ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4p22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X66428.1|HVPSANMR H.vulgare mRNA PsaN for photosystem I subu... 305 2e-80
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 62 6e-07
3dbj|AK059037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 6e-07
4dbj|AK058774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 6e-07
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 62 6e-07
6emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 62 6e-07
7gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site fla... 60 2e-06
8gb|AF052429.1|AF052429 Zea mays photosystem I complex PsaN subun... 60 2e-06
9gb|AY103702.1| Zea mays PCO139408 mRNA sequence 60 2e-06
10gb|AY233207.1| Vitis vinifera putative photosystem I reaction ce... 50 0.002
11gb|AC008136.4|AC008136 Drosophila melanogaster, chromosome 3R, r... 44 0.13
12gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, r... 44 0.13
13gb|AE003706.5| Drosophila melanogaster chromosome 3R, section 44... 44 0.13
14ref|NM_125800.3| Arabidopsis thaliana PSI-N; calmodulin binding ... 42 0.53
15ref|NM_001037056.1| Arabidopsis thaliana PSI-N; calmodulin bindi... 42 0.53
16gb|AY081594.1| Arabidopsis thaliana photosystem I reaction cente... 42 0.53
17gb|AY062835.1| Arabidopsis thaliana photosystem I reaction centr... 42 0.53
18emb|BX834109.1|CNS0A0GR Arabidopsis thaliana Full-length cDNA Co... 42 0.53
19emb|BX833455.1|CNS0A0LJ Arabidopsis thaliana Full-length cDNA Co... 42 0.53
20emb|BX830459.1|CNS09YUQ Arabidopsis thaliana Full-length cDNA Co... 42 0.53
21emb|BX841638.1|CNS09YLQ Arabidopsis thaliana Full-length cDNA Co... 42 0.53
22dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 0.53
23gb|U32176.1|ATU32176 Arabidopsis thaliana photosystem I PSI-N mR... 42 0.53
24gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 2.1
25gb|DQ124073.1| Coffea arabica clone MN-SSH2-D11 mRNA sequence 40 2.1
26gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 40 2.1
27emb|AL928840.8| Mouse DNA sequence from clone RP24-233J2 on chro... 40 2.1
28emb|AL732450.5| Mouse DNA sequence from clone RP23-190H10 on chr... 40 2.1
29emb|AL591712.18| Mouse DNA sequence from clone RP23-138C10 on ch... 40 2.1
30ref|XM_641352.1| Dictyostelium discoideum hypothetical protein (... 38 8.2
31gb|AF067948.3| Caenorhabditis elegans cosmid T27C4, complete seq... 38 8.2
32gb|BT013274.1| Lycopersicon esculentum clone 134851R, mRNA sequence 38 8.2
33gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cance... 38 8.2
34gb|AC146509.2| Pan troglodytes BAC clone RP43-93E9 from X, compl... 38 8.2
35emb|Z75746.1|HSU221F2 Human DNA sequence from clone LL0XNC01-221... 38 8.2
36emb|AL162376.15| Human DNA sequence from clone RP11-309J13 on ch... 38 8.2
37gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 8.2
38emb|AL592105.14| Zebrafish DNA sequence from clone BUSM1-150L22 ... 38 8.2
39emb|AL591476.7| Zebrafish DNA sequence from clone BUSM1-263J20 i... 38 8.2
40emb|AL591382.3| Zebrafish DNA sequence from clone BUSM1-105L16 i... 38 8.2
41emb|AL161591.2|ATCHRIV87 Arabidopsis thaliana DNA chromosome 4, ... 38 8.2
42emb|AL035601.1|ATF6G17 Arabidopsis thaliana DNA chromosome 4, BA... 38 8.2
43emb|AJ457195.1|UBA457195 Uncultured bacterium partial nirS gene ... 38 8.2
44gb|AY940192.1| Dictyostelium discoideum RNase P protein subunit ... 38 8.2
45gb|AC024153.22| Homo sapiens 12 BAC RP13-359K18 (Roswell Park Ca... 38 8.2
46gb|AC104076.5| Homo sapiens BAC clone RP11-397C2 from 2, complet... 38 8.2
47emb|AL591372.3| Zebrafish DNA sequence from clone BUSM1-178A3 in... 38 8.2
48emb|AL591405.3| Zebrafish DNA sequence from clone BUSM1-125J23 i... 38 8.2
49emb|AL591427.2| Zebrafish DNA sequence from clone BUSM1-219H16 i... 38 8.2
50emb|AL772230.20| Mouse DNA sequence from clone RP23-381K3 on chr... 38 8.2
51gb|AE000512.1| Thermotoga maritima MSB8, complete genome 38 8.2 
>emb|X66428.1|HVPSANMR H.vulgare mRNA PsaN for photosystem I subunit N
          Length = 665

 Score =  305 bits (154), Expect = 2e-80
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaagctggtcgatatggcgagtg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagttcaagtgcgggtccaacgtcttctggaaatggtgaagctggtcgatatggcgagtg 509

                                                                       
Query: 66  ctgatgtatgtcagtcaggctgtacctagatgtccaaactgcacaagtgtttcggctgtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgatgtatgtcagtcaggctgtacctagatgtccaaactgcacaagtgtttcggctgtg 569

                                             
Query: 126 aagtcatcgtctctgtaattttatcatcaagtgg 159
           ||||||||||||||||||||||||||||||||||
Sbjct: 570 aagtcatcgtctctgtaattttatcatcaagtgg 603
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                      
Query: 6       aagttcaagtgcgggtccaacgtcttctggaaatggtga 44
               |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 4506533 aagtacaagtgcggatccaacgtcttctggaaatggtga 4506571
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>dbj|AK059037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C11, full
           insert sequence
          Length = 657

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtga 44
           |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 461 aagtacaagtgcggatccaacgtcttctggaaatggtga 499
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>dbj|AK058774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-A07, full
           insert sequence
          Length = 591

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtga 44
           |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 346 aagtacaagtgcggatccaacgtcttctggaaatggtga 384
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                      
Query: 6       aagttcaagtgcgggtccaacgtcttctggaaatggtga 44
               |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 4506514 aagtacaagtgcggatccaacgtcttctggaaatggtga 4506552
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>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 6     aagttcaagtgcgggtccaacgtcttctggaaatggtga 44
             |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 98245 aagtacaagtgcggatccaacgtcttctggaaatggtga 98207
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>gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site flanking region
           genomic sequence
          Length = 806

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 130 catcgtctctgtaattttatcatcaagtgg 159
           ||||||||||||||||||||||||||||||
Sbjct: 670 catcgtctctgtaattttatcatcaagtgg 699
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>gb|AF052429.1|AF052429 Zea mays photosystem I complex PsaN subunit precursor (psaN) mRNA,
           nuclear gene encoding chloroplast protein, partial cds
          Length = 518

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaagc 47
           |||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 302 aagttcaagtgcggctccaacgttttctggaagtggtgaagc 343
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>gb|AY103702.1| Zea mays PCO139408 mRNA sequence
          Length = 756

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaagc 47
           |||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 517 aagttcaagtgcggctccaacgttttctggaagtggtgaagc 558
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>gb|AY233207.1| Vitis vinifera putative photosystem I reaction center subunit N
           precursor (PsaN) mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 359

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 221 aagtacaagtgcggttccaatgttttctggaaatggtgaag 261
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>gb|AC008136.4|AC008136 Drosophila melanogaster, chromosome 3R, region 88D-88E, BAC clone
              BACR08H11, complete sequence
          Length = 154890

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     ctggaaatggtgaagctggtcg 53
              ||||||||||||||||||||||
Sbjct: 139243 ctggaaatggtgaagctggtcg 139222
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>gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone
              BACR48E23, complete sequence
          Length = 203183

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     ctggaaatggtgaagctggtcg 53
              ||||||||||||||||||||||
Sbjct: 116862 ctggaaatggtgaagctggtcg 116841
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>gb|AE003706.5| Drosophila melanogaster chromosome 3R, section 44 of 118 of the complete
              sequence
          Length = 270961

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     ctggaaatggtgaagctggtcg 53
              ||||||||||||||||||||||
Sbjct: 253389 ctggaaatggtgaagctggtcg 253368
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>ref|NM_125800.3| Arabidopsis thaliana PSI-N; calmodulin binding AT5G64040 (PSI-N)
           transcript variant AT5G64040.1 mRNA, complete cds
          Length = 747

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 573 aagtacaagtgtggttccaatgttttctggaaatggtgaag 613
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>ref|NM_001037056.1| Arabidopsis thaliana PSI-N; calmodulin binding AT5G64040 (PSI-N)
           transcript variant AT5G64040.2 mRNA, complete cds
          Length = 950

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 776 aagtacaagtgtggttccaatgttttctggaaatggtgaag 816
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>gb|AY081594.1| Arabidopsis thaliana photosystem I reaction center subunit psaN
           precursor (At5g64040) mRNA, complete cds
          Length = 605

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 478 aagtacaagtgtggttccaatgttttctggaaatggtgaag 518
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>gb|AY062835.1| Arabidopsis thaliana photosystem I reaction centre subunit psaN
           precursor (At5g64040; MHJ24.2) mRNA, complete cds
          Length = 685

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 534 aagtacaagtgtggttccaatgttttctggaaatggtgaag 574
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>emb|BX834109.1|CNS0A0GR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL9ZF02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 650

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 485 aagtacaagtgtggttccaatgttttctggaaatggtgaag 525
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>emb|BX833455.1|CNS0A0LJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL56ZH04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 647

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 526 aagtacaagtgtggttccaatgttttctggaaatggtgaag 566
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>emb|BX830459.1|CNS09YUQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB83ZA11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 639

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 512 aagtacaagtgtggttccaatgttttctggaaatggtgaag 552
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>emb|BX841638.1|CNS09YLQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB87ZC06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 637

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 513 aagtacaagtgtggttccaatgttttctggaaatggtgaag 553
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>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 6    aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
            |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 2168 aagtacaagtgtggttccaatgttttctggaaatggtgaag 2128
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>gb|U32176.1|ATU32176 Arabidopsis thaliana photosystem I PSI-N mRNA, nuclear gene
           encoding chloroplast protein, complete cds
          Length = 637

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   aagttcaagtgcgggtccaacgtcttctggaaatggtgaag 46
           |||| |||||| || ||||| || |||||||||||||||||
Sbjct: 508 aagtacaagtgtggttccaatgttttctggaaatggtgaag 548
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 35      gaaatggtgaagctggtcga 54
               ||||||||||||||||||||
Sbjct: 1667670 gaaatggtgaagctggtcga 1667689
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>gb|DQ124073.1| Coffea arabica clone MN-SSH2-D11 mRNA sequence
          Length = 643

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                  
Query: 6  aagttcaagtgcgggtccaacgtcttctggaaatggtgaa 45
          ||||||||||| || || || || ||||||||||||||||
Sbjct: 48 aagttcaagtgtggttcaaatgtgttctggaaatggtgaa 9
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     gtaattttatcatcaagtgg 159
               ||||||||||||||||||||
Sbjct: 1181457 gtaattttatcatcaagtgg 1181476
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>emb|AL928840.8| Mouse DNA sequence from clone RP24-233J2 on chromosome 2, complete
            sequence
          Length = 35917

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   ctgatgtatgtcagtcaggc 85
            ||||||||||||||||||||
Sbjct: 1380 ctgatgtatgtcagtcaggc 1361
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>emb|AL732450.5| Mouse DNA sequence from clone RP23-190H10 on chromosome X, complete
              sequence
          Length = 160831

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    tgtaattttatcatcaagtg 158
              ||||||||||||||||||||
Sbjct: 108593 tgtaattttatcatcaagtg 108574
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>emb|AL591712.18| Mouse DNA sequence from clone RP23-138C10 on chromosome 2, complete
              sequence
          Length = 168958

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     ctgatgtatgtcagtcaggc 85
              ||||||||||||||||||||
Sbjct: 168338 ctgatgtatgtcagtcaggc 168319
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>ref|XM_641352.1| Dictyostelium discoideum hypothetical protein (DDB0190712), partial
           mRNA
          Length = 1101

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 141 taattttatcatcaagtgg 159
           |||||||||||||||||||
Sbjct: 566 taattttatcatcaagtgg 584
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>gb|AF067948.3| Caenorhabditis elegans cosmid T27C4, complete sequence
          Length = 27967

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 134   gtctctgtaattttatcat 152
             |||||||||||||||||||
Sbjct: 24722 gtctctgtaattttatcat 24740
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>gb|BT013274.1| Lycopersicon esculentum clone 134851R, mRNA sequence
          Length = 665

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 30  ttctggaaatggtgaagct 48
           |||||||||||||||||||
Sbjct: 550 ttctggaaatggtgaagct 568
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>gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 223468

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 113    tgtttcggctgtgaagtca 131
              |||||||||||||||||||
Sbjct: 112526 tgtttcggctgtgaagtca 112544
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>gb|AC146509.2| Pan troglodytes BAC clone RP43-93E9 from X, complete sequence
          Length = 135272

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    tggaaatggtgaagctggt 51
             |||||||||||||||||||
Sbjct: 53845 tggaaatggtgaagctggt 53827
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>emb|Z75746.1|HSU221F2 Human DNA sequence from clone LL0XNC01-221F2 on chromosome X Contains
            the NXF3 gene for nuclear RNA export factor 3 and a novel
            pseudogene, complete sequence
          Length = 37764

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   tggaaatggtgaagctggt 51
            |||||||||||||||||||
Sbjct: 1928 tggaaatggtgaagctggt 1946
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>emb|AL162376.15| Human DNA sequence from clone RP11-309J13 on chromosome 13, complete
             sequence
          Length = 191606

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 139   tgtaattttatcatcaagt 157
             |||||||||||||||||||
Sbjct: 83670 tgtaattttatcatcaagt 83652
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 43      gaagctggtcgatatggcg 61
               |||||||||||||||||||
Sbjct: 1597462 gaagctggtcgatatggcg 1597480
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>emb|AL592105.14| Zebrafish DNA sequence from clone BUSM1-150L22 in linkage group 7
             Contains the 3' part of the men1 gene (multiple endocrine
             neoplasia type 1 (menin 1)), a gene for a novel protein
             kinase, three genes for novel immune-type receptor, a
             novel immune-type receptor pseudogene, the nitr4.2,
             nitr5.3 and nitr1.23 genes (novel immune-type receptor
             4.2, 5.3 and 1.23), a novel gene and a CpG island,
             complete sequence
          Length = 106023

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 93098 ttctggaaatggtgaagct 93080
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>emb|AL591476.7| Zebrafish DNA sequence from clone BUSM1-263J20 in linkage group 7
             Contains a gene for a novel kinase with a CNH domain, nine
             genes for novel immune-type receptors (nitr) and a nitr
             pseudogene, complete sequence
          Length = 93413

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 59876 ttctggaaatggtgaagct 59858
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>emb|AL591382.3| Zebrafish DNA sequence from clone BUSM1-105L16 in linkage group 7
             Contains the nitr2d_1 gene for novel immune-type receptor
             2d, allele 1, the nitr1o_3 gene for novel immune-type
             receptor 1o, allele 3, the nitr1m_2 gene for novel
             immune-type receptor 1m, allele 2, the nitr1l_2 gene for
             novel immune-type receptor 1l, allele 2, a novel
             immune-type receptor 1 pseudogene, the nitr5_4 gene for
             novel immune-type receptor 5, allele 4, the nitr4a_2 gene
             for novel immune-type receptor 4a, allele 2, the nitr1i_2
             gene for novel immune-type receptor 1i, allele 2, the
             nitr1j_1 gene for novel immune-type receptor 1j, allele 1,
             the nitr1g_1 gene for novel immune-type receptor 1g,
             allele 1, a novel immune-type receptor 4b pseudogene, a
             novel gene, the nitr1k_3 gene for novel immune-type
             receptor 1k, allele 3 and a CpG island, complete sequence
          Length = 98934

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 20241 ttctggaaatggtgaagct 20223
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>emb|AL161591.2|ATCHRIV87 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87
          Length = 196339

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tccaacgtcttctggaaat 39
             |||||||||||||||||||
Sbjct: 93308 tccaacgtcttctggaaat 93326
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>emb|AL035601.1|ATF6G17 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6G17 (ESSA project)
          Length = 101009

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tccaacgtcttctggaaat 39
             |||||||||||||||||||
Sbjct: 50699 tccaacgtcttctggaaat 50717
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>emb|AJ457195.1|UBA457195 Uncultured bacterium partial nirS gene for putative nitrite
           reductase, clone BS1266
          Length = 839

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 36  aaatggtgaagctggtcga 54
           |||||||||||||||||||
Sbjct: 322 aaatggtgaagctggtcga 340
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>gb|AY940192.1| Dictyostelium discoideum RNase P protein subunit (rpp30) mRNA,
           complete cds
          Length = 1101

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 141 taattttatcatcaagtgg 159
           |||||||||||||||||||
Sbjct: 566 taattttatcatcaagtgg 584
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>gb|AC024153.22| Homo sapiens 12 BAC RP13-359K18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178905

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 40650 ttctggaaatggtgaagct 40632
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>gb|AC104076.5| Homo sapiens BAC clone RP11-397C2 from 2, complete sequence
          Length = 174622

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 134   gtctctgtaattttatcat 152
             |||||||||||||||||||
Sbjct: 20410 gtctctgtaattttatcat 20392
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>emb|AL591372.3| Zebrafish DNA sequence from clone BUSM1-178A3 in linkage group 7,
             complete sequence
          Length = 32933

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 15754 ttctggaaatggtgaagct 15772
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>emb|AL591405.3| Zebrafish DNA sequence from clone BUSM1-125J23 in linkage group 7,
             complete sequence
          Length = 79994

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 24689 ttctggaaatggtgaagct 24671
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>emb|AL591427.2| Zebrafish DNA sequence from clone BUSM1-219H16 in linkage group 7,
             complete sequence
          Length = 126202

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    ttctggaaatggtgaagct 48
             |||||||||||||||||||
Sbjct: 96919 ttctggaaatggtgaagct 96937
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>emb|AL772230.20| Mouse DNA sequence from clone RP23-381K3 on chromosome 4, complete
             sequence
          Length = 120564

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 135   tctctgtaattttatcatc 153
             |||||||||||||||||||
Sbjct: 63651 tctctgtaattttatcatc 63633
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 28      tcttctggaaatggtgaagctggtcga 54
               ||||||||||| |||||||||| ||||
Sbjct: 1146641 tcttctggaaaaggtgaagctgctcga 1146667


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,185,996
Number of Sequences: 3902068
Number of extensions: 1185996
Number of successful extensions: 81616
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81442
Number of HSP's gapped (non-prelim): 174
length of query: 169
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 147
effective length of database: 17,147,199,772
effective search space: 2520638366484
effective search space used: 2520638366484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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