ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd 31 2.2
2CRTC3_ARATH (O04153) Calreticulin-3 precursor 31 2.2
3MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich p... 30 3.8
4MS87F_DROME (P08175) Male-specific sperm protein Mst87F 30 5.0
5UBP12_SCHPO (O60079) Probable ubiquitin carboxyl-terminal hydrol... 30 5.0
6FTR_RHOBA (Q7UKZ8) Formylmethanofuran--tetrahydromethanopterin f... 29 6.5

>MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd|
          Length = 72

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 184 PSDPCCVFCICPCSGPCHG 128
           P  PCC  C  PC GPC G
Sbjct: 12  PCGPCCGPCCGPCCGPCCG 30



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 175 PCCVFCICPCSGPCHG 128
           PCC  C  PC GPC G
Sbjct: 19  PCCGPCCGPCCGPCCG 34



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>CRTC3_ARATH (O04153) Calreticulin-3 precursor|
          Length = 424

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/18 (77%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +1

Query: 154 RYKRRN-RDHWDDYHDEL 204
           RYKR N RD+ DDYHDEL
Sbjct: 407 RYKRPNPRDYMDDYHDEL 424



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>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 184 PSDPCCVFCICPCSGPC 134
           P  PCC   +CPC  PC
Sbjct: 43  PKSPCCTPKVCPCPTPC 59



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>MS87F_DROME (P08175) Male-specific sperm protein Mst87F|
          Length = 56

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 184 PSDPCCVFCICPCSGPC 134
           P  PCC  C  PC GPC
Sbjct: 5   PCGPCCGPCCGPCCGPC 21



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>UBP12_SCHPO (O60079) Probable ubiquitin carboxyl-terminal hydrolase 12 (EC|
            3.1.2.15) (Ubiquitin thioesterase 12) (Ubiquitin-specific
            processing protease 12) (Deubiquitinating enzyme 12)
          Length = 979

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 327  DHEDHSYVTAGQTIPPILKSQKLGLGPEI*CCECNVHGQRCASF----CKQLLLIQIKRF 494
            D ED   +T    +    K+++LG      C  C    Q         C ++L+  +KRF
Sbjct: 818  DSEDSRTITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRF 877

Query: 495  SSKKK 509
            SS+++
Sbjct: 878  SSERR 882



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>FTR_RHOBA (Q7UKZ8) Formylmethanofuran--tetrahydromethanopterin|
           formyltransferase (EC 2.3.1.101) (H4MPT
           formyltransferase)
          Length = 334

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 360 ALLSHRNDLRGQFNQFPSHETRNTSIIGSNYNAMFMS-NPSF 238
           A +    +L G    FP   TR+ S +GS Y A+F S N SF
Sbjct: 205 AAIDAMRELPGIITPFPGGTTRSGSKVGSKYAALFASTNDSF 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,008,877
Number of Sequences: 219361
Number of extensions: 907074
Number of successful extensions: 2105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2101
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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