>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +2

Query: 200  MYGFIYQIFPGVGQ----LSPSAQTMASGFLAVISVNLVIGFYIYMAMKEA 340
            ++  IYQ+F G+ Q    L+ +A ++A   LAVI   +V+GFY  + +K A
Sbjct: 3009 VFDLIYQLFKGLAQPVDFLALTASSIAGAILAVI---VVLGFYYLIKLKRA 3056

>ALG8_DROME (Q9W3V8) Probable dolichyl pyrophosphate Glc1Man9GlcNAc2|
           alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase)
          Length = 511

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 176 MWMAPVAIMYGFIYQIFPGVGQLSPSAQTMASGFLAVISVNLVIGFYIYM 325
           ++M+ VA+MYG +Y+IFPG             GF+A+     ++ F +++
Sbjct: 405 LYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSFLLHL 454

>CNRA_RALME (P37972) Nickel and cobalt resistance protein cnrA|
          Length = 1075

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +2

Query: 158  AVTSMVMWMAPVAIMYGFIYQIFPGVGQLSPSAQTMASGFLAVISVNLVIGFYIYMAMKE 337
            A+T+ V+  +P+A+  G    +  G+    P + + A GF+AV  V ++ G  +  A+++
Sbjct: 926  ALTATVLTASPLALAGGVFALLLRGI----PFSISAAVGFIAVSGVAVLNGLVLISAIRK 981

Query: 338  APHQEPQPDPAFLANA 385
                   PD A +  A
Sbjct: 982  RLDDGMAPDAAVIEGA 997

>VE1_BPV6 (Q705F4) Replication protein E1|
          Length = 609

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -3

Query: 389 LWRLLERLDQAVALDGEPPSWPCICKSRSPD 297
           LWR L+  D   A DGEPPS P  C +RS D
Sbjct: 577 LWRQLDLSDAEDAEDGEPPS-PFRCCARSAD 606

>GGT1_PIG (P20735) Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2)|
           (Gamma-glutamyltransferase 1) (GGT 1) (CD224 antigen)
           [Contains: Gamma-glutamyltranspeptidase 1 heavy chain;
           Gamma-glutamyltranspeptidase 1 light chain]
          Length = 568

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 27/81 (33%), Positives = 32/81 (39%)
 Frame = -1

Query: 475 LKLRYCLLHLSLPMGIITHLRRSWLVNACFGVC*KGWIRLWLLMGSLLHGHVYVKADHQI 296
           +K RY LL L+             LV    G+C      LWL   S  H HVY +A    
Sbjct: 1   MKKRYLLLALAAVA----------LVLLILGLC------LWLPSNSKPHNHVYPRAAVAA 44

Query: 295 DRDDSKESTRHSLR*GGKLTD 233
           D     E  R +LR GG   D
Sbjct: 45  DALRCSEIGRDTLRDGGSAVD 65

>NORM_CHRVO (Q7NXN3) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 465

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 125 GEAMSAVITKFAVTSMVMWMA---PVAIMYGFIYQIFPGVGQLSPSAQTMASGFL 280
           G AM+ V+    +   +MWM    P  I  G    +F  V QL+ +AQT+ASG L
Sbjct: 336 GGAMALVLL---LREPIMWMYSADPRVIAMGTTLLLFAAVYQLTDAAQTIASGAL 387

>UGGG2_HUMAN (Q9NYU1) UDP-glucose:glycoprotein glucosyltransferase 2 precursor (EC|
            2.4.1.-) (UDP-glucose ceramide glucosyltransferase-like
            1) (UDP--Glc:glycoprotein glucosyltransferase 2) (HUGT2)
          Length = 1516

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 244  FPLSANYGEWIPCCHLGQSGDRLLHIHGHEG 336
            F L AN G WI   H G+S D +  I GHEG
Sbjct: 1132 FQLKANPGAWILRLHQGKSED-IYQIVGHEG 1161

>WDR39_HUMAN (O76071) WD-repeat protein 39 (Ciao 1 protein)|
          Length = 339

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 389 LWR-LLERLDQAVALDGEPPSWPCIC 315
           +WR  L   +Q VA  G  PSW CIC
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCIC 245

>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3|
          Length = 3497

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = -1

Query: 313  KADHQID------RDDSKESTRHSLR*GGKLTDTWKNLVDK 209
            +A+H  D       + S+E TR   R  GKL++ W NL+D+
Sbjct: 2662 EANHDSDSRYMSAEEQSRELTRSIRREVGKLSEQWNNLIDR 2702

>DMDB_DROME (Q9VDW3) Dystrophin, isoform B|
          Length = 1669

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = -1

Query: 313 KADHQID------RDDSKESTRHSLR*GGKLTDTWKNLVDK 209
           +A+H  D       + S+E TR   R  GKL++ W NL+D+
Sbjct: 834 EANHDSDSRYMSAEEQSRELTRSIRREVGKLSEQWNNLIDR 874

>SRYD_DROME (P07664) Serendipity locus protein delta|
          Length = 433

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 493 HGHKTQLKLRYCLLHLSLPMGIITHLRRSW 404
           H  KT+ + RYC    S P+  + H+R  W
Sbjct: 245 HEGKTEKQCRYCPKSFSRPVNTLRHMRMHW 274

>IRK11_RABIT (O02822) ATP-sensitive inward rectifier potassium channel 11|
           (Potassium channel, inwardly rectifying subfamily J
           member 11) (Inward rectifier K(+) channel Kir6.2)
          Length = 390

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 167 SMVMWMAPVAIMYGFIYQIFPGVGQLSP---SAQTMASGFLAVISVNLVIGFYIYMAMKE 337
           +MV W+  +A  +G    + PG G   P   S  + +S FL  I V + IGF   M  +E
Sbjct: 87  AMVWWL--IAFAHG---DLAPGEGAAVPCVTSIHSFSSAFLFSIEVQVTIGFGGRMVTEE 141

Query: 338 AP 343
            P
Sbjct: 142 CP 143

>IRK11_CAVPO (Q9JHJ9) ATP-sensitive inward rectifier potassium channel 11|
           (Potassium channel, inwardly rectifying subfamily J
           member 11) (Inward rectifier K(+) channel Kir6.2)
           (IKATP)
          Length = 390

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 167 SMVMWMAPVAIMYGFIYQIFPGVGQLSP---SAQTMASGFLAVISVNLVIGFYIYMAMKE 337
           +MV W+  +A  +G    + PG G   P   S  + +S FL  I V + IGF   M  +E
Sbjct: 87  AMVWWL--IAFAHG---DLAPGEGTTVPCVTSIHSFSSAFLFSIEVQVTIGFGGRMVTEE 141

Query: 338 AP 343
            P
Sbjct: 142 CP 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,731,242
Number of Sequences: 219361
Number of extensions: 1731777
Number of successful extensions: 5221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5219
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)