Clone Name | baal9m23 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1769 Score = 504 bits (254), Expect = e-139 Identities = 380/422 (90%) Strand = Plus / Plus Query: 14 tccgcctcgcccttcgacgagctctacgcgcggggaaggcccatcgacggcgcctccaag 73 ||||| ||||||||||||||||||||||||||||| |||||| | | ||| |||||||| Sbjct: 306 tccgcgtcgcccttcgacgagctctacgcgcgggggaggcccgcccatggctcctccaag 365 Query: 74 aaatctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattcag 133 ||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 366 aaatctatcctatggaacttgatccaagacatagagcctttggatctaagtgtcattcag 425 Query: 134 aaagatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgggc 193 ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 426 aaagatgttcctcctgaaacagttgatgcaatgaagaggactatctctggcatgttgggc 485 Query: 194 ctacttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttcaag 253 || |||||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 486 ctgcttccatcagatcagttccgtgttgttgtagaagccctttggaatcccttcttcaag 545 Query: 254 ttattggtatcttcaatcatgactgggtatactctacgtaatgctgaatgcaggctctct 313 || |||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||| Sbjct: 546 ttgttggtatcttcaattatgaccgggtatactctgcgtaatgctgaatacaggctctct 605 Query: 314 tttgaaaggaacctagaactttctgaagaagatgctgaatgtgagaaaagagacatgact 373 |||||||| |||||||| ||||| ||||||||| | ||| || | || ||||| || || Sbjct: 606 tttgaaagaaacctagagctttcagaagaagattcggaaggtcaaaatagagatatctct 665 Query: 374 gaagataatcttcatgacatcaatttgggtaggcctattacaattttcagattatcagaa 433 ||||| |||| |||| |||||||||||||||| ||| | ||||||||||||||||| ||| Sbjct: 666 gaagacaatcatcataacatcaatttgggtagccctgtcacaattttcagattatctgaa 725 Query: 434 ga 435 || Sbjct: 726 ga 727 Score = 113 bits (57), Expect = 7e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 504 gtaacttaacaccccaagcggaagagcagattattcggttgcaatctcgtttggatgcga 563 ||||||| ||||| ||||||||||| | || || | ||||| ||||| |||||||| | Sbjct: 796 gtaacttgacacctcaagcggaagattacataatccaattgcagtctcgattggatgcca 855 Query: 564 tgaaaaaggagttacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttg 623 |||||||||| || ||||| || | ||||||||||||||| || |||||||| ||||||| Sbjct: 856 tgaaaaaggaattgcatgatcttaggaggaaaaattctgctctgcaaatgcagcagtttg 915 Query: 624 ttggggaagagaaaaatgatctgctagactatc 656 |||| ||||| ||||||||| |||| ||||||| Sbjct: 916 ttggagaagaaaaaaatgatttgctggactatc 948
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete sequence Length = 157397 Score = 309 bits (156), Expect = 6e-81 Identities = 198/212 (93%) Strand = Plus / Minus Query: 72 agaaatctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattc 131 ||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 30996 agaaatctatcctatggaacttgatccaagacatagagcctttggatctaagtgtcattc 30937 Query: 132 agaaagatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgg 191 ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 30936 agaaagatgttcctcctgaaacagttgatgcaatgaagaggactatctctggcatgttgg 30877 Query: 192 gcctacttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttca 251 |||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 30876 gcctgcttccatcagatcagttccgtgttgttgtagaagccctttggaatcccttcttca 30817 Query: 252 agttattggtatcttcaatcatgactgggtat 283 |||| |||||||||||||| ||||| |||||| Sbjct: 30816 agttgttggtatcttcaattatgaccgggtat 30785 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Minus Query: 279 ggtatactctacgtaatgctgaatgcaggctctcttttgaaaggaacctagaactttctg 338 |||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||| | Sbjct: 29808 ggtatactctgcgtaatgctgaatacaggctctcttttgaaagaaacctagagctttcag 29749 Query: 339 aagaagatgctgaatgtgagaaaagagacatgactgaagataatcttcatgacatcaatt 398 |||||||| | ||| || | || ||||| || ||||||| |||| |||| ||||||||| Sbjct: 29748 aagaagattcggaaggtcaaaatagagatatctctgaagacaatcatcataacatcaatt 29689 Query: 399 tgggtaggcctattacaattttcagattatcagaaga 435 ||||||| ||| | ||||||||||||||||| ||||| Sbjct: 29688 tgggtagccctgtcacaattttcagattatctgaaga 29652 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 589 gaggaaaaattctgcccttcaaatgcaacagtttgttggggaagagaaaaatgatctgct 648 ||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 28451 gaggaaaaattctgctctgcaaatgcagcagtttgttggagaagaaaaaaatgatttgct 28392 Query: 649 agactatc 656 ||||||| Sbjct: 28391 ggactatc 28384 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 14 tccgcctcgcccttcgacgagctctacgcgcggggaaggccc 55 ||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 32540 tccgcgtcgcccttcgacgagctctacgcgcgggggaggccc 32499 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 504 gtaacttaacaccccaagcggaagagcagattattcggttgcaatctcgtttggatgcga 563 ||||||| ||||| ||||||||||| | || || | ||||| ||||| |||||||| | Sbjct: 29583 gtaacttgacacctcaagcggaagattacataatccaattgcagtctcgattggatgcca 29524 Query: 564 tgaaaaagg 572 ||||||||| Sbjct: 29523 tgaaaaagg 29515
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 309 bits (156), Expect = 6e-81 Identities = 198/212 (93%) Strand = Plus / Plus Query: 72 agaaatctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattc 131 ||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 22637150 agaaatctatcctatggaacttgatccaagacatagagcctttggatctaagtgtcattc 22637209 Query: 132 agaaagatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgg 191 ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 22637210 agaaagatgttcctcctgaaacagttgatgcaatgaagaggactatctctggcatgttgg 22637269 Query: 192 gcctacttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttca 251 |||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 22637270 gcctgcttccatcagatcagttccgtgttgttgtagaagccctttggaatcccttcttca 22637329 Query: 252 agttattggtatcttcaatcatgactgggtat 283 |||| |||||||||||||| ||||| |||||| Sbjct: 22637330 agttgttggtatcttcaattatgaccgggtat 22637361 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 279 ggtatactctacgtaatgctgaatgcaggctctcttttgaaaggaacctagaactttctg 338 |||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||| | Sbjct: 22638338 ggtatactctgcgtaatgctgaatacaggctctcttttgaaagaaacctagagctttcag 22638397 Query: 339 aagaagatgctgaatgtgagaaaagagacatgactgaagataatcttcatgacatcaatt 398 |||||||| | ||| || | || ||||| || ||||||| |||| |||| ||||||||| Sbjct: 22638398 aagaagattcggaaggtcaaaatagagatatctctgaagacaatcatcataacatcaatt 22638457 Query: 399 tgggtaggcctattacaattttcagattatcagaaga 435 ||||||| ||| | ||||||||||||||||| ||||| Sbjct: 22638458 tgggtagccctgtcacaattttcagattatctgaaga 22638494 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 589 gaggaaaaattctgcccttcaaatgcaacagtttgttggggaagagaaaaatgatctgct 648 ||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 22639695 gaggaaaaattctgctctgcaaatgcagcagtttgttggagaagaaaaaaatgatttgct 22639754 Query: 649 agactatc 656 ||||||| Sbjct: 22639755 ggactatc 22639762 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 14 tccgcctcgcccttcgacgagctctacgcgcggggaaggccc 55 ||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 22635606 tccgcgtcgcccttcgacgagctctacgcgcgggggaggccc 22635647 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Plus Query: 504 gtaacttaacaccccaagcggaagagcagattattcggttgcaatctcgtttggatgcga 563 ||||||| ||||| ||||||||||| | || || | ||||| ||||| |||||||| | Sbjct: 22638563 gtaacttgacacctcaagcggaagattacataatccaattgcagtctcgattggatgcca 22638622 Query: 564 tgaaaaagg 572 ||||||||| Sbjct: 22638623 tgaaaaagg 22638631
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 309 bits (156), Expect = 6e-81 Identities = 198/212 (93%) Strand = Plus / Plus Query: 72 agaaatctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattc 131 ||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 22630179 agaaatctatcctatggaacttgatccaagacatagagcctttggatctaagtgtcattc 22630238 Query: 132 agaaagatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgg 191 ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 22630239 agaaagatgttcctcctgaaacagttgatgcaatgaagaggactatctctggcatgttgg 22630298 Query: 192 gcctacttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttca 251 |||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 22630299 gcctgcttccatcagatcagttccgtgttgttgtagaagccctttggaatcccttcttca 22630358 Query: 252 agttattggtatcttcaatcatgactgggtat 283 |||| |||||||||||||| ||||| |||||| Sbjct: 22630359 agttgttggtatcttcaattatgaccgggtat 22630390 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 279 ggtatactctacgtaatgctgaatgcaggctctcttttgaaaggaacctagaactttctg 338 |||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||| | Sbjct: 22631367 ggtatactctgcgtaatgctgaatacaggctctcttttgaaagaaacctagagctttcag 22631426 Query: 339 aagaagatgctgaatgtgagaaaagagacatgactgaagataatcttcatgacatcaatt 398 |||||||| | ||| || | || ||||| || ||||||| |||| |||| ||||||||| Sbjct: 22631427 aagaagattcggaaggtcaaaatagagatatctctgaagacaatcatcataacatcaatt 22631486 Query: 399 tgggtaggcctattacaattttcagattatcagaaga 435 ||||||| ||| | ||||||||||||||||| ||||| Sbjct: 22631487 tgggtagccctgtcacaattttcagattatctgaaga 22631523 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 589 gaggaaaaattctgcccttcaaatgcaacagtttgttggggaagagaaaaatgatctgct 648 ||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 22632724 gaggaaaaattctgctctgcaaatgcagcagtttgttggagaagaaaaaaatgatttgct 22632783 Query: 649 agactatc 656 ||||||| Sbjct: 22632784 ggactatc 22632791 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 14 tccgcctcgcccttcgacgagctctacgcgcggggaaggccc 55 ||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 22628635 tccgcgtcgcccttcgacgagctctacgcgcgggggaggccc 22628676 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Plus Query: 504 gtaacttaacaccccaagcggaagagcagattattcggttgcaatctcgtttggatgcga 563 ||||||| ||||| ||||||||||| | || || | ||||| ||||| |||||||| | Sbjct: 22631592 gtaacttgacacctcaagcggaagattacataatccaattgcagtctcgattggatgcca 22631651 Query: 564 tgaaaaagg 572 ||||||||| Sbjct: 22631652 tgaaaaagg 22631660
>gb|AY107995.1| Zea mays PCO124424 mRNA sequence Length = 423 Score = 240 bits (121), Expect = 5e-60 Identities = 235/272 (86%), Gaps = 1/272 (0%) Strand = Plus / Plus Query: 14 tccgcctcgcccttcgacgagctctacgcgcggggaaggcccatcg-acggcgcctccaa 72 ||||| ||||||||||||||||| |||| ||||| |||||| | | || ||||||| Sbjct: 31 tccgcgtcgcccttcgacgagctgcacgcacgggggaggcccgtnacatggaccctccaa 90 Query: 73 gaaatctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattca 132 |||||| | || ||||| |||||||| || |||||||| ||||| || |||||||| || Sbjct: 91 gaaatccatgctctggaacttgatccaggatatagagcccttggacctaagtgtcatcca 150 Query: 133 gaaagatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttggg 192 |||||||||| ||| |||||| || ||||||||||||||||| || |||||||||||||| Sbjct: 151 gaaagatgttgctcctgaaacagtagatgcaatgaagaggactatttctggcatgttggg 210 Query: 193 cctacttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttcaa 252 || |||||||| |||||||||||||| |||||||||||||||||||||| || ||||| Sbjct: 211 tcttcttccatctgatcagttccgtgtcattgtagaagccctttggaatcccttcttcaa 270 Query: 253 gttattggtatcttcaatcatgactgggtata 284 |||||||||||||||||| ||||||||||||| Sbjct: 271 gttattggtatcttcaattatgactgggtata 302
>dbj|AK111563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066M24, full insert sequence Length = 1789 Score = 149 bits (75), Expect = 1e-32 Identities = 177/211 (83%) Strand = Plus / Plus Query: 76 atctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattcagaa 135 |||| |||| ||||| ||||| |||||||||| ||||||||||| || | || || || Sbjct: 360 atctgccctttggaacttgataaaagacatagaacctttggatctaagcataatccaaaa 419 Query: 136 agatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgggcct 195 |||||||||| |||||| || ||||||||||||||||| | || |||||||||||||| Sbjct: 420 agatgttccttctgaaactgtggatgcaatgaagaggactgtttcaggcatgttgggcct 479 Query: 196 acttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttcaagtt 255 ||||||||||||||||||| ||| || |||| ||||||||||||| || |||||| | Sbjct: 480 tcttccatccgatcagttccatgtggtcatagagtccctttggaatcctttcttcaagct 539 Query: 256 attggtatcttcaatcatgactgggtatact 286 |||| ||||||||| ||||| ||||||||| Sbjct: 540 gttggcatcttcaataatgacagggtatact 570 Score = 75.8 bits (38), Expect = 2e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 543 tgcaatctcgtttggatgcgatgaaaaaggagttacatgacctgaagaggaaaaattctg 602 |||||||||| |||||| | ||| |||||||| ||||||| || |||| |||||||||| Sbjct: 815 tgcaatctcgcttggattccatggaaaaggagctacatgaacttaagaagaaaaattctt 874 Query: 603 cccttcaaatgcaacagtttgttggggaagagaaaaatgatctgct 648 ||| |||||||| || |||| ||| ||||||||||| || ||||| Sbjct: 875 cccaacaaatgcagcaatttgctggagaagagaaaaacgagctgct 920
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 143 bits (72), Expect = 8e-31 Identities = 174/208 (83%) Strand = Plus / Plus Query: 76 atctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattcagaa 135 |||| |||| ||||| ||||| |||||||||| ||||||||||| || | || || || Sbjct: 24172454 atctgccctttggaacttgataaaagacatagaacctttggatctaagcataatccaaaa 24172513 Query: 136 agatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgggcct 195 |||||||||| |||||| || ||||||||||||||||| | || |||||||||||||| Sbjct: 24172514 agatgttccttctgaaactgtggatgcaatgaagaggactgtttcaggcatgttgggcct 24172573 Query: 196 acttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttcaagtt 255 ||||||||||||||||||| ||| || |||| ||||||||||||| || |||||| | Sbjct: 24172574 tcttccatccgatcagttccatgtggtcatagagtccctttggaatcctttcttcaagct 24172633 Query: 256 attggtatcttcaatcatgactgggtat 283 |||| ||||||||| ||||| |||||| Sbjct: 24172634 gttggcatcttcaataatgacagggtat 24172661 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 570 aggagttacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttgttgggg 629 ||||| ||||||| || |||| |||||||||| ||| |||||||| || |||| ||| | Sbjct: 24174212 aggagctacatgaacttaagaagaaaaattcttcccaacaaatgcagcaatttgctggag 24174271 Query: 630 aagagaaaaatgatctgct 648 |||||||||| || ||||| Sbjct: 24174272 aagagaaaaacgagctgct 24174290
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 143 bits (72), Expect = 8e-31 Identities = 174/208 (83%) Strand = Plus / Plus Query: 76 atctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattcagaa 135 |||| |||| ||||| ||||| |||||||||| ||||||||||| || | || || || Sbjct: 24100660 atctgccctttggaacttgataaaagacatagaacctttggatctaagcataatccaaaa 24100719 Query: 136 agatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgggcct 195 |||||||||| |||||| || ||||||||||||||||| | || |||||||||||||| Sbjct: 24100720 agatgttccttctgaaactgtggatgcaatgaagaggactgtttcaggcatgttgggcct 24100779 Query: 196 acttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttcaagtt 255 ||||||||||||||||||| ||| || |||| ||||||||||||| || |||||| | Sbjct: 24100780 tcttccatccgatcagttccatgtggtcatagagtccctttggaatcctttcttcaagct 24100839 Query: 256 attggtatcttcaatcatgactgggtat 283 |||| ||||||||| ||||| |||||| Sbjct: 24100840 gttggcatcttcaataatgacagggtat 24100867 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 570 aggagttacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttgttgggg 629 ||||| ||||||| || |||| |||||||||| ||| |||||||| || |||| ||| | Sbjct: 24102418 aggagctacatgaacttaagaagaaaaattcttcccaacaaatgcagcaatttgctggag 24102477 Query: 630 aagagaaaaatgatctgct 648 |||||||||| || ||||| Sbjct: 24102478 aagagaaaaacgagctgct 24102496
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 143 bits (72), Expect = 8e-31 Identities = 174/208 (83%) Strand = Plus / Plus Query: 76 atctaccctgtggaatttgatccaagacatagagcctttggatcttagtgtcattcagaa 135 |||| |||| ||||| ||||| |||||||||| ||||||||||| || | || || || Sbjct: 57145 atctgccctttggaacttgataaaagacatagaacctttggatctaagcataatccaaaa 57204 Query: 136 agatgttcctcttgaaacggttgatgcaatgaagaggaccatctctggcatgttgggcct 195 |||||||||| |||||| || ||||||||||||||||| | || |||||||||||||| Sbjct: 57205 agatgttccttctgaaactgtggatgcaatgaagaggactgtttcaggcatgttgggcct 57264 Query: 196 acttccatccgatcagttccgtgttgttgtagaagccctttggaatccatttttcaagtt 255 ||||||||||||||||||| ||| || |||| ||||||||||||| || |||||| | Sbjct: 57265 tcttccatccgatcagttccatgtggtcatagagtccctttggaatcctttcttcaagct 57324 Query: 256 attggtatcttcaatcatgactgggtat 283 |||| ||||||||| ||||| |||||| Sbjct: 57325 gttggcatcttcaataatgacagggtat 57352 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 570 aggagttacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttgttgggg 629 ||||| ||||||| || |||| |||||||||| ||| |||||||| || |||| ||| | Sbjct: 58903 aggagctacatgaacttaagaagaaaaattcttcccaacaaatgcagcaatttgctggag 58962 Query: 630 aagagaaaaatgatctgct 648 |||||||||| || ||||| Sbjct: 58963 aagagaaaaacgagctgct 58981
>dbj|AK059397.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A10, full insert sequence Length = 837 Score = 113 bits (57), Expect = 7e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 504 gtaacttaacaccccaagcggaagagcagattattcggttgcaatctcgtttggatgcga 563 ||||||| ||||| ||||||||||| | || || | ||||| ||||| |||||||| | Sbjct: 8 gtaacttgacacctcaagcggaagattacataatccaattgcagtctcgattggatgcca 67 Query: 564 tgaaaaaggagttacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttg 623 |||||||||| || ||||| || | ||||||||||||||| || |||||||| ||||||| Sbjct: 68 tgaaaaaggaattgcatgatcttaggaggaaaaattctgctctgcaaatgcagcagtttg 127 Query: 624 ttggggaagagaaaaatgatctgctagactatc 656 |||| ||||| ||||||||| |||| ||||||| Sbjct: 128 ttggagaagaaaaaaatgatttgctggactatc 160
>gb|AY105239.1| Zea mays PCO124426 mRNA sequence Length = 945 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Plus Query: 507 acttaacaccccaagcggaagagcagattattcggttgcaatctcgtttggatgcgatga 566 |||||||||| || || || ||| | ||||||| | ||||||||| |||| |||| |||| Sbjct: 12 acttaacaccacaggcagaggagtatattattcagatgcaatctcatttgaatgccatga 71 Query: 567 aaaaggagttacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttgttg 626 |||||||||||||||| || | ||| || ||||||||| | || ||||| |||||||||| Sbjct: 72 aaaaggagttacatgatctcaggagaaagaattctgccttacagatgcagcagtttgttg 131 Query: 627 gggaagagaaaaa 639 |||| || ||||| Sbjct: 132 gggaggaaaaaaa 144
>gb|AF116752.1|AF116752 Glycine max seed maturation protein PM23 (PM23) mRNA, partial cds Length = 1633 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 542 ttgcaatctcgtttggatgcgatgaaaaaggagttacatgacctgaagaggaaaaattct 601 ||||||||||||||| | | |||||||||||| | ||||| | |||||||||| | || Sbjct: 715 ttgcaatctcgtttgtcttctatgaaaaaggagctgcatgaagtaaagaggaaaagtgct 774 Query: 602 gcccttcaaatgcaacagtttgttggggaaga 633 || ||||||||||||||||||||||| ||||| Sbjct: 775 gctcttcaaatgcaacagtttgttggagaaga 806 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 250 caagttattggtatcttcaatcatgactgggtatactctacgtaatgctgaat 302 ||||||| || | |||||||| |||||||||||||| ||||| |||| ||||| Sbjct: 435 caagttactgatttcttcaatgatgactgggtatacactacggaatgttgaat 487
>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200, complete sequence Length = 91393 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 585 tgaagaggaaaaattctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 |||||||||||||| |||| ||||||||||||||||||||||| ||||| || |||||| Sbjct: 34510 tgaagaggaaaaatgctgctcttcaaatgcaacagtttgttggagaagaaaagaatgat 34568
>dbj|AK060866.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H02, full insert sequence Length = 1035 Score = 75.8 bits (38), Expect = 2e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 543 tgcaatctcgtttggatgcgatgaaaaaggagttacatgacctgaagaggaaaaattctg 602 |||||||||| |||||| | ||| |||||||| ||||||| || |||| |||||||||| Sbjct: 84 tgcaatctcgcttggattccatggaaaaggagctacatgaacttaagaagaaaaattctt 143 Query: 603 cccttcaaatgcaacagtttgttggggaagagaaaaatgatctgct 648 ||| |||||||| || |||| ||| ||||||||||| || ||||| Sbjct: 144 cccaacaaatgcagcaatttgctggagaagagaaaaacgagctgct 189
>ref|NM_127055.3| Arabidopsis thaliana unknown protein AT2G14910 transcript variant AT2G14910.1 mRNA, complete cds Length = 1779 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 868 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 911 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 552 ttggtatcttcaatgatgactgggtatac 580 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 453 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 499
>ref|NM_201735.1| Arabidopsis thaliana unknown protein AT2G14910 transcript variant AT2G14910.2 mRNA, complete cds Length = 1957 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 868 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 911 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 552 ttggtatcttcaatgatgactgggtatac 580 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 453 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 499
>gb|AY096503.1| Arabidopsis thaliana unknown protein (At2g14910) mRNA, complete cds Length = 1192 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 731 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 774 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 415 ttggtatcttcaatgatgactgggtatac 443 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 316 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 362
>gb|AY063898.1| Arabidopsis thaliana unknown protein (At2g14910) mRNA, complete cds Length = 1562 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 813 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 856 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 497 ttggtatcttcaatgatgactgggtatac 525 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 398 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 444
>gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I20 map mi398, complete sequence Length = 85214 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 28154 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 28111 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 257 ttggtatcttcaatcatgactgggtatactct 288 |||||||||||||| |||||||||||| |||| Sbjct: 29093 ttggtatcttcaatgatgactgggtatgctct 29062 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 29192 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 29146
>gb|AY081268.1| Arabidopsis thaliana unknown protein (At2g14910) mRNA, complete cds Length = 1476 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 761 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 804 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 445 ttggtatcttcaatgatgactgggtatac 473 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 346 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 392
>emb|BX820992.1|CNS0A9MG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1491 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 796 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 839 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 480 ttggtatcttcaatgatgactgggtatac 508 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 381 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 427
>emb|BX819343.1|CNS0A9QR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB70ZB06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1377 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 666 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 709 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 350 ttggtatcttcaatgatgactgggtatac 378 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 251 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 297
>emb|BX819440.1|CNS0A82V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZA05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1659 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 600 ctgcccttcaaatgcaacagtttgttggggaagagaaaaatgat 643 ||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 815 ctgccctacaaatgcaacaatttgttggcgaagagaagaatgat 858 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 257 ttggtatcttcaatcatgactgggtatac 285 |||||||||||||| |||||||||||||| Sbjct: 499 ttggtatcttcaatgatgactgggtatac 527 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 158 gatgcaatgaagaggaccatctctggcatgttgggcctacttccatc 204 ||||||||||| || || ||||| ||||||||||| || |||||||| Sbjct: 400 gatgcaatgaaaagaacaatctcaggcatgttgggtcttcttccatc 446
>gb|BT013983.1| Lycopersicon esculentum clone 133028F, mRNA sequence Length = 1677 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 263 tcttcaatcatgactgggtatactctacgtaatgctgaatgcaggct 309 |||||||| |||||||||||||| ||||| |||||||| | |||||| Sbjct: 498 tcttcaatgatgactgggtatacactacggaatgctgagtacaggct 544 Score = 44.1 bits (22), Expect = 0.57 Identities = 49/58 (84%) Strand = Plus / Plus Query: 156 ttgatgcaatgaagaggaccatctctggcatgttgggcctacttccatccgatcagtt 213 ||||||||||||| || || || || |||||||||||| | |||||||| || ||||| Sbjct: 391 ttgatgcaatgaaaagaactatatcaggcatgttgggcttgcttccatcagaccagtt 448
>dbj|AK073739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065N21, full insert sequence Length = 950 Score = 50.1 bits (25), Expect = 0.009 Identities = 61/73 (83%) Strand = Plus / Plus Query: 576 tacatgacctgaagaggaaaaattctgcccttcaaatgcaacagtttgttggggaagaga 635 ||||||| || |||| |||||||||| ||| |||||||| || |||| ||| ||||||| Sbjct: 6 tacatgaacttaagaagaaaaattcttcccaacaaatgcagcaatttgctggagaagaga 65 Query: 636 aaaatgatctgct 648 |||| || ||||| Sbjct: 66 aaaacgagctgct 78
>ref|XM_509928.1| PREDICTED: Pan troglodytes similar to KIAA1596 protein (LOC452885), mRNA Length = 4227 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 2562 agaactttctgaagaagatgcagaat 2587
>ref|NM_020937.1| Homo sapiens Fanconi anemia, complementation group M (FANCM), mRNA Length = 7143 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 4648 agaactttctgaagaagatgcagaat 4673
>gb|DQ140356.1| Homo sapiens Fanconi anemia complementation group M (FANCM) mRNA, complete cds Length = 7143 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 4648 agaactttctgaagaagatgcagaat 4673
>emb|AL445243.3| Human DNA sequence from clone RP11-538C21 on chromosome 13 Contains a novel gene, complete sequence Length = 150937 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 agaaatgttaagtaacttaaca 514 |||||||||||||||||||||| Sbjct: 28818 agaaatgttaagtaacttaaca 28839
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 tagaactttctgaagaagatgc 348 |||||||||||||||||||||| Sbjct: 324806 tagaactttctgaagaagatgc 324785
>dbj|AK001672.1| Homo sapiens cDNA FLJ10810 fis, clone NT2RP4000929, weakly similar to PUTATIVE ATP-DEPENDENT RNA HELICASE MJ1505 Length = 3116 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 1345 agaactttctgaagaagatgcagaat 1370
>gb|AC122431.4| Mus musculus BAC clone RP24-176L8 from 6, complete sequence Length = 156005 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 atgctgaatgcaggctctcttt 315 |||||||||||||||||||||| Sbjct: 50005 atgctgaatgcaggctctcttt 50026
>emb|AL121809.6|CNS01DSK Human chromosome 14 DNA sequence BAC C-3028N15 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 213442 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 75075 agaactttctgaagaagatgcagaat 75050
>emb|AL833656.1|HSM804969 Homo sapiens mRNA; cDNA DKFZp667P1220 (from clone DKFZp667P1220) Length = 5593 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 3096 agaactttctgaagaagatgcagaat 3121
>dbj|AB046816.1| Homo sapiens mRNA for KIAA1596 protein, partial cds Length = 4696 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 agaactttctgaagaagatgctgaat 353 ||||||||||||||||||||| |||| Sbjct: 2221 agaactttctgaagaagatgcagaat 2246
>emb|AL357712.10| Human DNA sequence from clone GS1-756B1 on chromosome 10 Contains a novel pseudogene (FLJ34719 FLJ14936) and the 3' end of a novel gene, complete sequence Length = 110645 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 gagaaaagagacatgactgaa 376 ||||||||||||||||||||| Sbjct: 101739 gagaaaagagacatgactgaa 101719
>emb|AL133377.10| Human DNA sequence from clone RP1-295F6 on chromosome 6 Contains the 3' end of the TEX27 gene for testis expressed sequence 27 (FLJ13222) and a novel gene, complete sequence Length = 69663 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gccccaggactctggaaaaag 462 ||||||||||||||||||||| Sbjct: 55177 gccccaggactctggaaaaag 55157
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16 Length = 349260 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 ggcggccgcctccgcctcgcc 24 ||||||||||||||||||||| Sbjct: 193510 ggcggccgcctccgcctcgcc 193490
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 92517 gcggccgcctccgcctcgccc 92537 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 92314 gcggccgcctccgcctcgccc 92334 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 92155 gcggccgcctccgcctcgccc 92175
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 35137 gcggccgcctccgcctcgccc 35157 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 34934 gcggccgcctccgcctcgccc 34954 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 34775 gcggccgcctccgcctcgccc 34795
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 25308578 gcggccgcctccgcctcgccc 25308598 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 25308375 gcggccgcctccgcctcgccc 25308395 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcggccgcctccgcctcgccc 25 ||||||||||||||||||||| Sbjct: 25308216 gcggccgcctccgcctcgccc 25308236
>gb|AC153890.8| Mus musculus BAC RP23-403C13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202932 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gaagaagatgctgaatgtgag 358 ||||||||||||||||||||| Sbjct: 147115 gaagaagatgctgaatgtgag 147135
>dbj|AP005403.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-183C12, complete sequence Length = 155133 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 ctattacaattttcagattat 428 ||||||||||||||||||||| Sbjct: 51009 ctattacaattttcagattat 51029
>gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, complete sequence Length = 185681 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aacctagaactttctgaaga 342 |||||||||||||||||||| Sbjct: 3833 aacctagaactttctgaaga 3852
>gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosome 18, complete sequence Length = 186798 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 aatgcaggctctcttttgaa 319 |||||||||||||||||||| Sbjct: 121888 aatgcaggctctcttttgaa 121869
>gb|AC109992.6| Homo sapiens 3 BAC RP11-383G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112544 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttgaaaggaacctagaactt 334 |||||||||||||||||||| Sbjct: 87883 ttgaaaggaacctagaactt 87864
>emb|CR381538.9| Zebrafish DNA sequence from clone CH211-87B12 in linkage group 1, complete sequence Length = 169036 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 aatgtgagaaaagagacatg 370 |||||||||||||||||||| Sbjct: 90423 aatgtgagaaaagagacatg 90442
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aatccatttttcaagttatt 258 |||||||||||||||||||| Sbjct: 127126 aatccatttttcaagttatt 127145
>gb|AC092933.21| Homo sapiens 3 BAC RP11-200I19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137227 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 agaaatgttaagtaacttaa 512 |||||||||||||||||||| Sbjct: 64744 agaaatgttaagtaacttaa 64725
>emb|Y00354.1|XLVIT2A Xenopus laevis gene encoding vitellogenin A2 Length = 18488 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 agaactttctgaagaagatg 347 |||||||||||||||||||| Sbjct: 13050 agaactttctgaagaagatg 13031
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence Length = 205629 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aatgcaggctctcttttgaa 319 |||||||||||||||||||| Sbjct: 147002 aatgcaggctctcttttgaa 147021
>gb|AC161929.4| Mus musculus chromosome 7, clone RP23-120D7, complete sequence Length = 193326 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aacctagaactttctgaaga 342 |||||||||||||||||||| Sbjct: 57170 aacctagaactttctgaaga 57189
>emb|BX546452.9| Zebrafish DNA sequence from clone DKEYP-8B11 in linkage group 25, complete sequence Length = 170113 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 attttcagattatcagaaga 435 |||||||||||||||||||| Sbjct: 98294 attttcagattatcagaaga 98313
>gb|AE005948.1| Caulobacter crescentus CB15 section 274 of 359 of the complete genome Length = 13101 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcgcccttcgacgagctc 37 |||||||||||||||||||| Sbjct: 1714 cctcgcccttcgacgagctc 1733
>gb|AE005862.1| Caulobacter crescentus CB15 section 188 of 359 of the complete genome Length = 10016 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcgcccttcgacgagctc 37 |||||||||||||||||||| Sbjct: 69 cctcgcccttcgacgagctc 50
>gb|AE005700.1| Caulobacter crescentus CB15 section 26 of 359 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tccgcctcgcccttcgacgagctc 37 |||||||||||||||||| ||||| Sbjct: 6737 tccgcctcgcccttcgacaagctc 6714
>gb|AC022743.7| Homo sapiens chromosome 18, clone RP11-789C7, complete sequence Length = 182466 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 gagaaatgttaagtaactta 511 |||||||||||||||||||| Sbjct: 81529 gagaaatgttaagtaactta 81548
>gb|AC103842.2| Homo sapiens chromosome 8, clone RP11-367J23, complete sequence Length = 150506 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 ttttcagattatcagaagac 436 |||||||||||||||||||| Sbjct: 66053 ttttcagattatcagaagac 66034
>gb|AC091914.3| Homo sapiens chromosome 5 clone RP11-221N1, complete sequence Length = 165237 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 aaaattctgcccttcaaatg 613 |||||||||||||||||||| Sbjct: 108925 aaaattctgcccttcaaatg 108906
>gb|AC073848.4|AC073848 Homo sapiens BAC clone RP11-669M16 from 4, complete sequence Length = 163636 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 atgttcctcttgaaacggtt 157 |||||||||||||||||||| Sbjct: 113725 atgttcctcttgaaacggtt 113706
>emb|BX255889.7| Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17, complete sequence Length = 162918 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 agaaatgttaagtaacttaa 512 |||||||||||||||||||| Sbjct: 120441 agaaatgttaagtaacttaa 120422
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aatccatttttcaagttatt 258 |||||||||||||||||||| Sbjct: 22214172 aatccatttttcaagttatt 22214153
>gb|AY833307.1| Cottus klamathensis polyporus ATPase 8 (ATP8) gene, complete cds; and ATPase 6 (ATP6) gene, partial cds; mitochondrial Length = 841 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 catgttgggcctacttccat 203 |||||||||||||||||||| Sbjct: 410 catgttgggcctacttccat 429
>gb|AY833306.1| Cottus klamathensis macrops ATPase 8 (ATP8) gene, complete cds; and ATPase 6 (ATP6) gene, partial cds; mitochondrial Length = 841 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 catgttgggcctacttccat 203 |||||||||||||||||||| Sbjct: 410 catgttgggcctacttccat 429
>gb|AY833305.1| Cottus klamathensis klamathensis ATPase 8 (ATP8) gene, complete cds; and ATPase 6 (ATP6) gene, partial cds; mitochondrial Length = 841 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 catgttgggcctacttccat 203 |||||||||||||||||||| Sbjct: 410 catgttgggcctacttccat 429
>emb|AL954386.11| Zebrafish DNA sequence from clone CH211-242P18 in linkage group 1, complete sequence Length = 160259 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 aatgtgagaaaagagacatg 370 |||||||||||||||||||| Sbjct: 103289 aatgtgagaaaagagacatg 103308
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cccttcgacgagctctacgc 42 |||||||||||||||||||| Sbjct: 2671080 cccttcgacgagctctacgc 2671061
>gb|AC153957.4| Mus musculus 10 BAC RP24-502B21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182105 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tcattcagaaagatgttcct 145 |||||||||||||||||||| Sbjct: 56433 tcattcagaaagatgttcct 56414
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aatccatttttcaagttatt 258 |||||||||||||||||||| Sbjct: 22524083 aatccatttttcaagttatt 22524064
>emb|AL953881.5| Zebrafish DNA sequence from clone CH211-208N2, complete sequence Length = 201659 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 aatgtgagaaaagagacatg 370 |||||||||||||||||||| Sbjct: 89913 aatgtgagaaaagagacatg 89932
>gb|M18061.1|XELVITC Xenopus laevis vitelloginin gene, complete cds Length = 5618 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 agaactttctgaagaagatg 347 |||||||||||||||||||| Sbjct: 3958 agaactttctgaagaagatg 3939 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,606,181 Number of Sequences: 3902068 Number of extensions: 6606181 Number of successful extensions: 134776 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134084 Number of HSP's gapped (non-prelim): 690 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)