataaagcttattctccttaccc 241 |||| || |||||||||| | | |||||||| |||||||| ||||||||||| |||| | Sbjct: 326 acacatacaaattgaacttcctagagagcccttctggtatcaagcttattctaattacac 385 Query: 242 atccaagaactggtgatcaacgagatgcgctgaagcatatctacagcctatatgtggagt 301 ||||||| |||||||||||||| || |||||||||||||||||| |||||||||||| | Sbjct: 386 atccaaggactggtgatcaacgtgacacgctgaagcatatctacaacctatatgtggaat 445 Query: 302 atgttgtaaaaaatcctctgtatgctcccggcagcccaatcaagtgtgaccttttcaata 361 ||||||||||||||||| |||| ||||| |||| ||||||||||| || |||||||||| Sbjct: 446 atgttgtaaaaaatcctttgtacgctcctggcacaccaatcaagtgcgagcttttcaata 505 Query: 362 aacatctcgatcagtatgtgaaaacattgat 392 | || || ||||| ||||| ||||||||||| Sbjct: 506 agcaccttgatcaatatgtcaaaacattgat 536
>dbj|AK068877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F01, full insert sequence Length = 869 Score = 351 bits (177), Expect = 1e-93 Identities = 344/399 (86%), Gaps = 3/399 (0%) Strand = Plus / Plus Query: 2 gcgagtggcaccggccactccgcacgctcgctcgcaaccaggaccagaagcttatgttcg 61 |||||||||||||||| ||||||||||||| | || ||||||||||||||| ||||||| Sbjct: 206 gcgagtggcaccggccgctccgcacgctcgaccccacccaggaccagaagctcatgttcg 265 Query: 62 gactcctcttctccctgcgctcatttaccgccaagatcgaccccacctcaacagaacacg 121 | |||||||||||||| ||||| || |||||||||||||| |||||| || ||||| | | Sbjct: 266 gcctcctcttctccctccgctccttcaccgccaagatcgatcccaccacagcagaaaagg 325 Query: 122 ccaatcttggggcgccactactgccaggtcagggatgctcatttcatagcttcaagacaa 181 |||||||||| |||||||||||| || ||||| ||||||||| | ||||||||||||| Sbjct: 326 ggaatcttggggtgccactactgccgggccagggttgctcattttacagcttcaagacaa 385 Query: 182 acacgtataaattgaactacatggagagcccatctggtataaagcttattctccttaccc 241 |||| || |||||||||| | | |||||||| |||||||| ||||||||||| |||| | Sbjct: 386 acacatacaaattgaacttcctagagagcccttctggtatcaagcttattctaattacac 445 Query: 242 atccaagaactggtgatcaacgagatgcgctgaagcatatctacagcctatatgtggagt 301 ||||||| |||||||||||||| || |||||||||||||||||| |||||||||||| | Sbjct: 446 atccaaggactggtgatcaacgtgacacgctgaagcatatctacaacctatatgtggaat 505 Query: 302 atgttgtaaaaaatcctctgtatgctcccggcagcccaatcaa---gtgtgaccttttca 358 ||||||||||||||||| |||| ||||| |||| |||||||| ||| || ||||||| Sbjct: 506 atgttgtaaaaaatcctttgtacgctcctggcacaccaatcaacaggtgcgagcttttca 565 Query: 359 ataaacatctcgatcagtatgtgaaaacattgatttgat 397 |||| || || ||||| ||||| ||||||||||| |||| Sbjct: 566 ataagcaccttgatcaatatgtcaaaacattgatatgat 604
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 133 bits (67), Expect = 6e-28 Identities = 109/123 (88%) Strand = Plus / Minus Query: 224 agcttattctccttacccatccaagaactggtgatcaacgagatgcgctgaagcatatct 283 |||||||||| |||| |||||||| |||||||||||||| || ||||||||||||||| Sbjct: 18133048 agcttattctaattacacatccaaggactggtgatcaacgtgacacgctgaagcatatct 18132989 Query: 284 acagcctatatgtggagtatgttgtaaaaaatcctctgtatgctcccggcagcccaatca 343 ||| |||||||||||| |||||||||||||||||| |||| ||||| |||| ||||||| Sbjct: 18132988 acaacctatatgtggaatatgttgtaaaaaatcctttgtacgctcctggcacaccaatca 18132929 Query: 344 agt 346 ||| Sbjct: 18132928 agt 18132926 Score = 125 bits (63), Expect = 1e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 2 gcgagtggcaccggccactccgcacgctcgctcgcaaccaggaccagaagcttatgttcg 61 |||||||||||||||| ||||||||||||| | || ||||||||||||||| ||||||| Sbjct: 18134180 gcgagtggcaccggccgctccgcacgctcgaccccacccaggaccagaagctcatgttcg 18134121 Query: 62 gactcctcttctccctgcgctcatttaccgccaagatcgaccccacc 108 | |||||||||||||| ||||| || |||||||||||||| |||||| Sbjct: 18134120 gcctcctcttctccctccgctccttcaccgccaagatcgatcccacc 18134074 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 124 aatcttggggcgccactactgccaggtcagggatgctcatttcatagcttcaagacaaac 183 |||||||||| |||||||||||| || ||||| ||||||||| | ||||||||||||||| Sbjct: 18133287 aatcttggggtgccactactgccgggccagggttgctcattttacagcttcaagacaaac 18133228 Query: 184 acgtataaattgaactacatggagagcccatctggtat 221 || || |||||||||| | | |||||||| |||||||| Sbjct: 18133227 acatacaaattgaacttcctagagagcccttctggtat 18133190 Score = 44.1 bits (22), Expect = 0.41 Identities = 40/46 (86%) Strand = Plus / Minus Query: 352 cttttcaataaacatctcgatcagtatgtgaaaacattgatttgat 397 ||||||||||| || || ||||| ||||| ||||||||||| |||| Sbjct: 18132198 cttttcaataagcaccttgatcaatatgtcaaaacattgatatgat 18132153
>dbj|AP002970.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504D03 Length = 139201 Score = 133 bits (67), Expect = 6e-28 Identities = 109/123 (88%) Strand = Plus / Minus Query: 224 agcttattctccttacccatccaagaactggtgatcaacgagatgcgctgaagcatatct 283 |||||||||| |||| |||||||| |||||||||||||| || ||||||||||||||| Sbjct: 109489 agcttattctaattacacatccaaggactggtgatcaacgtgacacgctgaagcatatct 109430 Query: 284 acagcctatatgtggagtatgttgtaaaaaatcctctgtatgctcccggcagcccaatca 343 ||| |||||||||||| |||||||||||||||||| |||| ||||| |||| ||||||| Sbjct: 109429 acaacctatatgtggaatatgttgtaaaaaatcctttgtacgctcctggcacaccaatca 109370 Query: 344 agt 346 ||| Sbjct: 109369 agt 109367 Score = 125 bits (63), Expect = 1e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 2 gcgagtggcaccggccactccgcacgctcgctcgcaaccaggaccagaagcttatgttcg 61 |||||||||||||||| ||||||||||||| | || ||||||||||||||| ||||||| Sbjct: 110621 gcgagtggcaccggccgctccgcacgctcgaccccacccaggaccagaagctcatgttcg 110562 Query: 62 gactcctcttctccctgcgctcatttaccgccaagatcgaccccacc 108 | |||||||||||||| ||||| || |||||||||||||| |||||| Sbjct: 110561 gcctcctcttctccctccgctccttcaccgccaagatcgatcccacc 110515 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 124 aatcttggggcgccactactgccaggtcagggatgctcatttcatagcttcaagacaaac 183 |||||||||| |||||||||||| || ||||| ||||||||| | ||||||||||||||| Sbjct: 109728 aatcttggggtgccactactgccgggccagggttgctcattttacagcttcaagacaaac 109669 Query: 184 acgtataaattgaactacatggagagcccatctggtat 221 || || |||||||||| | | |||||||| |||||||| Sbjct: 109668 acatacaaattgaacttcctagagagcccttctggtat 109631 Score = 44.1 bits (22), Expect = 0.41 Identities = 40/46 (86%) Strand = Plus / Minus Query: 352 cttttcaataaacatctcgatcagtatgtgaaaacattgatttgat 397 ||||||||||| || || ||||| ||||| ||||||||||| |||| Sbjct: 108639 cttttcaataagcaccttgatcaatatgtcaaaacattgatatgat 108594
>gb|DQ019456.1| Lilium longiflorum clone LP60 unknown mRNA Length = 728 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 36 caaccaggaccagaagcttatgttcggactcctcttctccctgcgctcatttaccgccaa 95 |||||||||||||||||| |||||||| ||||||||||| || || || || |||||||| Sbjct: 192 caaccaggaccagaagctcatgttcggcctcctcttctctctacgatccttcaccgccaa 251 Query: 96 gatcgaccccacc 108 ||| ||||||||| Sbjct: 252 gatggaccccacc 264 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 274 aagcatatctacagcctatatgtggagtatgttgtaaaaaatcc 317 |||||||| |||||||| ||||||||||||||||| || ||||| Sbjct: 430 aagcatatatacagcctgtatgtggagtatgttgtcaagaatcc 473
>gb|AC008267.6| Homo sapiens BAC clone GS1-124K5 from 7, complete sequence Length = 196954 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 373 cagtatgtgaaaacattgattt 394 |||||||||||||||||||||| Sbjct: 34677 cagtatgtgaaaacattgattt 34656
>gb|AC092764.3| Pan troglodytes clone RP43-37J6, complete sequence Length = 172761 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 373 cagtatgtgaaaacattgattt 394 |||||||||||||||||||||| Sbjct: 103152 cagtatgtgaaaacattgattt 103173
>gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosome 16, complete sequence Length = 178155 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 tcatttcatagcttcaagacaaaca 184 |||||||||||||| |||||||||| Sbjct: 92158 tcatttcatagcttaaagacaaaca 92182
>gb|AC021723.11| Homo sapiens chromosome 11, clone RP11-313M3, complete sequence Length = 166447 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 atttcatagcttcaagacaaa 182 ||||||||||||||||||||| Sbjct: 139047 atttcatagcttcaagacaaa 139027
>gb|AC009866.6| Homo sapiens chromosome 11, clone RP11-61E7, complete sequence Length = 177564 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 atttcatagcttcaagacaaa 182 ||||||||||||||||||||| Sbjct: 5608 atttcatagcttcaagacaaa 5588
>gb|AC150034.2| Mus musculus BAC clone RP23-428H16 from 16, complete sequence Length = 187989 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 tcatttcatagcttcaagacaaaca 184 |||||||||||||| |||||||||| Sbjct: 186600 tcatttcatagcttaaagacaaaca 186624
>gb|AC114420.11| Mus musculus chromosome 5, clone RP23-375E13, complete sequence Length = 155958 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 cacttcatgttttgggaaat 466 |||||||||||||||||||| Sbjct: 105372 cacttcatgttttgggaaat 105391
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaacattggcacttcatg 455 |||||||||||||||||||| Sbjct: 33318617 gagaacattggcacttcatg 33318598
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaacattggcacttcatg 455 |||||||||||||||||||| Sbjct: 75133 gagaacattggcacttcatg 75114
>gb|AC142096.25| Medicago truncatula clone mth2-6m16, complete sequence Length = 129053 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 caagacaaacacgtataaat 193 |||||||||||||||||||| Sbjct: 117809 caagacaaacacgtataaat 117790
>gb|AC142507.13| Medicago truncatula clone mth2-30h19, complete sequence Length = 117666 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 caagacaaacacgtataaat 193 |||||||||||||||||||| Sbjct: 33850 caagacaaacacgtataaat 33869
>emb|AL138733.15| Human DNA sequence from clone RP1-297M16 on chromosome 6 Contains part of a novel gene and a novel gene, complete sequence Length = 65582 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcaaccaggaccagaagctt 54 |||||||||||||||||||| Sbjct: 44713 gcaaccaggaccagaagctt 44732
>gb|AC138565.3| Gallus gallus clone TAM31-10L3, complete sequence Length = 174604 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 cttttcaataaacatctcgatcag 375 ||||| |||||||||||||||||| Sbjct: 151579 cttttaaataaacatctcgatcag 151602
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaacattggcacttcatg 455 |||||||||||||||||||| Sbjct: 33409127 gagaacattggcacttcatg 33409108
>gb|AF134552.1|AF134552 Oryza sativa subsp. indica serine/threonine protein phosphatase PP2A-2 catalytic subunit (Pp2A) gene, complete cds Length = 5750 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaacattggcacttcatg 455 |||||||||||||||||||| Sbjct: 1418 gagaacattggcacttcatg 1399
>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete sequence Length = 158575 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ttcggactcctcttctccct 77 |||||||||||||||||||| Sbjct: 81509 ttcggactcctcttctccct 81490
>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence Length = 208781 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ttcggactcctcttctccct 77 |||||||||||||||||||| Sbjct: 111039 ttcggactcctcttctccct 111020 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,755,489 Number of Sequences: 3902068 Number of extensions: 3755489 Number of successful extensions: 83990 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83870 Number of HSP's gapped (non-prelim): 119 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)