>gb|AY106864.1| Zea mays PCO077289 mRNA sequence
          Length = 833

 Score =  250 bits (126), Expect = 4e-63
 Identities = 288/342 (84%)
 Strand = Plus / Plus

                                                                       
Query: 124 aggagaagcaatgtctgcagtaatcacaaagtttgccgtcacatctatggtgatgtggat 183
           ||||||||||||||| | ||| ||||||||||| || || ||||| ||||||||||||||
Sbjct: 272 aggagaagcaatgtcaggagtgatcacaaagttcgcggttacatccatggtgatgtggat 331

                                                                       
Query: 184 ggcccctgttgcaatcatgtatgggtttatctaccagatttttccaggtgtcggtcagct 243
           |||||||||||| |||||||||||||||  ||||||| | |||||||||||  ||||| |
Sbjct: 332 ggcccctgttgcgatcatgtatgggttttactaccaggtgtttccaggtgtgagtcagat 391

                                                                       
Query: 244 ttccccctcagcgcaaactatggcgagtggattccttgctgtcatctcggtcaatctggt 303
            ||  |||| ||||| ||  | || ||||| ||||| |||||||| || || ||||| ||
Sbjct: 392 gtcatcctcggcgcagacacttgccagtgggttcctggctgtcatatcagttaatctagt 451

                                                                       
Query: 304 gatcggcttttacatatacatggccatgaaggaggctccccatcaagagccacagcctga 363
           ||||||||||||||||| |||||| ||||||||| |||| || |||||||||||||| ||
Sbjct: 452 gatcggcttttacatattcatggcgatgaaggagactccacaccaagagccacagccaga 511

                                                                       
Query: 364 tccagcctttctagcaaacgccaaagcaagcattaaccagccaacttcttctcaagtgag 423
           |||  |||| || |  || |||||||| || || ||||||||||| || |||| ||||||
Sbjct: 512 tcccaccttcctggagaaagccaaagcgagtatcaaccagccaacatcctctcgagtgag 571

                                                     
Query: 424 tgatgattcccatgggaagggaaaggtggagtaggcagtagc 465
           |||||||||| | |||||||||||||| ||||| || |||||
Sbjct: 572 tgatgattccaaggggaagggaaaggtcgagtaagctgtagc 613

>dbj|AK122039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113D07, full
           insert sequence
          Length = 735

 Score =  196 bits (99), Expect = 5e-47
 Identities = 240/287 (83%)
 Strand = Plus / Plus

                                                                       
Query: 172 ggtgatgtggatggcccctgttgcaatcatgtatgggtttatctaccagatttttccagg 231
           |||||||||||  || || ||||| ||| ||||||| |||  |||||||||  |||||||
Sbjct: 313 ggtgatgtggacagctccagttgccatcgtgtatggattttactaccagatgattccagg 372

                                                                       
Query: 232 tgtcggtcagctttccccctcagcgcaaactatggcgagtggattccttgctgtcatctc 291
           |||  |||| || ||  ||||  |||||||| | || ||||||||||||||||| || ||
Sbjct: 373 tgtgagtcaactgtcatcctcgacgcaaactctagcaagtggattccttgctgttatatc 432

                                                                       
Query: 292 ggtcaatctggtgatcggcttttacatatacatggccatgaaggaggctccccatcaaga 351
           | | |||||||| ||||||||||| |||| |||||| ||||||||| ||||||| |||||
Sbjct: 433 gattaatctggtaatcggcttttatatatgcatggcgatgaaggagactccccaccaaga 492

                                                                       
Query: 352 gccacagcctgatccagcctttctagcaaacgccaaagcaagcattaaccagccaacttc 411
           |||||| ||||||||| ||||  | ||||| || |||||||||||  | || |||||| |
Sbjct: 493 gccacaacctgatccaaccttcttggcaaatgctaaagcaagcatcgatcaaccaactcc 552

                                                          
Query: 412 ttctcaagtgagtgatgattcccatgggaagggaaaggtggagtagg 458
            |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 553 gtctcaagtgaatgatgattcccatggaaagggaaaggtggagtagg 599

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  190 bits (96), Expect = 3e-45
 Identities = 177/204 (86%)
 Strand = Plus / Plus

                                                                         
Query: 255   cgcaaactatggcgagtggattccttgctgtcatctcggtcaatctggtgatcggctttt 314
             |||||||| | || ||||||||||||||||| || ||| | |||||||| ||||||||||
Sbjct: 93435 cgcaaactctagcaagtggattccttgctgttatatcgattaatctggtaatcggctttt 93494

                                                                         
Query: 315   acatatacatggccatgaaggaggctccccatcaagagccacagcctgatccagcctttc 374
             | |||| |||||| ||||||||| ||||||| ||||||||||| ||||||||| ||||  
Sbjct: 93495 atatatgcatggcgatgaaggagactccccaccaagagccacaacctgatccaaccttct 93554

                                                                         
Query: 375   tagcaaacgccaaagcaagcattaaccagccaacttcttctcaagtgagtgatgattccc 434
             | ||||| || |||||||||||| | || |||||| | |||||||||| |||||||||||
Sbjct: 93555 tggcaaatgctaaagcaagcattgatcaaccaactccgtctcaagtgaatgatgattccc 93614

                                     
Query: 435   atgggaagggaaaggtggagtagg 458
             |||| |||||||||||||||||||
Sbjct: 93615 atggaaagggaaaggtggagtagg 93638

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  190 bits (96), Expect = 3e-45
 Identities = 177/204 (86%)
 Strand = Plus / Plus

                                                                            
Query: 255      cgcaaactatggcgagtggattccttgctgtcatctcggtcaatctggtgatcggctttt 314
                |||||||| | || ||||||||||||||||| || ||| | |||||||| ||||||||||
Sbjct: 31111354 cgcaaactctagcaagtggattccttgctgttatatcgattaatctggtaatcggctttt 31111413

                                                                            
Query: 315      acatatacatggccatgaaggaggctccccatcaagagccacagcctgatccagcctttc 374
                | |||| |||||| ||||||||| ||||||| ||||||||||| ||||||||| ||||  
Sbjct: 31111414 atatatgcatggcgatgaaggagactccccaccaagagccacaacctgatccaaccttct 31111473

                                                                            
Query: 375      tagcaaacgccaaagcaagcattaaccagccaacttcttctcaagtgagtgatgattccc 434
                | ||||| || |||||||||||| | || |||||| | |||||||||| |||||||||||
Sbjct: 31111474 tggcaaatgctaaagcaagcattgatcaaccaactccgtctcaagtgaatgatgattccc 31111533

                                        
Query: 435      atgggaagggaaaggtggagtagg 458
                |||| |||||||||||||||||||
Sbjct: 31111534 atggaaagggaaaggtggagtagg 31111557

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 52     ccgctgacccgcctgcagatcg 73
              ||||||||||||||||||||||
Sbjct: 158104 ccgctgacccgcctgcagatcg 158083

>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence
          Length = 199100

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 426   atgattcccatgggaagggaa 446
             |||||||||||||||||||||
Sbjct: 96076 atgattcccatgggaagggaa 96096

>gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complete sequence
          Length = 200491

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 355    acagcctgatccagcctttct 375
              |||||||||||||||||||||
Sbjct: 136818 acagcctgatccagcctttct 136798

>gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, complete sequence
          Length = 225883

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   atgattcccatgggaagggaa 446
             |||||||||||||||||||||
Sbjct: 22647 atgattcccatgggaagggaa 22627

>gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, complete sequence
          Length = 192344

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     ccttcgtcttcctctgcctcc 33
              |||||||||||||||||||||
Sbjct: 148475 ccttcgtcttcctctgcctcc 148495

>gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, complete sequence
          Length = 193998

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 6      cctccccccttcgtcttcctctgcctcc 33
              |||||||||||| ||||||||| |||||
Sbjct: 186180 cctccccccttcttcttcctcttcctcc 186153

>gb|AC167198.8| Mus musculus chromosome 3, clone RP23-409M14, complete sequence
          Length = 162427

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 471  ttgagttgagttttatgtcc 490
            ||||||||||||||||||||
Sbjct: 3821 ttgagttgagttttatgtcc 3802

>gb|AC125255.15| Mus musculus chromosome 5, clone RP24-332C17, complete sequence
          Length = 173258

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     cttcgtcttcctctgcctcc 33
              ||||||||||||||||||||
Sbjct: 140088 cttcgtcttcctctgcctcc 140069

>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence
          Length = 205029

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    ttgagttgagttttatgtcc 490
              ||||||||||||||||||||
Sbjct: 131748 ttgagttgagttttatgtcc 131729

>gb|AC161206.10| Mus musculus chromosome 15, clone RP24-299A13, complete sequence
          Length = 165791

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      cctccccccttcgtcttcctctgcctcc 33
              |||||||||||| ||||||||| |||||
Sbjct: 162652 cctccccccttcttcttcctcttcctcc 162679

>ref|XM_542207.2| PREDICTED: Canis familiaris similar to KIAA0963 (LOC485089), mRNA
          Length = 4110

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  ccttcgtcttcctctgcctc 32
           ||||||||||||||||||||
Sbjct: 593 ccttcgtcttcctctgcctc 574

>ref|XM_383620.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03444.1)
            partial mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  ccagccaacttcttctcaag 419
            ||||||||||||||||||||
Sbjct: 1232 ccagccaacttcttctcaag 1213

>gb|AC163198.7| Mus musculus 6 BAC RP23-174M4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188300

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   aggagaagcaatgtctgcag 143
             ||||||||||||||||||||
Sbjct: 61784 aggagaagcaatgtctgcag 61803

>gb|AC158991.2| Mus musculus BAC clone RP24-488G14 from chromosome 7, complete sequence
          Length = 210271

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     cccccttcgtcttcctctgcctcc 33
              |||||||||||||||||| |||||
Sbjct: 156701 cccccttcgtcttcctcttcctcc 156678

>gb|AC084706.11| Homo sapiens chromosome , clone RP11-91P17, complete sequence
          Length = 146810

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   ccagccaacttcttctcaag 419
             ||||||||||||||||||||
Sbjct: 57810 ccagccaacttcttctcaag 57791

>gb|AC022828.10| Homo sapiens chromosome 8, clone RP11-119K24, complete sequence
          Length = 137289

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   ccagccaacttcttctcaag 419
             ||||||||||||||||||||
Sbjct: 28203 ccagccaacttcttctcaag 28222

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 18      gtcttcctctgcctccataaccag 41
               ||||||||||||||||||| ||||
Sbjct: 2733864 gtcttcctctgcctccatatccag 2733887

>gb|AF002279.1|MMAF002279 Mus musculus B29 gene, 5' upstream region and partial cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 6   cctccccccttcgtcttcctctgcctcc 33
           |||||||||||| ||||||||| |||||
Sbjct: 238 cctccccccttcctcttcctcttcctcc 265

>gb|AC126692.4| Mus musculus BAC clone RP23-246J18 from 6, complete sequence
          Length = 195236

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    aggagaagcaatgtctgcag 143
              ||||||||||||||||||||
Sbjct: 168328 aggagaagcaatgtctgcag 168347

>emb|AL604045.7| Mouse DNA sequence from clone RP23-418O11 on chromosome 11, complete
             sequence
          Length = 221399

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 6     cctccccccttcgtcttcctctgcctcc 33
             |||||||||||| ||||||||| |||||
Sbjct: 97545 cctccccccttcctcttcctcttcctcc 97518


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,621,453
Number of Sequences: 3902068
Number of extensions: 4621453
Number of successful extensions: 105257
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105109
Number of HSP's gapped (non-prelim): 145
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)