ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chl... 35 0.073
2PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chl... 35 0.073
3PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chl... 33 0.16
4SYI_PROMM (Q7TUN3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 8.9
5LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor ... 28 8.9

>PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 145

 Score = 34.7 bits (78), Expect = 0.073
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 6   KFKCGSNVFWKW 41
           KFKCGSNVFWKW
Sbjct: 134 KFKCGSNVFWKW 145



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>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N) (Fragment)
          Length = 112

 Score = 34.7 bits (78), Expect = 0.073
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 6   KFKCGSNVFWKW 41
           KFKCGSNVFWKW
Sbjct: 101 KFKCGSNVFWKW 112



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>PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 171

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 6   KFKCGSNVFWKW 41
           K+KCGSNVFWKW
Sbjct: 160 KYKCGSNVFWKW 171



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>SYI_PROMM (Q7TUN3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 968

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 98  TSRYSLTDIHQHSPYRPASPFPE 30
           TSRY L ++H   P R A P PE
Sbjct: 690 TSRYLLGNLHDFDPERDAIPVPE 712



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>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF|
           receptor) (LIF-R) (CD118 antigen)
          Length = 1093

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 6   KFKCGSNVFWKW*SWS 53
           + +C S  FWKW  WS
Sbjct: 504 RVRCSSETFWKWSKWS 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,113,683
Number of Sequences: 219361
Number of extensions: 347726
Number of successful extensions: 1094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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