Clone Name | baak4p13 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469219.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3742 Score = 400 bits (202), Expect = e-108 Identities = 385/446 (86%) Strand = Plus / Plus Query: 5 tatgaactcaacaacactgcatccatttttactccggaagaactgcgtcaacaagcagta 64 |||||||||||||| |||| ||| |||||||| || || ||| |||| || ||||||||| Sbjct: 637 tatgaactcaacaatactggatcaatttttaccccagaggaattgcgccagcaagcagta 696 Query: 65 gaagagaagggaaagtacaaaatactaaagtcagaaggaaaacctgaggaagcactgcgg 124 |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct: 697 gaagagaaaaaaaagtacaaaactctgaagtctgaaggtaaacctgaggaagcacttcgg 756 Query: 125 gcattcaagcatggcaaagagcttgagaggcaagccgcagcacttgaattagaattgagg 184 || ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 757 gctttcaagcatggtaaagagcttgagaggcaagccgccgcactggggttagaattgaga 816 Query: 185 aagagcaggagaatggcgacaaaagctcccattgttagtgccgttgttggtacccagaag 244 |||| |||||||||||| ||||||||||||| ||| ||||| || ||| ||||| |||| Sbjct: 817 aagaacaggagaatggctacaaaagctcccagtgtaagtgctgtggttagtaccaagaat 876 Query: 245 attgaggattacgatgacgctgtaacaaaaaaggctccaagtgggaaaagggttagaaaa 304 | |||| || ||||| |||| | | |||||| || ||||||||||||||| ||| Sbjct: 877 ctggagggttctgatgaggctgaatcgaaaaagtctttgcctgggaaaagggttaggaaa 936 Query: 305 gaaaagaatgatcttgcttctgaactcaaagatctaggctggtcagatgcagatcttcat 364 ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct: 937 gaaaagaatgatcttgcctctgaacttaaagatttaggctggtcagatgcagatcttcat 996 Query: 365 gatgaaacaaggccaactgctatgagtgttgaaggagagctgtcacagattcttagagaa 424 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 997 gatgaaacaagaacaactgctatgagtgtggaaggagagttgtcacagattcttagagag 1056 Query: 425 gtagcaccaaagacatcagagggcaa 450 ||| ||||||| ||||||||||||| Sbjct: 1057 gtaacaccaaaatcatcagagggcaa 1082
>gb|AC146718.2| Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence Length = 49565 Score = 400 bits (202), Expect = e-108 Identities = 385/446 (86%) Strand = Plus / Minus Query: 5 tatgaactcaacaacactgcatccatttttactccggaagaactgcgtcaacaagcagta 64 |||||||||||||| |||| ||| |||||||| || || ||| |||| || ||||||||| Sbjct: 41159 tatgaactcaacaatactggatcaatttttaccccagaggaattgcgccagcaagcagta 41100 Query: 65 gaagagaagggaaagtacaaaatactaaagtcagaaggaaaacctgaggaagcactgcgg 124 |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct: 41099 gaagagaaaaaaaagtacaaaactctgaagtctgaaggtaaacctgaggaagcacttcgg 41040 Query: 125 gcattcaagcatggcaaagagcttgagaggcaagccgcagcacttgaattagaattgagg 184 || ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 41039 gctttcaagcatggtaaagagcttgagaggcaagccgccgcactggggttagaattgaga 40980 Query: 185 aagagcaggagaatggcgacaaaagctcccattgttagtgccgttgttggtacccagaag 244 |||| |||||||||||| ||||||||||||| ||| ||||| || ||| ||||| |||| Sbjct: 40979 aagaacaggagaatggctacaaaagctcccagtgtaagtgctgtggttagtaccaagaat 40920 Query: 245 attgaggattacgatgacgctgtaacaaaaaaggctccaagtgggaaaagggttagaaaa 304 | |||| || ||||| |||| | | |||||| || ||||||||||||||| ||| Sbjct: 40919 ctggagggttctgatgaggctgaatcgaaaaagtctttgcctgggaaaagggttaggaaa 40860 Query: 305 gaaaagaatgatcttgcttctgaactcaaagatctaggctggtcagatgcagatcttcat 364 ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct: 40859 gaaaagaatgatcttgcctctgaacttaaagatttaggctggtcagatgcagatcttcat 40800 Query: 365 gatgaaacaaggccaactgctatgagtgttgaaggagagctgtcacagattcttagagaa 424 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 40799 gatgaaacaagaacaactgctatgagtgtggaaggagagttgtcacagattcttagagag 40740 Query: 425 gtagcaccaaagacatcagagggcaa 450 ||| ||||||| ||||||||||||| Sbjct: 40739 gtaacaccaaaatcatcagagggcaa 40714
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 400 bits (202), Expect = e-108 Identities = 385/446 (86%) Strand = Plus / Plus Query: 5 tatgaactcaacaacactgcatccatttttactccggaagaactgcgtcaacaagcagta 64 |||||||||||||| |||| ||| |||||||| || || ||| |||| || ||||||||| Sbjct: 26144667 tatgaactcaacaatactggatcaatttttaccccagaggaattgcgccagcaagcagta 26144726 Query: 65 gaagagaagggaaagtacaaaatactaaagtcagaaggaaaacctgaggaagcactgcgg 124 |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct: 26144727 gaagagaaaaaaaagtacaaaactctgaagtctgaaggtaaacctgaggaagcacttcgg 26144786 Query: 125 gcattcaagcatggcaaagagcttgagaggcaagccgcagcacttgaattagaattgagg 184 || ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 26144787 gctttcaagcatggtaaagagcttgagaggcaagccgccgcactggggttagaattgaga 26144846 Query: 185 aagagcaggagaatggcgacaaaagctcccattgttagtgccgttgttggtacccagaag 244 |||| |||||||||||| ||||||||||||| ||| ||||| || ||| ||||| |||| Sbjct: 26144847 aagaacaggagaatggctacaaaagctcccagtgtaagtgctgtggttagtaccaagaat 26144906 Query: 245 attgaggattacgatgacgctgtaacaaaaaaggctccaagtgggaaaagggttagaaaa 304 | |||| || ||||| |||| | | |||||| || ||||||||||||||| ||| Sbjct: 26144907 ctggagggttctgatgaggctgaatcgaaaaagtctttgcctgggaaaagggttaggaaa 26144966 Query: 305 gaaaagaatgatcttgcttctgaactcaaagatctaggctggtcagatgcagatcttcat 364 ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct: 26144967 gaaaagaatgatcttgcctctgaacttaaagatttaggctggtcagatgcagatcttcat 26145026 Query: 365 gatgaaacaaggccaactgctatgagtgttgaaggagagctgtcacagattcttagagaa 424 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 26145027 gatgaaacaagaacaactgctatgagtgtggaaggagagttgtcacagattcttagagag 26145086 Query: 425 gtagcaccaaagacatcagagggcaa 450 ||| ||||||| ||||||||||||| Sbjct: 26145087 gtaacaccaaaatcatcagagggcaa 26145112
>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence, complete sequence Length = 139187 Score = 400 bits (202), Expect = e-108 Identities = 385/446 (86%) Strand = Plus / Minus Query: 5 tatgaactcaacaacactgcatccatttttactccggaagaactgcgtcaacaagcagta 64 |||||||||||||| |||| ||| |||||||| || || ||| |||| || ||||||||| Sbjct: 11883 tatgaactcaacaatactggatcaatttttaccccagaggaattgcgccagcaagcagta 11824 Query: 65 gaagagaagggaaagtacaaaatactaaagtcagaaggaaaacctgaggaagcactgcgg 124 |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct: 11823 gaagagaaaaaaaagtacaaaactctgaagtctgaaggtaaacctgaggaagcacttcgg 11764 Query: 125 gcattcaagcatggcaaagagcttgagaggcaagccgcagcacttgaattagaattgagg 184 || ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 11763 gctttcaagcatggtaaagagcttgagaggcaagccgccgcactggggttagaattgaga 11704 Query: 185 aagagcaggagaatggcgacaaaagctcccattgttagtgccgttgttggtacccagaag 244 |||| |||||||||||| ||||||||||||| ||| ||||| || ||| ||||| |||| Sbjct: 11703 aagaacaggagaatggctacaaaagctcccagtgtaagtgctgtggttagtaccaagaat 11644 Query: 245 attgaggattacgatgacgctgtaacaaaaaaggctccaagtgggaaaagggttagaaaa 304 | |||| || ||||| |||| | | |||||| || ||||||||||||||| ||| Sbjct: 11643 ctggagggttctgatgaggctgaatcgaaaaagtctttgcctgggaaaagggttaggaaa 11584 Query: 305 gaaaagaatgatcttgcttctgaactcaaagatctaggctggtcagatgcagatcttcat 364 ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct: 11583 gaaaagaatgatcttgcctctgaacttaaagatttaggctggtcagatgcagatcttcat 11524 Query: 365 gatgaaacaaggccaactgctatgagtgttgaaggagagctgtcacagattcttagagaa 424 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 11523 gatgaaacaagaacaactgctatgagtgtggaaggagagttgtcacagattcttagagag 11464 Query: 425 gtagcaccaaagacatcagagggcaa 450 ||| ||||||| ||||||||||||| Sbjct: 11463 gtaacaccaaaatcatcagagggcaa 11438
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 400 bits (202), Expect = e-108 Identities = 385/446 (86%) Strand = Plus / Plus Query: 5 tatgaactcaacaacactgcatccatttttactccggaagaactgcgtcaacaagcagta 64 |||||||||||||| |||| ||| |||||||| || || ||| |||| || ||||||||| Sbjct: 26235976 tatgaactcaacaatactggatcaatttttaccccagaggaattgcgccagcaagcagta 26236035 Query: 65 gaagagaagggaaagtacaaaatactaaagtcagaaggaaaacctgaggaagcactgcgg 124 |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct: 26236036 gaagagaaaaaaaagtacaaaactctgaagtctgaaggtaaacctgaggaagcacttcgg 26236095 Query: 125 gcattcaagcatggcaaagagcttgagaggcaagccgcagcacttgaattagaattgagg 184 || ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 26236096 gctttcaagcatggtaaagagcttgagaggcaagccgccgcactggggttagaattgaga 26236155 Query: 185 aagagcaggagaatggcgacaaaagctcccattgttagtgccgttgttggtacccagaag 244 |||| |||||||||||| ||||||||||||| ||| ||||| || ||| ||||| |||| Sbjct: 26236156 aagaacaggagaatggctacaaaagctcccagtgtaagtgctgtggttagtaccaagaat 26236215 Query: 245 attgaggattacgatgacgctgtaacaaaaaaggctccaagtgggaaaagggttagaaaa 304 | |||| || ||||| |||| | | |||||| || ||||||||||||||| ||| Sbjct: 26236216 ctggagggttctgatgaggctgaatcgaaaaagtctttgcctgggaaaagggttaggaaa 26236275 Query: 305 gaaaagaatgatcttgcttctgaactcaaagatctaggctggtcagatgcagatcttcat 364 ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct: 26236276 gaaaagaatgatcttgcctctgaacttaaagatttaggctggtcagatgcagatcttcat 26236335 Query: 365 gatgaaacaaggccaactgctatgagtgttgaaggagagctgtcacagattcttagagaa 424 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 26236336 gatgaaacaagaacaactgctatgagtgtggaaggagagttgtcacagattcttagagag 26236395 Query: 425 gtagcaccaaagacatcagagggcaa 450 ||| ||||||| ||||||||||||| Sbjct: 26236396 gtaacaccaaaatcatcagagggcaa 26236421
>dbj|AK121639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054G22, full insert sequence Length = 3064 Score = 400 bits (202), Expect = e-108 Identities = 385/446 (86%) Strand = Plus / Plus Query: 5 tatgaactcaacaacactgcatccatttttactccggaagaactgcgtcaacaagcagta 64 |||||||||||||| |||| ||| |||||||| || || ||| |||| || ||||||||| Sbjct: 814 tatgaactcaacaatactggatcaatttttaccccagaggaattgcgccagcaagcagta 873 Query: 65 gaagagaagggaaagtacaaaatactaaagtcagaaggaaaacctgaggaagcactgcgg 124 |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct: 874 gaagagaaaaaaaagtacaaaactctgaagtctgaaggtaaacctgaggaagcacttcgg 933 Query: 125 gcattcaagcatggcaaagagcttgagaggcaagccgcagcacttgaattagaattgagg 184 || ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 934 gctttcaagcatggtaaagagcttgagaggcaagccgccgcactggggttagaattgaga 993 Query: 185 aagagcaggagaatggcgacaaaagctcccattgttagtgccgttgttggtacccagaag 244 |||| |||||||||||| ||||||||||||| ||| ||||| || ||| ||||| |||| Sbjct: 994 aagaacaggagaatggctacaaaagctcccagtgtaagtgctgtggttagtaccaagaat 1053 Query: 245 attgaggattacgatgacgctgtaacaaaaaaggctccaagtgggaaaagggttagaaaa 304 | |||| || ||||| |||| | | |||||| || ||||||||||||||| ||| Sbjct: 1054 ctggagggttctgatgaggctgaatcgaaaaagtctttgcctgggaaaagggttaggaaa 1113 Query: 305 gaaaagaatgatcttgcttctgaactcaaagatctaggctggtcagatgcagatcttcat 364 ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct: 1114 gaaaagaatgatcttgcctctgaacttaaagatttaggctggtcagatgcagatcttcat 1173 Query: 365 gatgaaacaaggccaactgctatgagtgttgaaggagagctgtcacagattcttagagaa 424 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 1174 gatgaaacaagaacaactgctatgagtgtggaaggagagttgtcacagattcttagagag 1233 Query: 425 gtagcaccaaagacatcagagggcaa 450 ||| ||||||| ||||||||||||| Sbjct: 1234 gtaacaccaaaatcatcagagggcaa 1259
>ref|NM_104851.4| Arabidopsis thaliana zinc ion binding AT1G61690 mRNA, complete cds Length = 3640 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 41 gaagaactgcgtcaacaagcagtagaagagaag 73 |||||| ||||| ||||||||||||||| |||| Sbjct: 457 gaagaattgcgtaaacaagcagtagaagcgaag 489
>gb|BC081665.1| Danio rerio similar to pinin, desmosome associated protein, mRNA (cDNA clone IMAGE:7049098), partial cds Length = 2589 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 agaattgaggaagagcaggag 195 ||||||||||||||||||||| Sbjct: 1296 agaattgaggaagagcaggag 1316
>gb|BC056140.1| Danio rerio similar to pinin, desmosome associated protein, mRNA (cDNA clone IMAGE:3815401), partial cds Length = 2616 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 agaattgaggaagagcaggag 195 ||||||||||||||||||||| Sbjct: 1318 agaattgaggaagagcaggag 1338
>gb|BT010746.1| Arabidopsis thaliana At1g61690 gene, complete cds Length = 3516 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 41 gaagaactgcgtcaacaagcagtagaagagaag 73 |||||| ||||| ||||||||||||||| |||| Sbjct: 457 gaagaattgcgtaaacaagcagtagaagcgaag 489
>gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, complete sequence Length = 191821 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 agatgcagatcttcatgatga 369 ||||||||||||||||||||| Sbjct: 3769 agatgcagatcttcatgatga 3749
>gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete sequence Length = 191541 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 ttgaggaagagcaggagaatggcga 203 |||||||||||| |||||||||||| Sbjct: 183788 ttgaggaagagcgggagaatggcga 183812
>gb|AC012018.24| Homo sapiens 12 BAC RP11-691B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 60163 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 caaaatactaaagtcagaaggaaaa 106 ||||||||||||||||||| ||||| Sbjct: 59150 caaaatactaaagtcagaatgaaaa 59174
>gb|AC089984.23| Homo sapiens 12q BAC RP11-2H8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147638 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 caaaatactaaagtcagaaggaaaa 106 ||||||||||||||||||| ||||| Sbjct: 986 caaaatactaaagtcagaatgaaaa 1010
>dbj|AK221276.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-18-B08 Length = 3821 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 41 gaagaactgcgtcaacaagcagtagaagagaag 73 |||||| ||||| ||||||||||||||| |||| Sbjct: 534 gaagaattgcgtaaacaagcagtagaagcgaag 566
>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence Length = 166669 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 agatgcagatcttcatgatga 369 ||||||||||||||||||||| Sbjct: 150618 agatgcagatcttcatgatga 150598
>gb|BC095809.1| Danio rerio similar to pinin, desmosome associated protein, mRNA (cDNA clone IMAGE:7401418), partial cds Length = 2602 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 agaattgaggaagagcaggag 195 ||||||||||||||||||||| Sbjct: 1318 agaattgaggaagagcaggag 1338
>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete sequence Length = 87394 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 41 gaagaactgcgtcaacaagcagtagaagagaag 73 |||||| ||||| ||||||||||||||| |||| Sbjct: 37779 gaagaattgcgtaaacaagcagtagaagcgaag 37747
>dbj|AP002937.1| Rondeletia loricata mitochondrial DNA, complete genome Length = 16530 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cactgcatccatttttactcc 39 ||||||||||||||||||||| Sbjct: 7704 cactgcatccatttttactcc 7684
>gb|BC063907.1| Xenopus tropicalis mevalonate (diphospho) decarboxylase, mRNA (cDNA clone IMAGE:5307745), partial cds Length = 2602 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 gttgaaggagagctgtcacagatt 415 |||||||||||||||||| ||||| Sbjct: 437 gttgaaggagagctgtcagagatt 460
>gb|BC077011.1| Xenopus tropicalis 60S ribosomal protein L35, mRNA (cDNA clone MGC:89716 IMAGE:7026875), complete cds Length = 456 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cagaaggaaaacctgaggaa 115 |||||||||||||||||||| Sbjct: 222 cagaaggaaaacctgaggaa 241
>gb|AC003677.1| Human P1 356C6 (h49) chromosome 5q, complete sequence Length = 82237 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 408 cacagattcttagagaagtagcac 431 |||||||||||||||||| ||||| Sbjct: 61690 cacagattcttagagaaggagcac 61713
>gb|BC080239.1| Rattus norvegicus aldo-keto reductase family 1, member B8, mRNA (cDNA clone MGC:91427 IMAGE:7100613), complete cds Length = 3020 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaggaaaacctgaggaagca 118 |||||||||||||||||||| Sbjct: 2446 aaggaaaacctgaggaagca 2465
>gb|BC059774.1| Xenopus tropicalis 60S ribosomal protein L35, mRNA (cDNA clone MGC:76336 IMAGE:5380801), complete cds Length = 445 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cagaaggaaaacctgaggaa 115 |||||||||||||||||||| Sbjct: 199 cagaaggaaaacctgaggaa 218
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 606622 agaaaagaaaagaatgatct 606641
>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence Length = 171059 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 288 ggaaaagggttagaaaagaaaagaatgatcttgcttctga 327 |||||||||||| || ||||||| |||||||||||||| Sbjct: 147464 ggaaaagggttaaggaaaaaaagaacgatcttgcttctga 147503
>gb|AC145984.3| Pan troglodytes BAC clone RP43-17F10 from 7, complete sequence Length = 186825 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 gttagaaaagaaaagaatgatctt 319 |||| ||||||||||||||||||| Sbjct: 184227 gttaaaaaagaaaagaatgatctt 184204
>gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosome 18, complete sequence Length = 183551 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gttagaaaagaaaagaatga 315 |||||||||||||||||||| Sbjct: 61373 gttagaaaagaaaagaatga 61392
>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete sequence Length = 213684 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aaagtcagaaggaaaacctg 110 |||||||||||||||||||| Sbjct: 179479 aaagtcagaaggaaaacctg 179460
>gb|AC005094.1| Homo sapiens BAC clone CTA-332B22 from 7, complete sequence Length = 158078 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gttagaaaagaaaagaatgatctt 319 |||| ||||||||||||||||||| Sbjct: 6775 gttaaaaaagaaaagaatgatctt 6798
>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence Length = 240699 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gttagaaaagaaaagaatgatctt 319 |||| ||||||||||||||||||| Sbjct: 91307 gttaaaaaagaaaagaatgatctt 91330
>gb|AY302574.2| Thunnus thynnus thynnus mitochondrion, complete genome Length = 16526 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 7704 actgcatccatttttactcc 7685
>ref|NM_001016925.2| Xenopus tropicalis DnaJ (Hsp40) homolog, subfamily C, member 10 (dnajc10), mRNA Length = 1082 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gaaggaaaacctgaggaagcactg 121 |||||||| ||||||||||||||| Sbjct: 740 gaaggaaaccctgaggaagcactg 763
>emb|AL161507.2|ATCHRIV19 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 19 Length = 183181 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 57316 agaaaagaaaagaatgatct 57335
>emb|AJ278471.1|STH278471 Streptococcus thermophilus site-specific integrative conjugative element ICESt1 and flanking regions Length = 36272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 19923 agaaaagaaaagaatgatct 19942
>gb|AY971770.1| Thunnus thynnus cytochrome c oxidase subunit II (COXII) gene, partial cds; mitochondrial Length = 690 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 524 actgcatccatttttactcc 505
>gb|AY971769.1| Thunnus obesus cytochrome c oxidase subunit II (COXII) gene, partial cds; mitochondrial Length = 690 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 524 actgcatccatttttactcc 505
>gb|AY971768.1| Thunnus albacares cytochrome c oxidase subunit II (COXII) gene, partial cds; mitochondrial Length = 690 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 524 actgcatccatttttactcc 505
>gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, complete sequence Length = 179810 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 31215 agaaaagaaaagaatgatct 31234
>gb|BC099242.1| Xenopus laevis cDNA clone MGC:116425 IMAGE:6872315, complete cds Length = 466 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cagaaggaaaacctgaggaa 115 |||||||||||||||||||| Sbjct: 221 cagaaggaaaacctgaggaa 240
>emb|BX664614.11| Zebrafish DNA sequence from clone DKEY-148H10 in linkage group 6, complete sequence Length = 184225 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 cttcatgatgaaacaaggccaact 382 ||||||||| |||||||||||||| Sbjct: 137462 cttcatgattaaacaaggccaact 137439
>gb|AC008691.7| Homo sapiens chromosome 5 clone CTB-63A22, complete sequence Length = 153267 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 267 taacaaaaaaggctccaagtggga 290 ||||||||||| |||||||||||| Sbjct: 95717 taacaaaaaagactccaagtggga 95694
>gb|AC008749.6| Homo sapiens chromosome 19 clone CTD-2611O12, complete sequence Length = 142439 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 catggcaaagagcttgagag 153 |||||||||||||||||||| Sbjct: 88190 catggcaaagagcttgagag 88171
>dbj|AK098123.1| Mus musculus cDNA fis, clone TRACH2008583,highly similar to CYTOCHROME P450 4A8 (EC 1.14.14.1) Length = 2376 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaagcagtagaagagaagg 74 |||||||||||||||||||| Sbjct: 1876 acaagcagtagaagagaagg 1857
>gb|AC007166.7| Arabidopsis thaliana chromosome 2 clone F14P14 map mi421, complete sequence Length = 92569 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 89068 agaaaagaaaagaatgatct 89087
>gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map mi421, complete sequence Length = 113960 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 1951 agaaaagaaaagaatgatct 1970
>dbj|AK135026.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430547G06 product:unclassifiable, full insert sequence Length = 1944 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aaagtcagaaggaaaacctg 110 |||||||||||||||||||| Sbjct: 1016 aaagtcagaaggaaaacctg 1035
>gb|AE010147.1| Pyrococcus furiosus DSM 3638, section 22 of 173 of the complete genome Length = 11842 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aattagaattgaggaagagc 190 |||||||||||||||||||| Sbjct: 9923 aattagaattgaggaagagc 9904
>gb|AC087174.4| Homo sapiens chromosome 11, clone RP11-640J11, complete sequence Length = 187218 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 282 caagtgggaaaagggttagaaaagaaaa 309 |||||| ||||||||||| ||||||||| Sbjct: 38783 caagtgagaaaagggttaaaaaagaaaa 38756
>gb|BC060945.1| Mus musculus cDNA sequence BC060945, mRNA (cDNA clone MGC:74033 IMAGE:30304458), complete cds Length = 2406 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaagcagtagaagagaagg 74 |||||||||||||||||||| Sbjct: 1876 acaagcagtagaagagaagg 1857
>ref|NM_172306.2| Mus musculus cDNA sequence BC060945 (BC060945), mRNA Length = 2395 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaagcagtagaagagaagg 74 |||||||||||||||||||| Sbjct: 1895 acaagcagtagaagagaagg 1876
>gb|AC034206.4| Homo sapiens chromosome 5 clone CTC-321K16, complete sequence Length = 108123 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 cacagattcttagagaagtagcac 431 |||||||||||||||||| ||||| Sbjct: 61149 cacagattcttagagaaggagcac 61126
>dbj|AK076669.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930408H07 product:unclassifiable, full insert sequence Length = 963 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aaagtcagaaggaaaacctg 110 |||||||||||||||||||| Sbjct: 555 aaagtcagaaggaaaacctg 574
>gb|AC126182.2| Homo sapiens 3 BAC RP11-359H3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196944 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 cagagggcaagaaagctggt 460 |||||||||||||||||||| Sbjct: 142130 cagagggcaagaaagctggt 142149
>ref|NM_203585.1| Xenopus tropicalis 60S ribosomal protein L35 (MGC76336), mRNA Length = 445 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cagaaggaaaacctgaggaa 115 |||||||||||||||||||| Sbjct: 199 cagaaggaaaacctgaggaa 218
>gb|AC156938.3| Mus musculus BAC clone RP23-314M12 from chromosome 14, complete sequence Length = 207534 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aaagtcagaaggaaaacctg 110 |||||||||||||||||||| Sbjct: 87690 aaagtcagaaggaaaacctg 87671
>gb|AC015971.4| Homo sapiens BAC clone RP11-269K22 from 2, complete sequence Length = 163852 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 caaaatactaaagtcagaag 101 |||||||||||||||||||| Sbjct: 92423 caaaatactaaagtcagaag 92404
>gb|AC008046.4|AC008046 Arabidopsis thaliana chromosome I BAC F5A13 genomic sequence, complete sequence Length = 94618 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 60489 agaaaagaaaagaatgatct 60470
>gb|AC069554.4|AC069554 Genomic Sequence For Arabidopsis thaliana Clone F19I11 From Chromosome V, complete sequence Length = 96743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 79142 agaaaagaaaagaatgatct 79123
>gb|AC069552.5|AC069552 Genomic Sequence For Arabidopsis thaliana Clone F17M07 From Chromosome V, complete sequence Length = 105743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 6282 agaaaagaaaagaatgatct 6263
>emb|AL928868.5| Mouse DNA sequence from clone RP23-428O15 on chromosome 2, complete sequence Length = 146169 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gatgaaacaaggccaactgc 384 |||||||||||||||||||| Sbjct: 137571 gatgaaacaaggccaactgc 137590
>dbj|AB097669.1| Thunnus thynnus thynnus mitochondrial DNA, complete genome Length = 16526 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 8569 actgcatccatttttactcc 8550
>dbj|AB046425.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F19I11 Length = 96744 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 17602 agaaaagaaaagaatgatct 17621
>dbj|AB101291.1| Thunnus alalunga mitochondrial DNA, complete genome Length = 16527 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 8570 actgcatccatttttactcc 8551
>gb|AF147259.1|F10A2 Arabidopsis thaliana BAC F10A2 Length = 123080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 114298 agaaaagaaaagaatgatct 114317
>emb|Z71555.1|SCYNL279W S.cerevisiae chromosome XIV reading frame ORF YNL279w Length = 2859 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 attgttagtgccgttgttggtacc 238 |||||||||||||||| ||||||| Sbjct: 869 attgttagtgccgttgatggtacc 892
>gb|AC004600.2|AC004600 Homo sapiens Chromosome 15q11-q13 PAC clone pDJ373b1 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 133863 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 60356 agaaaagaaaagaatgatct 60375
>emb|CR762237.2| Xenopus tropicalis finished cDNA, clone TGas044l18 Length = 457 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cagaaggaaaacctgaggaa 115 |||||||||||||||||||| Sbjct: 198 cagaaggaaaacctgaggaa 217
>emb|CR762332.2| Xenopus tropicalis finished cDNA, clone TGas052p13 Length = 1082 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gaaggaaaacctgaggaagcactg 121 |||||||| ||||||||||||||| Sbjct: 740 gaaggaaaccctgaggaagcactg 763
>emb|Y10222.1|MMCYP4A12 M.musculus cyp4a12 gene, exon 12 Length = 1372 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaagcagtagaagagaagg 74 |||||||||||||||||||| Sbjct: 574 acaagcagtagaagagaagg 555
>gb|DQ331892.1| Synthetic construct Saccharomyces cerevisiae clone FLH201037.01X PRM1 gene, complete sequence Length = 1986 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 attgttagtgccgttgttggtacc 238 |||||||||||||||| ||||||| Sbjct: 364 attgttagtgccgttgatggtacc 387
>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence Length = 184206 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 actgcatccatttttactcc 39 |||||||||||||||||||| Sbjct: 127376 actgcatccatttttactcc 127395
>gb|AC004259.1|AC004259 Human Chromosome 15q11-q13 PAC clone pDJ14i12 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 118684 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agaaaagaaaagaatgatct 318 |||||||||||||||||||| Sbjct: 39499 agaaaagaaaagaatgatct 39518
>gb|L78778.1|HUM49DC68Z Homo sapiens (subclone 2_e10 from P1 H49) DNA sequence Length = 3470 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 cacagattcttagagaagtagcac 431 |||||||||||||||||| ||||| Sbjct: 2485 cacagattcttagagaaggagcac 2462
>emb|AL627182.22| Mouse DNA sequence from clone RP23-32K12 on chromosome 4, complete sequence Length = 241562 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaagcagtagaagagaagg 74 |||||||||||||||||||| Sbjct: 140817 acaagcagtagaagagaagg 140798 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,986,176 Number of Sequences: 3902068 Number of extensions: 5986176 Number of successful extensions: 351007 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 350666 Number of HSP's gapped (non-prelim): 341 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)