>Y113_RICPR (Q9ZE35) UPF0335 protein RP113|
          Length = 78

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +2

Query: 218 VSAVVGTQKIEDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLH 364
           +SAVV  +++E Y   +       +R+ +EK+DLA E+KD+ + DA  H
Sbjct: 1   MSAVVVKEQLEQYISKI-------ERLEEEKSDLAQEVKDI-FQDAASH 41

>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)|
          Length = 1826

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -2

Query: 432  GATSLRICDS-----SPSTLIAVGLVSS*RSASDQPRSLSSEARS-FFS 304
            GA +L+ICD      SP  +IAV  V+    A D P S  SEA S +FS
Sbjct: 1522 GAPALKICDKPAKVPSPPPVIAVTAVTPAPEAQDGPPSPLSEASSGYFS 1570

>SRGP1_HUMAN (Q7Z6B7) SLIT-ROBO Rho GTPase-activating protein 1 (srGAP1)|
           (Rho-GTPase-activating protein 13)
          Length = 1085

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 327 NSKI*AGQMQIFMMKQGQLL*VLKESCHRFLEK*HQRHQ 443
           N+K+  G ++ F+   GQ++ ++ ESC RF+     +HQ
Sbjct: 500 NTKLFNGDLETFVKDSGQVIPLIVESCIRFINLYGLQHQ 538

>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi|
            complex-associated protein of 170 kDa) (GCP170)
          Length = 1498

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 245  IEDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLHDETRPTAMSVEGELSQILRE 424
            +E Y    T K      ++  +  L SELK+L      +H E R    + E ELS++ RE
Sbjct: 852  VEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKR----TAEAELSRLHRE 907

Query: 425  VA 430
            VA
Sbjct: 908  VA 909

>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)|
          Length = 1915

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +2

Query: 248  EDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLHDETRPTAMSVEGELSQILREV 427
            E   + + +    GKR+RK+ N      +D  W D    +++  +  S EG+     R  
Sbjct: 1316 EQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSE 1375

Query: 428  APKTSEGK 451
            AP+    K
Sbjct: 1376 APRRPSRK 1383

>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen
            218 kDa protein) (Mi2-beta)
          Length = 1912

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +2

Query: 248  EDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLHDETRPTAMSVEGELSQILREV 427
            E   + + +    GKR+RK+ N      +D  W D    +++  +  S EG+     R  
Sbjct: 1323 EQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSE 1382

Query: 428  APKTSEGK 451
            AP+    K
Sbjct: 1383 APRRPSRK 1390

>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 IEDYDDAVTKKAPSGKRVRKEKNDLASELKDL--GWSDADLHDETRPTAMSVEGELSQ 412
           + +Y +A+T       RV  E+    + L DL  G+ D +  +E  PTA  V  ELSQ
Sbjct: 136 VAEYPEAITYLLEQYDRVEAEE----ARLSDLITGFVDPNAEEEMAPTATHVGSELSQ 189

>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 IEDYDDAVTKKAPSGKRVRKEKNDLASELKDL--GWSDADLHDETRPTAMSVEGELSQ 412
           + +Y +A+T       RV  E+    + L DL  G+ D +  +E  PTA  V  ELSQ
Sbjct: 136 VAEYPEAITYLLEQYDRVEAEE----ARLSDLITGFVDPNAEEEMAPTATHVGSELSQ 189

>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 27/123 (21%), Positives = 47/123 (38%)
 Frame = +2

Query: 65   EEKGKYKILKSEGKPEEALRAFKHGKXXXXXXXXXXXXXXKSRRMATKAPIVSAVVGTQK 244
            +EKGK K++K EGK  EA+ A                    +   A  A    A +G   
Sbjct: 777  KEKGKIKVIKKEGKAAEAVAA---------------AVGTGATTAAVMAAAGIAAIGP-- 819

Query: 245  IEDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLHDETRPTAMSVEGELSQILRE 424
                     K+  + + +     DL  + ++L   + D+  + +P    +E E  + L+E
Sbjct: 820  --------AKELEAERSLMSSPEDLTKDFEELKAEEVDVTKDIKPQLELIEDE--EKLKE 869

Query: 425  VAP 433
              P
Sbjct: 870  TEP 872

>SYS_OCEIH (Q8EU77) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 424

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +2

Query: 227 VVGTQKIEDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLHDETRPTAMSVEGEL 406
           +  T+K++   +  TKK    KR +K+      E++++G   A L  + +     +E +L
Sbjct: 42  IAETEKLKAQRNEATKKISELKREKKDAEPAIKEMREVGQEIATLDKQLK----DIEEKL 97

Query: 407 SQILREVAPKTSEGKKAG 460
            QI+  +     E    G
Sbjct: 98  EQIMLSIPNLPHESVPVG 115

>WRK32_ARATH (P59583) Probable WRKY transcription factor 32 (WRKY DNA-binding|
           protein 32)
          Length = 466

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 257 DDAVTKKAPSGKRVRKEKNDLAS---ELKDLGWSDADLHDET 373
           D+A T      ++V  EK+ L+    E K LG    DLHDET
Sbjct: 8   DEAKTYTVEKSEKVEPEKDGLSQFRDEEKSLGADMEDLHDET 49

>AKAP5_RAT (P24587) A-kinase anchor protein 5 (A-kinase anchor protein 150|
           kDa) (AKAP 150) (cAMP-dependent protein kinase
           regulatory subunit II high affinity binding protein)
           (P150)
          Length = 714

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
 Frame = +2

Query: 62  VEEKGKYKILKSEGKPEEA-LRAFKHGKXXXXXXXXXXXXXXKSRRMATKAPIVSAVVGT 238
           +E++     +++ G  +EA +   K G                 + + + AP+  A    
Sbjct: 209 LEKESSALRMRTPGSEKEAKVILVKQGVQVQEASVLENSAADSPQPVTSTAPLSPATTHQ 268

Query: 239 QKIEDYDDAVTKKAPSGKRVRKEKNDLASELKDLGWSDADLHDETRPTAMSVEGELSQIL 418
             +E+  D++ + APSGK   + K   A+E K  G +     +E    + + +  LSQ  
Sbjct: 269 LGLEEPSDSIRESAPSGKDDGRRKT--AAEEKKSGETALGQAEEASSVSQADKSVLSQAE 326

Query: 419 REVAPKTSE 445
                 T E
Sbjct: 327 EATVGHTEE 335

>RNH2_HAEIN (P43808) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 197

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +2

Query: 206 KAPIVSAVVGTQKIEDYDDAVTKKAPSGKRVRKEKNDLASELKD------LGWSDADLHD 367
           + P+V AVV    I D  + +   A S K   K++  LA E+K+      LG ++AD  D
Sbjct: 19  RGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKARAWALGRAEADEID 78

Query: 368 E 370
           E
Sbjct: 79  E 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,667,797
Number of Sequences: 219361
Number of extensions: 947199
Number of successful extensions: 3029
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3027
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)